genome.fa.s26.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  138  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42152820--42152868	24	2.0	24	100	0	98	24	24	16	34	1.95
42163183--42163208	2	13.0	2	100	0	52	50	0	50	0	1.00
42169552--42169669	43	2.8	43	84	3	159	24	17	26	31	1.97
42171575--42171614	21	2.0	21	90	5	64	35	32	2	30	1.71
42172222--42172362	30	4.7	30	80	1	149	38	14	13	33	1.86
42172553--42172589	18	2.1	18	100	0	74	32	16	0	51	1.45
42180076--42180138	25	2.5	25	87	7	83	20	6	1	71	1.16
42180069--42180121	4	12.8	4	80	7	61	24	3	0	71	1.02
42180471--42180513	6	6.8	6	81	7	50	18	2	2	76	1.00
42187363--42187401	18	2.2	17	86	13	53	33	0	20	46	1.51
42187627--42187748	23	5.3	23	89	2	192	23	21	25	29	1.99
42189700--42189741	21	2.0	21	86	9	59	16	4	4	73	1.17
42189715--42189747	17	1.9	17	93	0	57	15	3	3	78	0.99
42190257--42190320	31	2.1	31	100	0	128	42	17	18	21	1.89
42192780--42192973	4	49.8	4	73	5	137	0	56	1	42	1.06
42192783--42192973	14	13.6	14	77	7	154	0	56	1	42	1.06
42192780--42192973	6	33.2	6	75	5	137	0	56	1	42	1.06
42196670--42196746	14	5.0	15	71	20	52	42	15	9	32	1.78
42196686--42196725	20	2.0	20	90	0	62	50	12	10	27	1.72
42196674--42196740	34	1.9	35	90	3	109	46	13	8	31	1.74
42196709--42196748	14	2.9	14	84	0	53	42	17	7	32	1.77
42198224--42198710	242	2.0	242	96	0	902	32	13	22	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42202234--42202304	33	2.2	33	100	0	142	45	25	2	26	1.67
42208031--42208260	114	2.0	114	95	1	417	32	12	23	31	1.92
42219087--42219279	98	2.0	95	87	3	278	29	16	21	33	1.95
42227098--42227146	20	2.3	23	79	13	59	32	8	2	57	1.40
42230704--42230742	21	1.9	20	89	5	60	56	0	0	43	0.99
42241477--42241501	12	2.1	12	100	0	50	48	0	0	52	1.00
42241555--42241688	58	2.2	60	80	8	141	43	2	5	49	1.37
42244081--42244133	16	3.3	16	76	10	54	50	0	3	45	1.19
42244084--42244123	21	2.0	20	85	5	53	50	0	2	47	1.14
42244072--42244201	68	1.9	68	87	3	190	51	3	3	40	1.38
42257714--42257756	21	2.1	20	82	4	50	48	0	4	46	1.22
42257716--42257834	38	3.3	38	67	20	110	46	1	6	45	1.39
42257702--42257905	69	3.0	67	90	5	318	48	2	5	43	1.41
42272595--42273429	271	3.1	272	98	0	1609	42	5	17	34	1.73
42273586--42273688	29	3.6	29	70	0	98	19	23	18	38	1.93
42273942--42273989	21	2.2	22	78	10	55	41	4	4	50	1.41
42278992--42279022	16	1.9	16	93	0	53	41	9	0	48	1.36
42280215--42280259	19	2.4	19	92	0	72	24	6	31	37	1.81
42286613--42286798	98	1.9	98	84	4	250	38	10	17	33	1.84
42297587--42297630	22	2.0	23	86	4	63	54	11	4	29	1.56
42300843--42300940	51	1.9	51	85	0	133	32	13	8	45	1.72
42308400--42308440	17	2.3	19	83	8	59	58	4	2	34	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42316664--42316691	10	2.8	10	100	0	56	17	60	10	10	1.57
42317285--42317309	7	3.6	7	100	0	50	64	0	36	0	0.94
42317441--42317799	50	7.2	50	83	5	336	28	25	16	30	1.96
42317441--42317857	51	8.3	49	80	6	378	28	25	16	29	1.97
42325071--42325459	51	7.7	50	79	7	378	29	25	15	29	1.96
42329022--42329046	13	1.9	13	100	0	50	28	8	40	24	1.83
42338033--42338097	25	2.5	25	82	7	76	40	21	21	16	1.92
42338054--42338126	25	2.9	25	85	0	92	35	20	23	20	1.96
42339818--42339882	28	2.4	28	82	10	80	41	6	9	43	1.61
42344851--42344899	25	2.0	25	83	0	62	38	0	16	44	1.48
42347349--42347376	14	2.0	14	100	0	56	28	0	0	71	0.86
42348400--42348500	19	4.7	22	83	11	106	38	15	7	37	1.77
42348438--42348500	19	3.3	19	90	0	108	38	15	7	38	1.77
42349019--42349515	44	11.4	44	72	13	282	26	22	21	29	1.99
42349089--42349532	217	2.0	218	89	1	669	25	23	20	29	1.99
42349881--42350088	44	4.7	44	88	4	260	30	25	16	26	1.97
42349881--42350088	88	2.4	89	87	4	298	30	25	16	26	1.97
42351331--42351368	10	3.8	10	86	10	51	0	21	0	78	0.74
42351340--42351376	11	3.4	11	92	7	58	0	18	0	81	0.70
42356613--42356690	19	3.8	19	88	8	102	38	17	8	34	1.82
42356590--42356676	19	3.9	24	70	18	71	40	18	6	34	1.77
42358086--42358165	29	2.6	30	86	5	99	31	10	15	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42358111--42358174	30	2.2	29	82	2	74	32	10	10	45	1.74
42361517--42361601	25	3.4	25	75	12	84	25	29	20	24	1.99
42364471--42364509	11	3.4	11	83	13	51	61	0	0	38	0.96
42364462--42364522	25	2.4	25	81	13	72	59	1	0	39	1.08
42364461--42364512	13	3.9	14	78	17	56	57	1	0	40	1.10
42365022--42365065	18	2.4	18	82	17	56	38	2	2	56	1.24
42365404--42365434	3	10.3	3	100	0	62	67	0	0	32	0.91
42367235--42367294	25	2.3	26	85	5	86	38	10	16	35	1.82
42367235--42367306	25	2.8	25	78	4	81	37	8	20	33	1.83
42372189--42372229	20	2.0	20	100	0	82	34	4	29	31	1.79
42373609--42373956	174	2.0	174	94	0	606	33	9	21	35	1.86
42374436--42374472	18	2.0	19	89	5	58	45	0	32	21	1.52
42378311--42378357	20	2.2	22	77	11	53	17	38	0	44	1.48
42385459--42385524	27	2.4	27	87	0	96	19	28	15	36	1.92
42387223--42387271	19	2.5	19	83	3	53	24	26	2	46	1.63
42388452--42388491	3	13.0	3	94	5	71	35	0	0	65	0.93
42390474--42390517	18	2.5	16	77	22	52	47	0	6	45	1.29
42394337--42394361	13	1.9	13	100	0	50	64	0	0	36	0.94
42394334--42394368	11	3.0	11	84	15	52	62	0	0	37	0.95
42394471--42394505	17	2.1	17	89	10	54	31	5	0	62	1.18
42394879--42394907	6	4.8	6	100	0	58	68	31	0	0	0.89
42413279--42413323	18	2.5	18	82	7	56	37	4	17	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42414397--42414434	3	12.7	3	100	0	76	34	0	0	65	0.93
42414433--42414459	3	9.0	3	100	0	54	33	33	0	33	1.58
42415068--42415113	20	2.2	21	88	7	76	36	17	32	13	1.88
42417463--42417544	38	2.1	39	82	6	96	47	6	4	41	1.50
42421924--42421977	21	2.4	23	77	17	60	7	9	16	66	1.42
42422798--42422834	19	1.9	20	94	5	67	48	2	8	40	1.47
42423656--42423702	24	2.0	24	84	16	62	34	0	14	51	1.43
42423861--42423976	37	2.9	40	72	10	112	29	15	20	34	1.94
42423862--42423995	40	3.4	40	72	14	116	27	15	23	32	1.95
42428239--42428353	27	4.3	27	85	2	151	43	20	19	16	1.88
42428740--42428806	28	2.4	28	89	0	107	23	26	23	25	2.00
42431208--42431361	41	3.8	41	93	0	254	31	29	20	18	1.96
42431468--42431593	47	2.7	47	83	0	171	39	15	6	38	1.72
42431676--42431854	91	2.0	91	97	0	340	34	20	3	41	1.70
42435109--42435147	20	2.0	20	100	0	78	46	0	20	33	1.51
42436290--42436325	17	2.1	17	94	0	63	44	19	11	25	1.83
42443460--42443503	15	2.8	16	79	6	63	36	0	0	63	0.95
42445219--42445272	20	2.6	21	82	11	67	64	0	7	27	1.20
42462552--42462591	21	2.0	20	90	5	62	50	0	5	45	1.23
42463506--42463540	18	1.9	18	88	0	52	80	2	5	11	1.00
42490037--42490069	16	1.9	18	88	11	52	51	15	0	33	1.43
42497099--42497123	13	1.9	13	100	0	50	24	16	12	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42497937--42498000	22	2.9	22	92	2	83	46	6	4	42	1.49
42497950--42498000	22	2.3	22	100	0	102	45	3	5	45	1.46
42498335--42498577	50	4.8	50	88	0	360	21	30	22	25	1.99
42498912--42498971	30	2.0	30	87	3	86	28	23	5	43	1.74
42500178--42500209	16	2.0	16	100	0	64	18	18	18	43	1.88
42504233--42504421	50	3.8	50	89	0	288	20	30	23	25	1.98
42504763--42504820	30	1.9	30	86	6	82	27	24	6	41	1.80
42509438--42509463	13	2.0	13	100	0	52	46	0	7	46	1.31
42511226--42511452	42	5.5	42	83	2	246	29	18	23	28	1.98
42514963--42514991	15	1.9	15	100	0	58	37	13	6	41	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204