genome.fa.s26.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  185  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54933497--54933555	31	1.9	31	82	6	75	47	0	0	52	1.00
54940445--54940500	28	2.0	28	82	3	67	48	1	3	46	1.30
54965488--54965525	17	2.2	18	85	4	51	2	13	2	81	0.90
54965659--54965694	13	2.8	13	86	0	54	63	16	13	5	1.47
54966780--54966843	31	2.1	31	85	5	85	40	1	1	56	1.18
54972238--54972286	22	2.2	21	79	10	53	48	2	6	42	1.39
54972360--54972403	19	2.4	18	88	3	61	52	0	0	47	1.00
54975832--54975946	60	1.9	59	87	1	167	35	6	16	40	1.75
54977244--54977296	23	2.3	23	90	6	81	41	20	9	28	1.83
54982423--54982537	51	2.3	51	95	0	203	27	29	0	42	1.56
54982460--54982541	22	3.4	22	67	20	56	28	24	0	47	1.52
54982539--54982604	32	2.1	32	97	2	125	33	0	0	66	0.92
54983498--54983522	7	3.6	7	100	0	50	28	0	12	60	1.32
54984174--54984208	18	1.9	18	88	0	52	25	34	8	31	1.86
54984610--54984794	71	2.6	71	94	0	325	37	3	14	45	1.61
54984815--54985187	29	12.6	29	88	6	550	42	27	0	28	1.61
54985236--54985260	10	2.5	10	100	0	50	44	8	0	48	1.32
54988355--54988706	124	2.8	124	94	0	623	33	21	15	29	1.95
54989970--54989994	3	8.3	3	100	0	50	32	0	0	68	0.90
54993553--54994099	183	3.0	183	94	0	932	35	15	25	24	1.94
54999185--54999239	21	2.7	20	86	8	74	25	7	36	30	1.83
54999351--54999406	18	3.1	18	72	23	55	55	3	1	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55001135--55001190	21	2.7	21	94	0	94	28	8	33	28	1.87
55004176--55004219	6	7.2	6	89	5	70	38	0	61	0	0.96
55009754--55009837	43	2.0	43	90	2	134	36	5	15	41	1.72
55012849--55012892	22	2.0	22	95	0	79	45	25	0	29	1.54
55016483--55016530	21	2.3	22	86	13	66	35	8	8	47	1.64
55021616--55021661	13	3.5	13	80	14	58	39	0	2	58	1.10
55023191--55023258	3	22.7	3	85	11	95	32	1	2	63	1.18
55023284--55023316	16	2.1	16	94	0	57	75	6	15	3	1.11
55034716--55034771	21	2.7	21	86	5	78	28	33	8	28	1.87
55068328--55068391	30	2.1	31	91	2	103	28	23	6	42	1.78
55068569--55068594	13	2.0	13	100	0	52	46	15	7	30	1.74
55072992--55073046	29	1.9	28	92	3	92	27	20	5	47	1.72
55075894--55076325	69	6.4	65	74	14	317	59	3	7	29	1.42
55075893--55076214	134	2.4	135	84	5	389	59	4	7	28	1.43
55075894--55076325	134	3.2	130	79	12	346	59	3	7	29	1.42
55076197--55076342	57	2.5	58	79	8	163	58	2	6	32	1.36
55078080--55078179	45	2.2	45	80	3	112	34	26	9	31	1.87
55078161--55078489	51	6.7	51	72	9	261	34	17	13	34	1.89
55078034--55078291	141	1.8	141	82	3	331	33	18	12	34	1.89
55078116--55078344	96	2.4	96	85	1	289	32	19	13	34	1.91
55078015--55078489	147	3.3	147	78	4	403	33	18	13	34	1.89
55078315--55078534	96	2.3	95	85	5	309	34	19	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55080562--55080634	19	3.8	19	92	0	128	38	9	15	36	1.80
55081218--55081272	16	3.4	17	78	12	53	34	5	5	54	1.46
55081203--55081373	48	3.4	48	69	18	141	36	6	4	53	1.46
55081263--55081314	20	2.8	18	78	13	61	38	7	0	53	1.30
55081266--55081311	20	2.3	20	84	0	65	36	8	0	54	1.32
55081203--55081409	98	2.1	100	90	1	328	34	7	3	53	1.48
55081364--55081401	20	1.9	20	88	0	58	31	13	0	55	1.38
55081253--55081407	52	3.2	48	74	17	174	34	9	3	52	1.51
55088250--55088787	132	4.1	132	90	2	816	28	17	24	30	1.97
55089019--55089131	19	5.8	19	91	6	183	37	12	15	34	1.86
55089020--55089131	59	1.9	59	94	3	199	37	12	15	34	1.85
55089019--55089131	40	2.9	40	92	5	180	37	12	15	34	1.86
55089729--55089771	16	2.5	17	81	7	52	34	6	4	53	1.49
55089785--55089874	44	2.0	43	81	12	103	34	8	2	54	1.44
55089829--55089866	20	1.9	20	88	0	58	31	13	0	55	1.38
55089903--55089942	20	2.0	20	95	4	73	32	0	0	67	0.91
55094936--55095002	28	2.3	29	84	7	91	37	8	16	37	1.80
55102230--55102258	15	1.9	15	100	0	58	13	0	34	51	1.42
55105583--55105630	25	1.9	25	95	0	87	37	31	14	16	1.89
55108421--55108458	20	2.0	20	84	5	51	71	0	15	13	1.16
55109544--55109599	22	2.6	22	77	2	60	41	0	0	58	0.98
55109544--55109606	32	2.0	30	81	6	72	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55111201--55111287	30	2.8	30	78	10	88	25	14	11	48	1.78
55115292--55115357	34	1.9	35	81	6	82	37	1	4	56	1.29
55118307--55118383	40	1.9	40	86	5	111	31	15	14	38	1.87
55124913--55124969	24	2.4	24	82	5	62	45	10	5	38	1.61
55124925--55124978	24	2.2	24	80	0	63	48	7	3	40	1.49
55128735--55128812	28	2.7	29	74	9	70	53	1	2	42	1.22
55128746--55128813	31	2.3	28	78	9	73	54	1	2	41	1.24
55129691--55129737	3	16.0	3	77	4	51	36	0	4	59	1.17
55129691--55129737	12	4.0	12	86	5	60	36	0	4	59	1.17
55130092--55130187	39	2.5	39	80	6	108	20	23	28	27	1.99
55131998--55132049	24	2.2	24	85	0	68	48	9	5	36	1.60
55134832--55134856	2	12.5	2	100	0	50	52	0	0	48	1.00
55141368--55141605	118	2.0	118	96	0	440	36	17	15	31	1.91
55141507--55141587	41	2.0	41	85	0	108	35	11	16	37	1.84
55145730--55145762	17	1.9	17	93	0	57	24	24	6	45	1.75
55150153--55150222	19	3.5	20	69	16	65	48	1	0	50	1.09
55163778--55163813	11	3.3	11	88	0	54	63	0	5	30	1.17
55177383--55177528	43	3.4	43	78	3	168	29	16	21	32	1.95
55180573--55180640	23	3.0	23	86	0	91	23	26	4	45	1.71
55185051--55185118	23	3.0	23	86	0	91	23	29	4	42	1.73
55187249--55187313	24	2.7	24	92	2	103	13	33	21	30	1.92
55187270--55187325	25	2.3	24	84	3	67	19	32	21	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55187450--55187494	21	2.1	22	91	4	74	37	4	20	37	1.73
55199776--55199814	18	2.2	18	85	0	51	12	23	2	61	1.43
55208882--55209044	79	2.1	79	97	0	308	36	15	10	36	1.82
55212735--55212789	18	3.2	18	76	19	55	30	0	1	67	1.01
55212859--55212892	17	1.9	18	94	5	61	70	2	0	26	1.01
55228031--55228086	18	2.9	20	84	10	80	32	8	1	57	1.40
55228031--55228092	20	3.2	19	86	9	81	32	8	1	58	1.37
55228216--55228271	30	1.9	30	85	3	78	30	10	3	55	1.51
55230189--55230232	19	2.3	20	84	7	56	27	20	11	40	1.86
55235080--55235216	43	3.2	43	66	17	111	27	25	24	23	2.00
55234935--55235582	87	7.4	87	90	0	1019	28	22	24	24	1.99
55237183--55237247	18	3.4	18	89	6	85	32	7	0	60	1.25
55237371--55237426	30	1.9	30	85	3	78	30	10	3	55	1.51
55245379--55245429	26	2.1	25	85	10	70	54	3	1	39	1.30
55249266--55249333	33	2.2	31	84	7	84	55	1	1	41	1.18
55262526--55262619	48	2.0	48	93	4	163	25	27	20	26	1.99
55263388--55263435	24	2.0	24	84	8	62	45	27	4	22	1.70
55267209--55267258	25	2.0	25	88	7	75	24	32	18	26	1.97
55269293--55269317	13	1.9	13	100	0	50	32	4	24	40	1.73
55271099--55271241	41	3.5	41	92	0	205	30	21	26	21	1.99
55271112--55271257	41	3.6	41	90	1	159	31	20	27	20	1.97
55271099--55271257	82	1.9	82	83	2	203	30	20	27	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55274578--55274627	25	2.0	25	88	0	73	24	30	20	26	1.98
55276463--55276515	22	2.4	22	93	0	88	9	22	22	45	1.81
55278521--55278565	11	3.9	11	77	11	54	31	4	4	60	1.37
55280140--55280327	26	7.5	26	72	14	135	20	19	19	40	1.92
55288433--55288461	14	2.0	15	93	6	51	68	0	0	31	0.89
55288500--55288562	31	2.0	31	96	0	117	44	9	11	34	1.73
55306204--55306467	132	2.0	132	97	0	501	34	13	15	35	1.87
55311348--55311418	31	2.3	31	100	0	142	70	0	8	21	1.13
55311348--55311418	6	11.5	6	76	5	52	70	0	8	21	1.13
55313453--55313493	18	2.2	18	87	12	57	65	9	2	21	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204