genome.fa.s26.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  139  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42519564--42519613	19	2.6	19	90	9	75	60	4	2	34	1.27
42523235--42523281	21	2.2	21	92	0	76	23	14	27	34	1.94
42524789--42524828	14	2.9	14	84	0	53	32	7	17	42	1.77
42524812--42524851	20	2.0	20	90	0	62	27	10	12	50	1.72
42524797--42524863	34	1.9	35	90	3	109	31	8	13	46	1.74
42524791--42524867	14	5.0	15	71	20	52	32	9	15	42	1.78
42526148--42526174	13	2.1	13	100	0	54	55	14	7	22	1.64
42525889--42526447	272	2.0	272	95	0	1001	39	19	15	25	1.91
42531988--42532045	30	1.9	30	85	0	80	50	36	8	5	1.56
42532005--42532071	34	2.0	34	87	0	98	44	34	11	8	1.73
42536193--42536226	9	3.6	9	92	8	50	52	0	0	47	1.00
42536819--42536870	7	7.6	7	80	4	61	28	9	0	61	1.27
42536779--42536889	28	4.0	28	77	10	86	28	18	1	51	1.56
42536776--42536889	14	8.2	14	74	11	74	29	17	1	50	1.56
42536813--42536857	21	2.1	21	87	4	63	26	8	0	64	1.23
42536819--42536872	14	4.0	13	90	7	81	29	11	0	59	1.32
42536911--42536940	15	1.9	16	93	6	53	16	10	6	66	1.41
42539358--42539395	18	2.1	18	90	0	58	55	7	7	28	1.57
42541573--42541624	26	2.0	26	82	17	65	53	3	0	42	1.19
42547433--42547649	51	4.3	51	96	0	380	29	25	14	30	1.95
42552997--42553171	74	2.4	74	89	0	260	34	22	20	22	1.97
42561205--42561255	26	1.9	27	84	11	70	41	3	3	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42562967--42563005	2	19.5	2	100	0	78	48	0	0	51	1.00
42567941--42569292	675	2.0	675	99	0	2695	22	28	16	31	1.96
42572610--42572658	24	2.0	26	84	15	68	10	16	0	73	1.09
42573794--42573832	20	2.0	19	85	5	51	51	2	0	46	1.14
42575707--42576008	151	2.0	151	98	0	586	32	18	14	35	1.91
42582638--42582683	21	2.2	21	88	7	67	26	19	34	19	1.96
42602603--42602651	16	2.9	16	77	11	53	61	2	2	34	1.19
42602601--42602652	17	3.1	16	74	17	52	63	1	1	32	1.16
42611559--42611862	108	2.8	108	83	3	335	37	15	21	25	1.92
42611753--42612062	87	3.6	87	80	1	246	39	15	20	24	1.91
42614564--42614898	106	3.2	105	88	4	494	35	15	17	32	1.91
42615164--42615206	17	2.4	18	80	11	52	74	0	4	20	1.00
42615230--42615254	13	1.9	13	100	0	50	76	0	0	24	0.80
42615630--42615971	106	3.2	106	91	2	519	31	17	15	35	1.91
42617271--42617299	15	1.9	15	100	0	58	41	0	0	58	0.98
42622648--42622684	14	2.6	15	83	8	51	64	0	21	13	1.27
42624217--42624607	50	7.8	50	70	1	235	28	21	25	25	1.99
42624226--42624615	200	2.0	200	87	1	566	27	22	24	25	2.00
42624226--42624615	100	3.9	100	85	2	514	27	22	24	25	2.00
42626168--42626209	22	1.9	22	90	0	66	30	4	2	61	1.29
42626294--42626347	16	3.5	16	77	5	58	38	9	1	50	1.45
42626294--42626345	14	3.6	14	75	10	50	38	9	1	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42633577--42633999	44	9.6	44	69	13	189	30	20	22	26	1.98
42633666--42633960	45	6.7	45	72	11	191	27	21	24	26	1.99
42633625--42633911	129	2.2	132	81	6	334	28	20	24	26	1.99
42633666--42633991	174	1.9	173	79	5	372	29	21	22	26	1.99
42634511--42634602	19	4.8	19	90	0	148	36	8	16	38	1.79
42634511--42634602	38	2.4	38	96	0	166	36	8	16	38	1.79
42638919--42638957	20	2.0	20	89	0	60	71	2	0	25	0.98
42638923--42639069	10	15.4	9	68	16	57	61	3	1	33	1.21
42639166--42639220	19	2.8	20	79	17	62	70	5	0	23	1.07
42639802--42639873	20	3.8	20	70	14	62	37	0	5	56	1.22
42643268--42643399	67	2.0	67	93	0	228	28	31	18	21	1.97
42643545--42643659	57	1.9	59	88	10	173	23	25	23	27	2.00
42646770--42646794	13	1.9	13	100	0	50	60	0	8	32	1.26
42657513--42657551	17	2.4	16	87	8	60	48	0	0	51	1.00
42657765--42657854	45	2.0	44	93	2	153	27	17	11	43	1.83
42662738--42662846	54	2.0	53	96	1	200	28	16	24	30	1.97
42665037--42665181	70	2.1	70	98	0	281	29	12	20	37	1.89
42666776--42666863	44	2.0	44	100	0	176	34	11	22	31	1.90
42672365--42672420	3	18.7	3	92	0	94	30	35	1	32	1.68
42679027--42679063	13	3.0	13	88	7	51	54	0	0	45	1.00
42681272--42681576	169	1.8	161	84	8	407	33	12	9	44	1.75
42681530--42681588	27	2.1	28	81	9	68	27	16	15	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42681712--42681749	16	2.2	18	90	9	62	73	0	0	26	0.83
42722386--42722530	41	3.6	41	81	0	166	28	20	27	24	1.99
42724765--42724801	14	2.4	16	82	13	51	37	13	5	43	1.67
42726575--42726639	32	2.0	32	96	0	121	12	16	24	46	1.82
42726615--42726655	21	2.0	21	100	0	82	19	19	26	34	1.96
42728107--42728147	21	2.0	21	90	0	64	53	17	4	24	1.63
42728152--42728189	20	1.9	20	94	0	67	47	13	7	31	1.71
42728139--42728203	34	1.9	33	87	9	96	46	13	6	33	1.69
42729119--42729169	9	5.8	9	90	4	77	23	9	29	37	1.87
42729119--42729168	17	2.9	17	84	3	73	24	10	30	36	1.88
42729856--42729896	21	1.9	22	90	5	66	63	2	4	29	1.28
42730603--42731019	228	1.8	229	84	5	567	27	22	19	29	1.98
42731354--42731394	13	3.1	14	86	6	50	21	7	24	46	1.77
42731591--42731631	14	2.9	14	77	0	55	14	0	36	48	1.44
42731776--42731814	15	2.5	16	84	16	55	61	0	2	35	1.10
42732498--42732540	17	2.4	19	84	7	63	32	44	2	20	1.65
42732885--42732939	6	9.2	6	100	0	110	32	0	16	50	1.45
42735111--42735278	20	8.6	20	70	13	118	47	6	4	41	1.50
42735122--42735312	57	3.3	56	86	4	247	46	6	4	42	1.50
42735352--42735458	37	3.1	35	75	22	118	45	11	2	40	1.54
42742347--42742570	104	2.2	104	93	1	378	17	19	31	31	1.95
42742489--42742640	71	2.1	72	92	1	252	23	17	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42746261--42746302	13	3.1	14	80	13	52	71	0	28	0	0.86
42749052--42749083	6	5.2	6	96	3	55	81	0	0	18	0.70
42749527--42749584	22	2.7	21	76	10	53	41	17	3	37	1.66
42749563--42749637	19	3.8	19	84	6	105	37	16	10	36	1.83
42752576--42752608	17	1.9	18	88	11	52	45	0	12	42	1.41
42765624--42765677	26	2.1	26	100	0	108	37	3	22	37	1.72
42765628--42765689	26	2.3	26	91	2	97	37	3	24	35	1.72
42767695--42767747	20	2.8	19	77	16	56	62	0	3	33	1.13
42767807--42767845	20	2.0	20	85	10	53	64	0	2	33	1.08
42768090--42768145	19	2.9	19	80	15	71	35	0	1	62	1.06
42768628--42768693	31	2.2	30	80	17	75	27	16	9	46	1.77
42769860--42769926	11	5.8	11	73	15	55	76	1	20	1	0.95
42769861--42769926	34	1.9	34	84	9	89	77	1	19	1	0.93
42769857--42769936	21	3.6	21	79	16	72	75	1	21	2	1.00
42769861--42769927	20	3.2	20	81	8	71	76	1	20	1	0.95
42772334--42772366	5	6.6	5	100	0	66	39	21	18	21	1.93
42773013--42773043	16	1.9	16	93	0	53	48	0	29	22	1.51
42773127--42773186	30	2.0	31	83	3	77	41	0	40	18	1.50
42774141--42774174	17	2.0	17	100	0	68	47	23	0	29	1.52
42775524--42775640	62	1.9	61	86	5	166	51	4	2	41	1.35
42778809--42778907	28	3.5	28	83	4	110	32	12	27	28	1.92
42784251--42784454	108	1.9	106	87	4	302	35	19	16	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42785287--42785341	3	18.3	3	84	0	74	63	1	1	32	1.15
42787107--42787786	87	7.8	87	89	0	1072	24	23	22	30	1.99
42789469--42789508	6	6.7	6	97	0	71	12	2	15	70	1.28
42793555--42793758	108	1.9	106	89	4	320	35	20	16	27	1.94
42794592--42794646	3	18.3	3	88	0	83	61	1	1	34	1.17
42802004--42802033	12	2.5	12	94	0	51	26	23	40	10	1.86
42811131--42811162	2	16.0	2	100	0	64	0	50	0	50	1.00
42815782--42815850	29	2.3	29	82	5	84	27	13	13	46	1.79
42816262--42816310	24	2.0	24	84	11	64	75	0	6	18	1.00
42822128--42822300	30	5.7	30	85	1	229	32	8	15	43	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204