genome.fa.s26.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  177  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52341041--52341090	26	2.0	25	84	4	64	46	4	0	50	1.20
52343599--52343631	3	11.0	3	100	0	66	66	0	0	33	0.92
52353634--52353682	21	2.3	22	82	13	66	38	2	0	59	1.09
52353735--52353925	90	2.2	88	80	2	213	37	18	9	34	1.84
52353957--52354005	19	2.7	19	76	17	59	61	0	2	36	1.08
52353993--52354061	18	3.8	18	71	19	54	71	1	1	26	1.03
52354013--52354061	10	5.2	10	78	9	50	71	2	2	24	1.07
52354314--52354395	10	8.3	10	72	11	62	24	4	1	69	1.15
52354338--52354383	18	2.6	18	77	19	51	28	0	2	69	1.00
52359246--52359319	33	2.3	33	88	2	105	44	16	5	33	1.70
52362762--52362802	20	2.0	20	85	9	55	56	4	0	39	1.21
52378302--52378362	28	2.1	29	81	3	70	65	3	4	26	1.28
52396327--52396358	13	2.5	13	94	0	55	31	0	12	56	1.37
52396449--52396690	98	2.4	99	83	9	307	26	22	29	21	1.99
52396449--52396683	48	4.7	50	80	9	241	26	22	29	20	1.99
52396449--52396683	51	4.7	49	79	10	221	26	22	29	20	1.99
52403611--52403668	30	1.9	30	89	0	89	41	3	24	31	1.71
52403880--52403911	13	2.5	13	94	0	55	31	0	12	56	1.37
52404006--52404247	50	4.7	50	86	4	297	26	24	29	19	1.99
52404006--52404255	100	2.4	103	88	6	364	26	24	29	20	1.99
52405570--52405769	109	1.9	107	82	4	258	35	19	15	30	1.92
52406033--52406079	4	11.8	4	100	0	94	25	0	23	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52406329--52406385	24	2.3	24	78	6	60	63	0	5	31	1.17
52408219--52409311	44	24.8	44	72	10	574	27	22	19	29	1.98
52408199--52409309	90	12.7	86	69	13	394	27	22	20	29	1.98
52408222--52409004	218	3.6	218	83	5	796	26	23	20	29	1.99
52408271--52409180	134	6.9	134	80	7	841	27	23	20	29	1.99
52410580--52410641	7	8.9	7	100	0	124	14	12	0	72	1.12
52411128--52411184	22	2.4	23	77	8	62	42	0	8	49	1.34
52417455--52417485	16	1.9	16	93	0	53	19	22	6	51	1.69
52424824--52424864	15	2.7	15	84	0	55	48	4	19	26	1.69
52430923--52431056	63	2.1	63	86	2	180	44	6	21	26	1.77
52439447--52439505	22	2.6	23	81	10	59	38	0	0	61	0.96
52439723--52439775	19	3.1	19	67	30	55	33	18	3	43	1.68
52439726--52439786	32	2.0	29	90	9	95	32	14	3	49	1.60
52446781--52446810	3	10.0	3	92	0	51	63	0	3	33	1.11
52453193--52453222	16	1.9	16	93	6	53	36	0	0	63	0.95
52456134--52456198	32	2.0	32	100	0	130	21	21	21	35	1.96
52459618--52459657	21	1.9	21	89	0	62	80	7	2	10	1.00
52459612--52459764	45	3.4	43	74	12	112	72	3	13	9	1.24
52459632--52459712	42	2.0	41	85	7	112	76	3	12	7	1.12
52459612--52459720	45	2.4	47	80	10	120	75	3	12	8	1.16
52461891--52462360	44	10.8	43	67	12	147	28	20	23	27	1.99
52462113--52462387	46	6.2	46	71	11	171	27	19	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52462024--52462360	175	1.9	174	82	7	423	28	20	23	27	1.99
52461886--52462406	219	2.4	215	77	11	524	28	19	23	27	1.99
52462351--52462532	44	4.3	43	75	4	163	31	21	23	23	1.98
52462376--52462532	40	3.7	41	76	9	156	31	23	20	24	1.98
52462376--52462642	127	2.1	127	80	8	285	31	24	19	24	1.98
52466459--52466497	19	2.1	19	100	0	78	38	0	46	15	1.46
52467884--52468068	46	4.0	46	93	0	307	28	28	9	34	1.88
52469292--52469340	17	2.9	17	90	6	73	53	20	0	26	1.46
52471598--52471636	14	2.6	16	80	19	57	35	0	0	64	0.94
52473454--52473516	23	2.6	25	78	14	62	44	3	1	50	1.27
52474317--52474346	14	2.1	15	93	6	53	56	0	0	43	0.99
52475385--52475440	29	1.9	29	82	7	69	58	10	3	26	1.48
52480775--52480838	30	2.1	30	85	8	85	51	0	7	40	1.31
52490686--52490727	22	1.9	22	90	9	68	45	0	7	47	1.30
52493940--52493970	16	1.9	16	93	0	53	54	0	3	41	1.16
52494274--52494370	43	2.3	43	83	3	115	23	29	19	26	1.98
52494253--52494396	43	3.3	43	77	0	108	31	28	16	23	1.96
52494656--52494721	34	1.9	35	84	9	91	54	3	1	40	1.25
52498815--52498864	24	2.0	25	84	3	66	58	2	4	36	1.29
52498849--52498905	10	5.3	11	77	16	57	52	7	0	40	1.28
52498840--52498914	30	2.5	27	78	19	78	49	6	1	42	1.37
52500410--52500608	41	4.7	42	80	7	192	28	30	21	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52500600--52500711	40	2.8	40	82	4	138	19	22	21	36	1.95
52501663--52502598	465	2.0	465	99	0	1854	28	22	20	28	1.98
52510174--52510252	6	13.2	6	89	0	50	13	69	0	16	1.19
52510182--52510254	9	8.1	9	87	0	56	12	68	0	19	1.20
52510227--52510254	3	9.3	3	100	0	56	0	67	0	32	0.91
52514140--52514165	13	2.0	13	100	0	52	61	15	7	15	1.55
52518339--52518375	9	4.1	9	89	0	56	45	10	10	32	1.74
52528220--52528257	19	2.0	19	89	0	58	36	0	15	47	1.46
52528470--52528727	41	6.3	41	90	0	408	29	20	28	22	1.98
52528470--52528721	82	3.1	82	99	0	495	28	19	28	22	1.98
52536172--52536429	41	6.3	41	90	0	408	29	20	28	22	1.98
52536172--52536423	82	3.1	82	99	0	495	28	19	28	22	1.98
52641340--52641389	20	2.5	21	83	9	68	48	2	0	50	1.12
52648325--52648366	21	2.0	22	85	4	59	4	4	28	61	1.36
52651674--52651721	24	2.0	24	95	0	87	47	4	2	45	1.33
52661785--52661823	20	2.0	20	85	10	53	41	12	17	28	1.87
52662660--52662689	6	5.0	6	100	0	60	16	66	0	16	1.25
52662878--52662964	37	2.4	37	96	0	165	20	5	14	58	1.57
52662887--52662952	20	3.5	20	66	19	59	15	6	15	63	1.49
52663305--52663338	16	2.1	16	88	0	50	47	5	2	44	1.42
52663970--52664018	24	2.0	24	84	7	64	30	0	8	61	1.25
52664302--52664350	26	2.0	24	84	8	62	32	10	0	57	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52666275--52666311	16	2.2	18	90	9	60	51	0	0	48	1.00
52666275--52666309	17	2.0	18	88	5	54	51	0	0	48	1.00
52673691--52673954	41	6.4	41	89	1	368	23	27	19	29	1.98
52677133--52677158	6	4.3	6	100	0	52	65	0	0	34	0.93
52683410--52683453	20	2.3	19	84	7	63	63	0	0	36	0.95
52692086--52692114	15	1.9	15	100	0	58	34	0	0	65	0.93
52692047--52692134	26	3.4	27	71	12	76	45	2	1	51	1.21
52692489--52692665	82	2.2	82	81	4	214	19	16	25	38	1.92
52692536--52692955	124	3.4	124	77	6	354	18	16	26	38	1.92
52692741--52692996	125	2.1	124	82	7	322	16	16	28	38	1.90
52694634--52694669	16	2.2	17	90	5	56	61	2	5	30	1.33
52694980--52695036	23	2.4	24	91	2	89	33	45	0	21	1.52
52694980--52695036	12	4.8	12	78	2	62	33	45	0	21	1.52
52694984--52695036	24	2.3	23	90	3	79	30	49	0	20	1.50
52695512--52695551	12	3.4	12	83	16	57	22	7	7	62	1.47
52697015--52697226	69	3.1	69	93	2	345	41	6	4	48	1.49
52699878--52700015	44	3.2	44	79	5	147	24	20	26	28	1.99
52699829--52700036	44	4.8	44	72	11	133	25	17	28	28	1.98
52700030--52700122	43	2.2	43	92	0	150	33	24	20	21	1.97
52701417--52701463	14	3.3	14	75	16	51	27	2	4	65	1.22
52703006--52703054	19	2.5	20	75	18	50	57	2	4	36	1.30
52704323--52704387	32	2.1	32	97	2	123	47	12	9	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52707140--52707280	10	13.4	10	66	22	58	2	14	12	70	1.26
52707129--52707242	45	2.6	44	87	8	162	3	16	12	67	1.35
52707131--52707234	23	4.6	22	77	12	95	2	17	12	67	1.34
52707129--52707248	46	2.6	44	81	12	136	3	15	12	68	1.33
52707499--52707532	4	8.8	4	93	6	61	73	0	0	26	0.83
52707833--52707897	32	2.1	32	97	2	123	47	12	9	30	1.72
52710066--52710137	22	3.3	22	80	11	85	52	0	2	44	1.15
52711786--52711836	17	3.2	16	78	8	50	47	1	0	50	1.12
52711874--52711925	20	2.6	20	96	0	95	46	0	0	53	1.00
52716529--52717108	50	11.7	49	66	8	244	29	21	23	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204