genome.fa.s26.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  149  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45356192--45356240	17	2.8	18	84	6	64	75	6	4	14	1.14
45360073--45360277	99	2.1	99	99	0	401	19	4	33	43	1.70
45360624--45361317	100	6.9	100	86	1	899	24	19	21	34	1.97
45360624--45361317	50	13.9	50	70	3	401	24	19	21	34	1.97
45361306--45361554	131	1.9	131	81	6	299	26	22	20	29	1.99
45361536--45361735	88	2.3	88	85	6	255	23	24	22	29	1.99
45361764--45361882	44	2.7	45	81	5	134	28	26	16	28	1.97
45363952--45364036	26	3.5	25	68	26	74	37	0	5	56	1.24
45363958--45364051	48	2.0	48	91	0	152	38	1	7	53	1.36
45364261--45364305	17	2.5	18	85	7	56	71	0	0	28	0.87
45381922--45381979	21	3.0	20	83	11	68	67	3	5	24	1.27
45385193--45385230	12	2.9	13	80	11	51	0	7	10	81	0.87
45386320--45386376	25	2.3	23	77	16	60	31	3	5	59	1.36
45386322--45386386	27	2.5	25	78	9	67	32	3	4	60	1.33
45391294--45391345	12	3.4	17	73	26	62	23	7	7	61	1.49
45393944--45394103	37	4.7	33	72	14	121	43	4	2	50	1.35
45394682--45394739	30	1.9	30	92	0	98	25	32	29	12	1.92
45395770--45395811	5	8.8	5	84	10	61	42	19	0	38	1.51
45397241--45397586	42	8.1	42	82	5	338	29	28	15	26	1.96
45397235--45397586	128	2.8	126	82	6	388	30	27	15	26	1.96
45397243--45397578	170	2.0	171	84	4	437	30	27	14	27	1.95
45397682--45397754	35	2.1	35	78	14	80	54	2	2	39	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45397685--45397754	34	2.1	34	81	10	81	54	2	2	40	1.30
45399472--45399715	122	2.0	122	91	1	391	30	15	20	33	1.94
45400398--45400972	253	2.3	254	91	2	931	28	18	15	37	1.92
45400730--45401125	213	1.9	214	92	0	668	26	15	15	41	1.88
45401205--45401237	12	2.6	13	90	4	50	42	0	0	57	0.98
45401770--45402072	161	1.9	158	93	3	527	49	25	1	23	1.58
45402206--45402429	41	5.5	41	84	2	290	30	29	19	20	1.97
45402203--45402425	123	1.8	123	90	0	356	30	28	19	21	1.97
45404964--45405001	8	5.0	8	93	6	62	13	0	39	47	1.42
45404964--45405002	7	5.3	7	96	3	60	15	0	38	46	1.46
45412350--45412397	10	4.9	10	76	2	53	25	8	0	66	1.19
45421535--45421578	15	2.9	15	80	6	52	11	11	2	75	1.15
45421550--45421592	21	2.0	21	86	8	61	13	11	0	74	1.07
45422346--45422370	11	2.3	11	100	0	50	92	0	8	0	0.40
45422904--45422936	16	2.1	16	94	0	57	60	3	0	36	1.12
45430092--45430312	41	5.4	41	83	3	275	20	24	25	28	1.99
45430742--45430856	40	2.9	39	87	5	160	36	2	0	60	1.10
45430742--45430846	39	2.7	38	89	4	149	38	2	0	59	1.13
45430832--45430884	23	2.3	22	83	6	61	39	0	3	56	1.17
45431597--45431648	21	2.4	21	81	9	61	30	0	32	36	1.58
45431607--45431645	15	2.7	14	88	4	51	30	0	28	41	1.57
45432402--45432462	10	5.8	10	75	7	50	50	0	4	44	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45432718--45432767	19	2.6	19	79	17	50	42	8	0	50	1.32
45435260--45435286	12	2.2	12	100	0	54	14	0	22	62	1.31
45437409--45437679	43	6.3	43	80	6	280	22	15	29	32	1.95
45437409--45437679	86	3.2	85	80	6	321	22	15	29	32	1.95
45437409--45437701	130	2.3	130	82	6	380	24	15	28	31	1.95
45437862--45437903	9	4.5	10	77	17	54	7	9	11	71	1.31
45442231--45442272	9	4.5	10	77	17	54	7	9	11	71	1.31
45450178--45450221	19	2.4	19	92	3	72	11	18	11	59	1.61
45450561--45450604	20	2.2	20	88	4	63	4	22	9	63	1.42
45450690--45450720	16	1.9	16	100	0	62	22	6	12	58	1.58
45450749--45450774	10	2.6	10	100	0	52	30	0	19	50	1.48
45453993--45454260	129	2.1	129	95	0	482	41	7	10	41	1.67
45454343--45454377	18	1.9	19	88	11	56	31	0	0	68	0.90
45454358--45454382	13	1.9	13	100	0	50	36	0	0	64	0.94
45454363--45454405	21	2.1	21	86	4	61	41	0	0	58	0.98
45455815--45456639	298	2.8	299	79	7	782	40	9	12	37	1.75
45461211--45461268	18	3.3	18	79	13	59	41	8	13	36	1.76
45463898--45463941	17	2.5	17	82	10	54	50	2	15	31	1.57
45468025--45468052	3	9.3	3	100	0	56	0	32	0	67	0.91
45469137--45469178	19	2.2	19	95	0	75	21	19	47	11	1.81
45469588--45469621	16	2.2	15	89	5	50	55	0	0	44	0.99
45480598--45480637	21	1.9	21	100	0	80	47	10	17	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45486185--45486237	27	2.0	27	85	7	72	39	1	3	54	1.29
45486670--45486709	16	2.5	16	95	0	71	37	7	27	27	1.84
45488333--45488408	38	2.0	38	94	0	134	44	19	17	18	1.87
45489365--45489460	40	2.4	40	84	3	113	38	19	21	19	1.93
45489489--45489630	41	3.5	41	93	1	223	14	21	29	34	1.93
45489970--45490007	14	2.7	14	91	0	67	26	0	28	44	1.54
45490094--45490158	14	4.6	14	84	3	78	27	0	36	35	1.57
45490094--45490158	28	2.3	28	86	5	87	27	0	36	35	1.57
45490175--45490318	74	1.9	77	84	4	195	29	1	22	46	1.60
45490321--45490373	21	2.5	21	84	0	70	16	0	45	37	1.48
45490334--45490374	14	2.9	14	81	0	55	12	0	51	36	1.40
45493792--45493852	28	2.2	28	85	5	79	32	9	24	32	1.88
45493861--45493887	5	5.4	5	100	0	54	18	0	0	81	0.69
45494321--45494353	17	1.9	17	100	0	66	24	9	18	48	1.76
45494724--45494951	43	5.3	43	88	0	294	19	16	32	31	1.94
45495016--45495057	22	1.9	22	95	0	75	40	28	21	9	1.84
45497005--45497049	19	2.4	19	88	7	65	31	22	8	37	1.85
45499788--45499849	9	7.0	9	75	3	63	80	12	4	1	0.94
45500629--45500805	97	1.9	92	89	5	273	27	15	8	48	1.74
45501277--45501334	24	2.4	24	85	0	80	34	10	24	31	1.89
45501629--45502419	50	15.8	50	66	7	280	29	21	23	24	1.99
45501637--45502429	100	7.9	100	92	0	1237	29	22	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45502470--45502934	82	5.7	82	85	4	534	31	24	20	23	1.98
45502486--45502934	124	3.7	123	83	6	490	31	24	19	24	1.98
45502494--45502934	206	2.2	204	90	2	695	30	24	19	24	1.98
45503265--45503305	19	2.2	19	86	8	57	58	34	0	7	1.26
45504841--45504931	46	2.0	47	82	2	112	48	3	7	40	1.48
45504920--45504968	18	2.6	20	78	15	59	14	6	2	77	1.05
45505005--45505031	14	1.9	14	100	0	54	44	7	0	48	1.31
45505258--45505354	7	13.9	7	81	4	106	30	48	1	19	1.56
45505453--45505477	12	2.1	12	100	0	50	32	52	0	16	1.44
45505861--45506078	114	1.9	113	80	8	255	29	22	15	32	1.95
45506014--45506153	74	1.9	75	88	4	212	29	22	17	30	1.97
45505888--45506288	188	2.1	188	92	0	667	30	22	15	31	1.95
45506070--45506663	227	2.6	225	89	3	892	28	20	16	33	1.95
45506088--45506668	113	5.1	112	73	10	520	29	20	16	33	1.94
45514185--45514425	85	2.7	86	83	5	277	36	27	16	19	1.93
45514185--45514431	43	5.6	43	78	6	235	35	27	17	19	1.94
45515150--45515176	2	13.5	2	100	0	54	51	48	0	0	1.00
45517005--45517055	26	1.9	27	92	4	86	11	23	19	45	1.83
45517626--45518078	109	4.2	109	95	0	791	38	12	14	33	1.85
45517626--45518078	217	2.1	218	94	0	800	38	12	14	33	1.85
45518477--45518623	31	5.0	30	70	20	87	40	42	1	15	1.56
45518535--45518576	20	2.1	20	100	0	84	47	38	0	14	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45518844--45518886	18	2.3	18	84	8	50	46	32	0	20	1.51
45518865--45518922	30	1.9	30	82	10	73	41	37	0	20	1.53
45518895--45518964	21	3.3	21	73	11	63	42	37	1	18	1.59
45519179--45519451	114	2.4	113	87	3	388	26	27	21	24	1.99
45519383--45519464	41	2.0	41	87	0	119	28	30	21	19	1.98
45519395--45519492	41	2.4	41	85	0	124	34	27	17	20	1.95
45519269--45519610	156	2.2	155	86	3	483	26	28	22	22	1.99
45519424--45519792	114	3.2	113	89	2	542	26	26	23	23	2.00
45522949--45523036	33	2.7	33	77	11	92	45	19	9	26	1.80
45523015--45523081	34	1.9	35	87	3	100	46	11	8	32	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204