genome.fa.s26.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  96  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29975190--29975214	13	1.9	13	100	0	50	32	28	16	24	1.96
29976448--29976480	17	1.9	17	88	11	50	69	0	27	3	1.03
29977096--29977167	32	2.2	32	85	7	101	13	31	1	52	1.49
29977221--29977260	21	1.9	21	84	0	53	27	30	17	25	1.97
29977294--29977363	31	2.3	32	80	9	83	22	8	22	45	1.79
29977347--29977404	20	2.9	20	92	0	98	29	1	34	34	1.68
29978827--29978869	18	2.4	18	96	0	77	34	6	18	39	1.78
29979077--29979135	22	2.8	20	73	14	55	38	0	3	57	1.15
29983157--29983196	21	1.9	21	85	10	55	35	20	0	45	1.51
29993100--29993162	24	2.6	24	80	5	65	14	39	7	38	1.75
29993108--29993168	24	2.5	24	83	0	68	13	37	8	40	1.74
29996033--29996065	10	3.4	10	83	8	50	30	0	0	69	0.88
29996029--29996065	19	2.1	18	90	10	58	27	0	0	72	0.84
29999296--29999475	74	2.4	74	94	0	315	27	24	16	32	1.96
30000946--30001012	32	2.1	32	83	5	82	16	17	37	28	1.92
30002574--30002792	90	2.4	88	84	8	271	37	20	8	33	1.82
30003130--30003250	17	6.8	17	70	17	68	31	1	1	65	1.12
30003146--30003233	19	4.6	19	74	13	74	28	2	2	67	1.15
30003185--30003249	9	7.4	9	75	17	66	29	0	1	69	0.98
30003175--30003265	36	2.5	36	84	10	105	29	2	1	67	1.10
30003163--30003250	8	9.7	9	72	15	58	31	1	1	65	1.07
30003146--30003266	10	12.8	10	70	15	62	30	2	1	65	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30003139--30003264	18	6.9	19	68	16	79	29	2	1	66	1.13
30003273--30003439	86	2.0	85	88	7	250	31	7	21	39	1.82
30003276--30003461	86	2.2	83	80	10	222	31	7	18	42	1.78
30005151--30005209	26	2.2	27	85	8	77	62	0	1	35	1.05
30005151--30005199	25	1.9	26	84	12	66	63	0	2	34	1.06
30006287--30006355	34	2.0	34	88	5	104	53	17	4	24	1.62
30006918--30006953	16	2.2	16	95	0	63	38	2	33	25	1.70
30007189--30007235	18	2.6	18	90	6	69	57	0	0	42	0.98
30007169--30007646	120	4.0	120	98	1	917	52	4	0	42	1.26
30007493--30007536	21	2.1	21	83	8	54	56	6	0	36	1.26
30007817--30007844	9	3.1	9	100	0	56	42	14	10	32	1.80
30009048--30009151	49	2.1	49	92	0	172	50	9	7	31	1.63
30011469--30011500	15	2.1	15	100	0	64	75	0	0	25	0.81
30011752--30011825	36	2.1	36	87	5	105	47	17	5	29	1.70
30015648--30015811	70	2.3	70	84	8	208	30	19	20	29	1.97
30019084--30019119	17	2.1	17	94	0	63	77	5	2	13	1.05
30020218--30020260	14	3.1	14	86	3	52	74	4	18	2	1.10
30020223--30020261	14	2.9	14	88	3	53	74	2	23	0	0.94
30020487--30020511	12	2.1	12	100	0	50	56	0	8	36	1.29
30022192--30022231	21	1.9	21	84	0	53	17	5	25	52	1.64
30025343--30025392	20	2.5	20	80	3	55	30	10	18	42	1.82
30028449--30028490	21	2.0	21	100	0	84	19	33	4	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30029024--30029049	13	2.0	13	100	0	52	46	0	30	23	1.53
30031446--30031472	12	2.2	12	100	0	54	33	7	11	48	1.67
30035063--30035099	18	2.1	18	94	0	65	54	13	5	27	1.61
30041072--30041125	11	4.8	12	80	19	71	27	31	0	40	1.57
30041087--30041184	51	1.9	51	85	4	135	28	24	1	45	1.60
30046695--30047116	125	3.4	125	84	3	580	30	20	18	30	1.96
30047721--30047805	20	4.2	20	77	15	59	60	4	2	32	1.30
30047751--30047796	21	2.2	21	84	7	58	65	4	0	30	1.12
30047750--30047805	11	5.4	10	75	12	51	62	3	0	33	1.12
30052205--30052330	62	2.0	62	87	0	180	26	15	13	44	1.84
30053016--30053066	22	2.3	22	96	0	93	27	31	0	41	1.56
30053072--30053119	20	2.3	20	86	10	62	39	2	0	58	1.10
30054176--30054200	7	3.6	7	100	0	50	28	0	12	60	1.32
30055132--30055187	24	2.3	24	84	0	76	42	30	25	1	1.65
30055393--30055839	9	47.0	10	63	29	112	50	23	0	25	1.53
30055386--30055894	57	8.9	57	92	2	774	50	22	0	26	1.52
30055386--30055894	85	6.0	85	88	4	706	50	22	0	26	1.52
30055906--30055930	10	2.5	10	100	0	50	44	8	0	48	1.32
30061396--30061591	51	3.8	51	91	1	259	20	29	29	20	1.98
30067047--30067083	7	4.9	8	86	6	51	35	0	0	64	0.94
30067010--30067065	20	2.9	19	75	19	53	37	0	1	60	1.07
30067015--30067071	28	2.0	29	89	3	89	42	0	1	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30066997--30067096	45	2.1	47	82	12	127	41	1	1	57	1.12
30067654--30067692	19	2.0	20	85	5	53	58	2	0	38	1.12
30067821--30067881	22	2.8	22	80	9	70	4	50	8	36	1.54
30067830--30067881	22	2.3	23	83	9	72	5	51	5	36	1.50
30074575--30074599	7	3.6	7	100	0	50	28	0	12	60	1.32
30075712--30075759	25	1.9	25	100	0	96	50	0	10	39	1.37
30075777--30075824	25	1.9	25	95	0	87	43	0	14	41	1.45
30075827--30075872	9	5.2	9	97	2	85	30	0	10	58	1.32
30075690--30075846	65	2.3	66	83	5	226	42	0	11	45	1.40
30075903--30077157	23	56.2	23	81	8	1267	47	24	0	27	1.54
30075903--30077157	45	28.1	45	86	7	1223	47	24	0	27	1.54
30077213--30077509	54	5.2	54	65	15	179	41	8	5	44	1.59
30077152--30077457	54	5.2	60	65	16	194	39	8	7	44	1.63
30077152--30077509	115	3.1	115	95	1	637	40	8	6	44	1.62
30084954--30085058	54	1.9	54	86	0	147	21	25	23	28	1.99
30097201--30097241	18	2.4	18	88	8	59	48	7	0	43	1.30
30097070--30097367	91	3.3	91	91	3	492	47	3	3	45	1.35
30097384--30097436	17	3.2	17	77	20	58	41	3	1	52	1.30
30097384--30097422	16	2.4	17	87	12	55	43	2	0	53	1.14
30097417--30097604	61	3.1	61	68	19	176	40	2	7	48	1.44
30097491--30097537	16	3.0	16	78	12	53	46	0	2	51	1.13
30097491--30097537	15	3.0	15	81	12	51	46	0	2	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30097408--30097654	120	2.0	121	95	0	442	42	1	6	49	1.38
30097611--30097652	15	2.7	16	82	14	52	45	0	2	52	1.13
30097602--30097643	15	2.9	15	82	10	52	47	0	0	52	1.00
30101858--30101976	23	5.2	23	81	0	139	32	21	20	26	1.97
30101865--30101976	46	2.4	46	89	0	161	33	22	19	25	1.97
30104301--30104364	25	2.4	27	76	10	69	29	1	1	67	1.09
30108820--30108870	18	2.6	19	75	9	50	47	0	3	49	1.20
30115795--30115918	42	3.0	41	78	7	133	31	25	15	27	1.96
30120650--30120712	33	1.9	33	83	6	83	28	20	1	49	1.58
30120907--30121053	61	2.4	61	98	1	285	56	8	4	29	1.51
30120951--30121044	28	3.2	28	62	24	66	55	9	4	30	1.51
30121862--30121898	18	2.1	18	89	0	56	56	0	0	43	0.99
30124452--30124558	21	5.2	21	83	6	123	13	22	19	44	1.85
30144033--30144087	20	2.8	20	78	13	60	67	1	3	27	1.17
30144913--30145040	31	4.2	31	72	9	104	34	13	10	41	1.79
30146109--30146165	17	3.0	18	76	20	62	61	5	22	10	1.48
30147414--30147743	165	2.0	165	96	0	606	32	19	10	37	1.86
30149704--30149741	20	2.0	20	89	5	60	47	10	10	31	1.72
30149843--30149885	22	2.0	22	90	9	70	18	23	23	34	1.96
30151370--30151402	11	3.0	11	87	12	50	72	0	0	27	0.85
30154273--30154309	2	18.5	2	100	0	74	51	0	0	48	1.00
30154776--30154843	25	2.7	26	80	8	79	76	2	1	19	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30155095--30155140	17	2.7	18	83	16	62	65	2	0	32	1.05
30155843--30155914	36	2.0	36	83	5	92	31	1	0	66	1.00
30155861--30155931	30	2.4	29	74	4	72	38	2	0	59	1.12
30176798--30176845	16	2.9	17	81	9	55	81	4	6	8	0.98
30185367--30185404	18	2.1	18	85	9	51	52	10	7	28	1.64
30190564--30190599	15	2.3	15	90	4	54	50	0	0	50	1.00
30190728--30190757	9	3.4	9	95	4	53	73	0	0	26	0.84
30190769--30190807	20	2.0	20	89	0	60	71	0	2	25	0.98
30195700--30195817	13	8.6	14	67	14	66	24	12	41	21	1.88
30195743--30195831	40	2.2	40	78	5	101	28	11	39	21	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204