genome.fa.s26.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  114  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35400812--35400933	40	3.1	39	85	4	158	34	19	22	23	1.97
35400794--35400939	40	3.6	41	79	8	156	32	20	22	23	1.98
35400984--35401143	41	3.9	41	82	2	178	24	23	23	28	2.00
35401622--35401687	14	4.7	14	75	0	51	25	0	37	36	1.57
35401634--35401674	21	2.0	21	85	0	55	26	0	41	31	1.56
35401798--35401829	7	4.6	7	96	0	55	25	0	31	43	1.55
35402793--35403106	147	2.1	149	88	2	456	41	14	12	31	1.84
35407623--35407936	43	7.3	43	89	0	430	22	17	31	28	1.97
35409633--35410041	202	2.0	202	92	1	687	43	3	14	38	1.63
35418907--35418937	2	15.5	2	93	0	53	0	51	0	48	1.00
35419449--35419493	22	2.0	22	91	0	72	33	2	15	48	1.57
35423219--35423263	22	2.0	22	86	0	63	33	4	15	46	1.66
35425411--35425486	9	8.4	9	84	11	102	26	9	22	42	1.83
35425411--35425486	27	2.8	27	93	0	134	26	9	22	42	1.83
35447576--35447624	14	3.0	17	80	14	50	46	0	6	46	1.27
35450139--35450180	19	2.4	17	82	17	59	33	0	14	52	1.42
35450140--35450184	17	2.5	19	86	10	60	35	0	13	51	1.41
35452208--35452253	25	1.9	23	82	8	56	52	2	4	41	1.33
35461635--35461681	24	2.0	24	87	8	69	10	12	14	61	1.56
35463578--35463684	45	2.4	45	82	3	144	42	18	17	21	1.90
35463884--35463970	40	2.2	40	85	0	111	41	19	8	31	1.80
35464752--35464778	5	5.4	5	100	0	54	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35466459--35466529	34	2.1	34	100	0	142	42	23	2	30	1.69
35470817--35470916	45	2.2	45	83	0	128	42	17	18	23	1.89
35471990--35472153	5	33.2	5	98	1	314	59	0	0	40	0.98
35474928--35474982	20	2.7	20	80	2	56	25	29	25	20	1.99
35474937--35474982	21	2.2	20	84	3	56	26	23	26	23	2.00
35475855--35475884	15	1.9	16	93	6	53	40	33	6	20	1.78
35488602--35488816	41	5.2	41	85	1	288	20	27	16	35	1.94
35488602--35488797	83	2.4	82	88	1	293	18	27	16	37	1.92
35489538--35489572	15	2.3	15	100	0	70	28	31	25	14	1.95
35492041--35492366	165	2.0	165	96	0	598	40	17	8	33	1.80
35493092--35493153	27	2.3	25	76	17	70	24	20	12	41	1.87
35495118--35495631	31	16.7	31	87	2	664	31	8	15	43	1.77
35495118--35495631	61	8.4	62	85	3	664	31	8	15	43	1.77
35495118--35495631	92	5.6	92	88	3	637	31	8	15	43	1.77
35497347--35497432	30	2.8	31	85	3	104	47	2	17	32	1.60
35504674--35504703	16	1.9	15	93	6	51	86	0	0	13	0.57
35505773--35506412	169	3.8	169	93	0	998	26	28	16	27	1.97
35506434--35506520	44	2.0	44	90	0	138	29	25	17	27	1.97
35509447--35509531	9	9.4	9	88	0	116	45	22	7	24	1.77
35509447--35509531	27	3.1	27	89	0	134	45	22	7	24	1.77
35509638--35509681	18	2.4	18	88	0	61	13	2	43	40	1.57
35523102--35523148	21	2.2	22	85	11	62	38	6	0	55	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35524855--35524959	52	2.0	52	81	0	120	46	6	11	35	1.66
35525519--35525549	15	2.0	16	93	6	55	61	0	0	38	0.96
35525586--35525618	15	2.2	15	94	0	57	57	0	0	42	0.98
35547784--35547835	13	3.7	13	76	18	59	17	26	34	21	1.95
35547778--35547845	30	2.3	30	100	0	136	20	30	29	19	1.97
35549080--35549127	21	2.3	21	77	0	51	43	20	25	10	1.83
35549081--35549237	42	3.8	42	81	1	118	44	19	21	14	1.86
35549087--35549155	21	3.3	21	79	0	75	40	21	24	13	1.89
35549094--35549250	83	1.9	83	85	0	215	44	18	21	15	1.86
35549098--35549255	42	3.8	42	81	5	167	44	18	20	15	1.86
35549144--35549257	21	5.5	21	64	10	63	47	17	17	17	1.83
35549448--35549535	45	1.9	46	83	2	115	45	12	1	40	1.49
35551225--35551251	13	2.1	13	100	0	54	22	0	0	77	0.76
35551636--35551674	17	2.2	18	86	4	53	48	12	2	35	1.55
35574649--35574717	30	2.3	30	92	0	120	17	31	28	21	1.96
35577416--35577508	40	2.3	40	81	1	105	26	26	21	24	1.99
35583861--35584049	50	3.8	50	87	0	279	25	22	30	21	1.99
35598119--35598295	39	4.5	39	88	0	246	42	20	6	29	1.77
35620443--35620490	10	4.8	10	78	0	60	66	2	4	27	1.21
35620443--35620497	20	2.7	19	78	10	56	67	1	5	25	1.22
35627639--35627693	20	2.7	19	83	10	74	10	32	12	43	1.78
35627656--35627836	20	9.1	20	69	5	98	14	24	16	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35627632--35627783	40	3.8	40	75	9	114	14	23	14	47	1.81
35627656--35627836	60	3.0	60	84	1	229	14	24	16	44	1.85
35627733--35627849	60	2.0	60	86	3	164	14	22	19	43	1.87
35630986--35631027	11	3.6	11	81	12	57	35	0	4	59	1.19
35631052--35631081	15	2.0	15	93	0	51	70	0	26	3	1.03
35634527--35634568	22	1.9	22	95	0	75	9	21	28	40	1.84
35634715--35634812	43	2.3	43	82	1	126	19	21	31	27	1.97
35634803--35634939	43	3.2	42	85	6	186	29	28	21	21	1.98
35634803--35634956	43	3.6	42	79	8	166	30	27	20	20	1.98
35634778--35634987	86	2.4	85	79	7	235	29	25	21	23	1.99
35634949--35635048	43	2.3	42	82	3	128	31	28	17	24	1.97
35634778--35635026	86	2.9	84	76	8	216	29	26	21	22	1.99
35635356--35635448	42	2.2	42	84	3	116	10	43	15	31	1.80
35635356--35635467	21	5.3	20	77	2	80	9	41	16	32	1.80
35635439--35635585	66	2.2	66	90	2	224	12	29	19	38	1.88
35641017--35641052	18	2.0	18	94	0	63	33	0	13	52	1.41
35641090--35641250	9	18.7	9	67	15	72	38	3	18	39	1.67
35641197--35641245	16	3.1	16	94	5	82	30	0	24	44	1.54
35641196--35641250	25	2.2	25	84	12	69	32	0	23	43	1.54
35641231--35641439	34	6.3	34	81	7	252	42	2	10	44	1.53
35641229--35641419	65	2.9	64	92	3	310	41	2	10	45	1.51
35641231--35641439	99	2.1	98	84	5	269	42	2	10	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35642318--35642362	18	2.4	19	88	3	65	35	40	4	20	1.72
35642912--35643622	114	6.3	114	85	4	924	31	24	21	22	1.98
35651782--35651831	25	2.0	25	84	7	66	46	0	0	54	1.00
35655806--35655856	22	2.5	20	84	9	66	29	21	3	45	1.70
35657015--35657050	17	2.0	18	89	10	56	0	27	0	72	0.85
35657104--35657156	22	2.5	22	87	9	74	18	3	5	71	1.21
35659822--35660018	98	2.0	98	91	0	322	42	10	24	22	1.85
35667464--35667511	24	2.0	24	100	0	96	41	20	20	16	1.90
35669438--35669534	29	3.3	29	74	5	106	31	18	19	29	1.96
35678500--35678527	3	9.3	3	100	0	56	64	0	0	35	0.94
35684940--35684969	16	1.9	15	93	6	51	56	0	26	16	1.40
35687211--35687268	27	2.2	26	78	6	62	24	8	10	56	1.60
35691027--35691057	6	5.2	6	100	0	62	48	0	35	16	1.46
35692039--35692073	16	2.2	16	89	0	52	48	0	0	51	1.00
35695002--35695091	26	3.3	27	76	14	96	57	4	1	36	1.26
35696036--35696072	19	1.9	19	94	0	65	83	0	2	13	0.74
35697026--35697142	43	2.7	43	82	4	137	29	20	19	30	1.97
35697022--35697142	44	2.8	45	82	3	149	28	20	19	31	1.97
35697175--35697364	50	3.8	50	69	5	152	23	24	23	28	1.99
35697149--35697356	99	2.1	100	90	2	321	24	22	22	30	1.99
35697559--35697716	44	3.7	44	88	4	207	28	25	17	27	1.98
35700053--35700112	25	2.4	25	83	8	68	61	1	15	21	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35704237--35704326	31	2.7	33	81	10	103	55	4	4	35	1.40
35704504--35704538	17	2.1	17	94	0	61	51	0	11	37	1.38
35704656--35704712	3	19.0	3	100	0	114	66	0	0	33	0.92
35709060--35709116	16	3.6	16	90	0	78	35	21	3	40	1.70
35708993--35709081	46	2.0	44	82	8	108	38	20	5	35	1.76
35713691--35713748	29	2.1	27	87	12	84	43	3	3	50	1.36
35714094--35714129	20	1.9	20	88	11	58	52	5	8	33	1.55
35716840--35716898	26	2.3	26	88	5	84	28	10	13	47	1.75
35717045--35717092	12	4.0	12	86	0	69	14	27	0	58	1.37
35717046--35717093	6	8.0	6	85	0	60	14	29	0	56	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204