genome.fa.s26.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  132  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40666348--40666398	17	3.0	16	86	11	66	80	1	15	1	0.89
40666359--40666396	13	3.0	13	88	11	53	78	2	18	0	0.86
40667328--40667693	89	4.1	89	82	1	387	30	24	21	22	1.99
40667354--40668240	133	6.7	133	77	7	791	29	24	22	23	1.99
40667486--40668240	89	8.5	89	84	2	876	29	24	22	23	1.99
40667359--40668240	222	4.0	222	77	6	883	29	24	22	23	1.99
40667587--40668229	355	1.8	356	87	1	966	29	23	22	23	1.99
40667486--40668287	266	3.0	266	82	3	945	28	24	22	24	1.99
40668241--40668353	44	2.6	44	79	8	106	29	15	24	30	1.95
40668373--40668573	88	2.3	87	78	5	208	25	20	26	26	1.99
40668193--40668614	220	1.9	221	78	5	460	27	19	25	27	1.99
40668460--40668664	44	4.5	44	79	5	162	29	19	23	27	1.98
40668547--40668663	45	2.5	45	84	5	144	30	19	20	29	1.97
40668796--40668905	44	2.5	44	86	0	139	28	20	20	30	1.97
40668837--40668951	44	2.6	44	84	5	135	29	20	21	27	1.98
40679870--40679906	7	5.4	7	87	12	51	89	0	10	0	0.49
40680276--40680341	29	2.3	28	80	14	73	21	12	18	48	1.80
40685196--40685409	47	4.5	47	76	8	209	25	22	17	33	1.96
40685199--40685409	94	2.2	95	82	4	239	25	22	18	33	1.96
40687411--40687605	51	3.9	50	79	5	223	30	28	17	24	1.97
40687418--40687601	100	1.8	101	88	4	282	30	27	17	23	1.97
40692754--40693016	134	2.0	127	91	5	418	35	8	12	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40697167--40697334	60	2.8	59	83	4	185	13	28	18	39	1.88
40703422--40703570	28	5.3	28	85	0	199	29	20	18	31	1.96
40703422--40703570	14	10.6	14	68	0	91	29	20	18	31	1.96
40706627--40706660	17	1.9	18	94	5	61	17	5	20	55	1.62
40707552--40707646	43	2.2	43	92	3	156	30	29	15	24	1.96
40707565--40707673	43	2.5	44	86	4	150	33	29	11	25	1.92
40707762--40707848	44	2.0	44	100	0	174	47	20	11	20	1.81
40713424--40713777	9	37.8	9	71	13	171	34	2	19	43	1.64
40713428--40713583	56	2.8	57	90	2	253	33	0	21	44	1.57
40713385--40713590	65	3.1	65	82	8	213	33	0	20	45	1.58
40714091--40714166	23	3.3	23	92	0	134	30	26	21	22	1.99
40717144--40717188	21	2.1	21	87	0	63	46	11	28	13	1.77
40718167--40718526	7	50.6	7	70	12	99	43	33	1	21	1.60
40718353--40718521	43	4.1	42	68	15	138	45	33	0	20	1.56
40718524--40718734	118	1.8	116	82	4	271	29	19	18	32	1.96
40718711--40719014	164	1.9	164	83	0	401	23	23	20	32	1.98
40719904--40719934	16	1.9	16	100	0	62	6	0	38	54	1.26
40722065--40722264	42	4.6	42	82	6	240	30	14	25	30	1.95
40726971--40727012	20	2.0	21	90	4	68	50	0	0	50	1.00
40728388--40728440	22	2.3	23	80	3	63	58	0	7	33	1.26
40729743--40729781	18	2.2	18	86	4	53	30	25	25	17	1.97
40734491--40734581	35	2.6	35	82	5	94	38	24	19	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40736482--40736512	15	2.0	16	93	6	55	0	0	70	29	0.87
40737711--40737749	19	2.1	19	95	0	69	46	12	10	30	1.75
40740643--40740672	7	4.3	7	100	0	60	60	0	0	40	0.97
40741191--40741250	31	2.0	31	93	3	104	60	0	1	38	1.07
40741191--40741290	39	2.5	40	90	3	148	61	0	3	36	1.12
40758338--40758435	48	2.0	48	100	0	196	45	11	6	36	1.65
40762674--40762740	21	3.2	21	74	4	55	19	26	23	29	1.98
40767166--40767200	18	1.9	18	88	11	54	22	20	0	57	1.41
40767214--40767289	30	2.5	30	72	4	82	7	21	2	68	1.28
40767214--40767313	12	8.2	12	67	13	53	6	19	2	73	1.14
40767257--40767313	8	7.0	8	73	11	53	3	17	0	78	0.88
40768276--40768313	3	12.7	3	100	0	76	68	0	0	31	0.90
40768347--40768375	11	2.6	11	100	0	58	13	0	6	79	0.93
40769480--40769518	10	3.7	11	86	10	55	30	25	12	30	1.93
40769480--40769518	21	1.9	20	89	5	60	30	25	12	30	1.93
40769480--40769524	20	2.2	20	84	7	56	28	26	15	28	1.96
40771218--40771259	22	2.0	21	85	4	57	30	2	11	54	1.49
40774099--40774169	13	5.7	12	73	8	52	71	0	18	9	1.12
40774202--40774241	21	1.9	21	84	0	53	42	5	32	20	1.73
40776038--40776079	22	2.0	21	90	4	66	28	0	14	57	1.38
40784629--40784659	3	10.7	3	93	6	55	32	0	0	67	0.91
40786442--40786510	36	1.9	36	85	5	95	59	5	7	27	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40800511--40800557	19	2.4	20	82	10	53	48	23	8	19	1.75
40806892--40806945	24	2.2	24	80	12	56	31	1	18	48	1.59
40808282--40808338	25	2.3	25	87	6	80	22	28	35	14	1.93
40811659--40811739	6	12.7	6	75	17	65	80	6	3	9	1.01
40813437--40813481	15	2.9	16	83	9	58	71	0	6	22	1.09
40813419--40813481	27	2.2	30	83	13	80	73	0	7	19	1.08
40815338--40815376	17	2.3	17	100	0	78	30	25	12	30	1.93
40818798--40818865	26	2.7	25	72	4	64	75	4	2	17	1.10
40831364--40831397	16	2.1	16	88	0	50	41	20	2	35	1.68
40835885--40835933	24	2.0	24	100	0	98	46	20	12	20	1.82
40837937--40837981	17	2.6	17	92	3	72	46	11	8	33	1.70
40845943--40846127	79	2.3	81	84	7	236	25	27	22	24	2.00
40845943--40846127	40	4.7	40	83	7	234	25	27	22	24	2.00
40853772--40853956	79	2.3	81	84	7	236	25	27	22	24	2.00
40853772--40853956	40	4.7	40	83	7	234	25	27	22	24	2.00
40858331--40858367	19	1.9	19	100	0	74	32	21	29	16	1.95
40858352--40858556	27	7.6	27	86	3	259	26	15	27	30	1.96
40858353--40858556	109	1.9	108	89	3	320	26	15	27	30	1.96
40866001--40866224	27	8.6	27	80	10	241	26	15	27	30	1.96
40866030--40866068	19	2.1	19	100	0	78	25	17	25	30	1.97
40866049--40866203	82	1.9	81	88	4	231	27	15	27	29	1.96
40866049--40866224	82	2.2	81	84	3	219	26	15	27	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40875521--40875600	42	1.9	42	84	0	106	20	30	21	28	1.98
40879668--40879758	6	14.3	6	78	11	83	78	7	1	13	1.02
40879668--40879758	19	4.7	19	77	17	98	78	7	1	13	1.02
40881935--40882082	55	2.8	53	81	2	179	22	14	20	42	1.88
40881862--40882082	108	2.0	108	83	3	275	23	15	18	42	1.88
40881892--40882078	27	6.9	27	79	4	171	22	15	18	43	1.87
40899205--40899486	107	2.6	108	87	3	401	44	23	15	16	1.85
40899210--40899486	27	10.3	27	86	1	378	44	23	15	16	1.86
40899210--40899486	80	3.4	81	86	1	396	44	23	15	16	1.86
40901460--40901496	19	2.0	19	89	5	58	51	2	8	37	1.46
40901494--40901575	40	2.0	40	88	4	121	40	10	15	32	1.83
40903708--40903749	21	2.0	21	86	4	59	33	7	11	47	1.68
40916682--40916717	19	1.9	18	88	5	54	47	2	8	41	1.48
40916715--40916796	40	2.0	40	81	9	96	41	10	13	34	1.79
40923345--40923373	12	2.3	13	94	5	51	65	6	6	20	1.40
40942588--40942628	12	3.3	13	80	10	50	19	2	31	46	1.63
40943207--40943259	25	2.1	25	85	0	70	22	28	33	15	1.94
40948168--40948240	12	5.8	12	78	9	65	79	5	8	6	1.05
40948175--40948215	21	2.0	21	95	0	73	78	7	7	7	1.11
40948179--40948259	30	2.8	26	80	14	90	80	4	8	6	1.02
40948200--40948247	6	7.8	6	86	4	69	83	2	12	2	0.83
40949826--40949893	28	2.4	30	81	16	83	70	2	8	17	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40949833--40949898	22	3.0	21	76	19	57	71	3	7	18	1.23
40950806--40950862	29	1.9	30	85	3	80	19	33	29	17	1.95
40954832--40954910	37	2.1	37	88	0	113	37	25	6	30	1.81
40955129--40955332	41	5.0	41	93	0	345	23	27	18	30	1.97
40955555--40955598	17	2.7	17	89	6	65	43	18	2	36	1.63
40962747--40962836	37	2.5	37	87	7	125	35	26	10	27	1.88
40963057--40963219	41	4.0	41	91	0	263	23	27	18	30	1.98
40963057--40963219	82	2.0	82	96	0	299	23	27	18	30	1.98
40963441--40963484	17	2.7	17	89	6	65	43	18	2	36	1.63
40963535--40963622	43	2.0	43	100	0	176	38	15	9	36	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204