genome.fa.s26.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  123  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38251299--38251334	19	1.9	18	88	5	54	55	0	0	44	0.99
38253553--38253704	49	3.1	49	78	1	171	19	26	25	28	1.99
38260760--38260831	36	2.0	36	91	5	119	23	22	8	45	1.79
38261960--38261985	13	2.0	13	100	0	52	61	30	0	7	1.24
38273402--38273519	42	2.8	42	80	1	128	33	27	15	23	1.95
38273402--38273515	43	2.7	43	81	1	131	33	28	14	23	1.94
38284980--38285028	25	2.0	25	88	8	73	22	22	16	38	1.92
38285008--38285065	25	2.3	25	87	0	80	24	20	24	31	1.98
38290121--38290168	19	2.5	19	83	9	62	27	2	0	70	0.98
38290127--38290170	14	3.3	13	84	12	54	25	2	0	72	0.96
38295959--38296150	50	3.8	50	86	1	251	25	22	30	21	1.99
38298317--38298350	9	3.8	9	88	11	52	20	0	2	76	0.92
38298312--38298350	15	2.4	17	87	12	55	20	0	2	76	0.90
38303303--38303341	18	2.2	18	95	0	69	28	2	10	58	1.44
38303553--38303588	7	5.1	7	89	0	54	2	52	0	44	1.15
38307223--38307383	77	2.1	77	97	0	304	34	8	14	42	1.76
38308352--38308389	11	3.5	11	100	0	76	47	26	0	26	1.52
38311415--38311623	92	2.3	91	85	5	269	45	3	4	46	1.41
38311551--38311598	26	1.9	25	84	16	64	45	0	2	52	1.12
38311677--38311995	66	5.2	63	66	22	223	42	2	5	48	1.42
38311642--38312051	120	3.4	120	96	1	734	43	2	5	49	1.38
38311764--38311815	15	3.6	15	80	12	56	44	0	1	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38311884--38311935	15	3.6	15	80	12	56	44	0	1	53	1.11
38312013--38312054	15	2.7	16	82	14	52	45	0	2	52	1.13
38312004--38312045	15	2.9	15	82	10	52	47	0	0	52	1.00
38311655--38312134	240	2.0	236	83	9	591	44	3	4	47	1.40
38311988--38312300	153	2.0	156	91	2	506	46	5	4	43	1.46
38312423--38312458	16	2.2	16	100	0	72	38	36	0	25	1.56
38315787--38315821	17	2.0	18	88	5	54	71	0	0	28	0.86
38318706--38318768	21	3.0	20	75	6	63	17	22	12	47	1.81
38318711--38318810	42	2.4	42	84	3	121	19	22	15	44	1.87
38318719--38318783	21	3.1	21	73	4	60	23	23	12	41	1.87
38322527--38322731	64	3.3	62	81	6	191	44	15	9	30	1.77
38322570--38322706	32	4.4	32	85	2	190	43	14	10	31	1.79
38322570--38322710	64	2.3	62	92	3	230	42	14	10	31	1.80
38326099--38326218	60	2.0	60	100	0	240	36	13	21	28	1.91
38333383--38333407	11	2.3	11	100	0	50	28	0	0	72	0.86
38339732--38339878	43	3.4	44	77	5	149	29	15	22	31	1.95
38342679--38342728	23	2.2	22	86	10	73	30	26	20	24	1.98
38352466--38352531	26	2.5	26	90	0	96	22	24	27	25	2.00
38355764--38355833	28	2.5	28	90	0	104	40	18	14	27	1.89
38355764--38355841	28	2.8	28	88	0	84	38	17	16	26	1.92
38357257--38357286	16	1.9	15	93	6	51	53	16	0	30	1.44
38358750--38358803	26	2.0	26	85	10	72	7	24	3	64	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38359676--38359812	49	2.8	49	89	0	202	32	25	13	28	1.94
38360985--38361082	23	4.3	23	80	2	126	29	25	20	24	1.99
38371154--38371204	27	1.9	26	92	4	84	80	5	7	5	1.02
38371214--38371262	13	3.8	13	81	5	55	77	0	18	4	0.92
38371226--38371265	13	3.0	14	85	10	57	80	0	20	0	0.72
38373338--38373819	88	5.5	87	87	2	599	27	25	24	22	2.00
38373568--38373794	43	5.2	43	69	12	174	24	28	26	21	1.99
38373556--38373779	44	5.1	43	67	12	159	25	29	26	19	1.98
38374041--38374134	44	2.1	44	90	0	143	30	20	22	26	1.98
38373944--38374133	98	1.9	97	82	6	231	32	18	21	26	1.97
38374055--38374154	44	2.3	44	80	3	121	34	19	18	29	1.95
38373944--38374209	142	1.9	142	97	0	505	33	18	19	27	1.96
38373944--38374239	142	2.1	142	91	1	486	34	18	20	26	1.96
38374217--38374503	50	5.7	50	83	0	331	32	25	20	21	1.97
38374198--38374505	100	3.1	100	82	0	393	32	25	19	21	1.97
38378357--38378475	47	2.7	45	73	7	118	26	3	10	59	1.45
38380232--38380311	36	2.2	36	80	4	90	72	2	17	7	1.19
38386148--38386189	22	1.9	22	85	0	57	23	4	0	71	1.05
38398333--38398471	44	3.2	44	66	15	124	28	25	21	24	1.99
38398365--38398502	43	3.2	43	67	8	134	28	21	23	25	1.99
38398319--38398654	88	3.9	88	88	3	439	30	22	22	24	1.99
38398377--38398515	44	3.2	44	67	8	138	26	21	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38398319--38398717	88	4.6	88	85	5	393	31	22	22	23	1.99
38398799--38399234	46	9.9	46	72	10	295	30	20	23	26	1.98
38398677--38399234	174	3.2	174	93	2	903	30	19	22	26	1.98
38398761--38399270	87	5.8	87	72	7	397	30	20	22	26	1.98
38399260--38399303	21	2.1	21	87	8	63	36	25	34	4	1.76
38401365--38401406	22	1.9	22	85	0	57	23	4	0	71	1.05
38407225--38407349	54	2.3	54	97	0	232	8	28	32	30	1.87
38418407--38418456	24	2.0	25	84	3	66	34	0	38	28	1.57
38419122--38419344	27	8.3	27	84	0	266	42	21	16	20	1.89
38419122--38419373	81	3.1	79	80	10	260	41	20	17	21	1.91
38424489--38424560	35	2.1	35	97	0	135	31	18	23	26	1.97
38439762--38439878	37	3.2	34	73	17	101	52	3	2	41	1.31
38439777--38439831	25	2.2	25	81	12	60	49	5	1	43	1.36
38445608--38445634	13	2.1	13	100	0	54	40	14	14	29	1.86
38448685--38448824	75	1.9	75	82	5	176	28	25	12	32	1.93
38453889--38453957	37	1.9	35	85	5	93	14	13	10	62	1.55
38454958--38458986	511	7.9	511	95	0	7137	30	12	21	34	1.91
38459624--38461182	512	3.0	513	93	1	2609	29	12	23	34	1.91
38465438--38465487	14	3.6	14	81	7	50	38	36	2	24	1.67
38466471--38466534	19	3.4	19	78	4	85	35	10	1	51	1.47
38466627--38466783	82	1.9	82	97	0	296	44	10	5	39	1.62
38466852--38466947	19	5.2	19	81	5	124	48	0	13	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38466852--38466947	37	2.6	37	98	0	183	48	0	13	37	1.43
38467620--38467680	26	2.2	28	91	5	99	52	0	6	40	1.27
38467620--38467683	28	2.4	26	92	5	101	50	0	9	40	1.35
38470151--38470216	28	2.4	28	89	5	107	16	36	16	30	1.91
38479824--38479943	41	2.9	41	83	4	145	30	23	17	29	1.97
38485425--38485491	30	2.2	29	84	10	82	4	22	1	71	1.12
38488065--38488139	24	3.2	24	72	12	68	25	14	16	44	1.85
38490182--38490381	89	2.3	90	86	4	282	39	21	9	31	1.84
38490384--38490437	7	7.9	7	75	19	51	57	0	0	42	0.98
38490414--38490476	28	2.2	28	81	13	76	57	1	3	38	1.24
38490414--38490476	27	2.2	29	83	8	85	57	1	3	38	1.24
38490723--38490818	29	3.3	28	72	16	79	35	3	3	58	1.30
38490748--38490789	9	4.6	9	85	5	57	30	2	0	66	1.04
38490702--38490792	28	3.1	28	77	12	85	31	3	2	62	1.23
38490740--38490789	19	2.7	18	78	9	64	34	2	0	64	1.05
38490777--38490852	22	3.7	20	74	11	82	34	3	3	57	1.35
38490951--38491123	86	2.0	88	87	2	251	32	9	21	36	1.85
38494758--38494815	21	2.9	21	79	5	66	56	3	1	37	1.26
38495098--38495143	10	4.7	10	78	10	51	39	2	0	58	1.10
38499247--38499331	26	3.3	26	83	9	95	43	14	15	27	1.85
38502234--38502276	14	2.9	15	83	13	54	18	16	16	48	1.81
38506032--38506073	18	2.4	18	80	11	52	30	2	0	66	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38507689--38507829	51	2.8	51	84	3	178	22	17	28	31	1.97
38507689--38507822	50	2.7	50	85	3	180	22	17	28	32	1.96
38507826--38507920	45	2.1	45	92	0	163	26	18	24	30	1.98
38510084--38510160	30	2.7	28	83	14	104	64	3	0	31	1.11
38517071--38517134	22	3.0	22	71	19	64	51	9	10	28	1.68
38520731--38520785	28	1.9	29	88	3	85	45	3	1	49	1.30
38521962--38521996	3	11.7	3	100	0	70	68	0	0	31	0.90
38529947--38529984	17	2.2	17	90	0	58	44	2	2	50	1.30
38539128--38539247	42	2.8	43	82	5	145	24	18	27	30	1.98
38542770--38542890	64	1.9	61	86	5	170	38	3	1	56	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204