genome.fa.s26.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  106  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32932728--32932762	18	1.9	18	100	0	70	22	11	11	54	1.68
32932886--32933196	17	17.4	18	72	14	209	32	14	9	43	1.78
32932886--32933018	52	2.5	52	82	12	139	34	14	9	42	1.77
32932987--32933086	53	1.9	52	85	2	137	30	15	10	45	1.78
32933020--32933198	74	2.5	72	81	8	202	31	14	10	44	1.78
32932878--32933196	36	8.9	35	74	13	197	31	14	10	43	1.79
32933220--32933280	17	3.4	17	74	24	54	40	6	8	44	1.60
32933222--32933357	37	3.6	38	77	14	131	38	8	10	42	1.69
32933245--32933392	36	4.1	34	75	14	111	37	9	10	42	1.71
32933302--32933358	16	3.4	16	73	19	53	33	10	10	45	1.73
32944349--32944396	1	48.0	1	78	0	51	89	8	2	0	0.56
32944346--32944389	9	5.2	9	84	15	67	88	11	0	0	0.51
32944346--32944389	17	2.6	17	96	3	81	88	11	0	0	0.51
32944346--32944396	17	3.1	16	88	8	75	88	9	1	0	0.60
32944350--32944388	8	4.9	8	87	12	62	89	10	0	0	0.48
32945241--32946069	78	10.8	76	83	8	945	27	16	21	35	1.94
32946330--32946357	5	5.6	5	100	0	56	21	0	0	78	0.75
32946549--32946714	30	5.6	30	70	9	99	31	22	7	38	1.81
32946638--32946718	29	2.8	29	81	5	92	37	22	6	34	1.79
32947029--32947080	25	2.1	25	82	7	61	71	17	9	1	1.22
32947025--32947077	18	2.9	18	82	0	61	67	18	11	1	1.30
32947206--32947239	13	2.7	12	86	13	50	73	0	26	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32947670--32947715	10	4.3	10	81	13	56	10	2	4	82	0.89
32947982--32948301	17	17.8	17	68	18	150	32	13	10	43	1.78
32947982--32948301	18	17.8	18	68	16	159	32	13	10	43	1.78
32947982--32948460	17	25.7	19	68	18	98	33	12	10	43	1.76
32948182--32948316	37	3.6	37	75	8	132	31	13	11	43	1.79
32948340--32948461	37	3.3	38	78	14	121	38	8	10	42	1.69
32948391--32948495	35	2.9	36	83	9	126	35	9	9	45	1.69
32950686--32950713	10	2.8	10	100	0	56	82	0	0	17	0.68
32950685--32950717	10	3.1	11	86	8	50	78	0	0	21	0.75
32951489--32951545	30	1.9	30	96	0	105	15	45	26	12	1.82
32951504--32951551	19	2.6	18	80	6	51	14	45	27	12	1.81
32961549--32961594	3	15.7	3	95	4	85	34	0	0	65	0.93
32963152--32963233	9	9.1	9	95	0	137	21	10	30	36	1.88
32963351--32963375	12	2.1	12	100	0	50	16	24	36	24	1.94
32978890--32978992	46	2.3	46	83	5	120	10	33	31	24	1.89
32978982--32979050	29	2.4	29	100	0	138	17	40	30	11	1.85
32982666--32982702	6	6.2	6	100	0	74	83	0	0	16	0.64
32982990--32983030	7	5.7	7	91	2	64	19	0	39	41	1.52
32982983--32983029	21	2.2	21	85	7	60	21	2	34	42	1.65
32982990--32983030	21	1.9	22	95	5	75	19	0	39	41	1.52
32983563--32983758	99	2.0	99	92	0	329	23	23	11	40	1.88
32988897--32988938	14	3.2	13	78	15	50	54	2	0	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32988898--32988955	28	2.1	27	84	15	75	53	1	0	44	1.10
32988914--32988955	14	3.0	14	86	6	59	54	0	0	45	0.99
33006060--33006091	14	2.3	14	100	0	64	50	0	31	18	1.48
33015854--33015915	21	2.9	21	73	4	52	61	3	4	30	1.33
33018449--33018489	20	2.1	20	86	4	57	14	34	31	19	1.92
33021484--33021588	42	2.5	43	90	3	176	36	21	20	20	1.96
33021508--33021738	42	5.5	42	81	2	176	30	19	21	28	1.98
33021624--33021738	43	2.7	43	81	5	135	27	19	22	30	1.98
33022188--33022240	21	2.5	21	87	0	70	5	41	15	37	1.70
33027640--33028362	9	82.8	9	70	16	307	30	2	18	48	1.63
33027700--33027772	16	5.0	16	75	21	79	28	5	17	47	1.70
33027640--33028272	25	25.2	25	73	11	296	30	2	18	48	1.61
33027730--33027798	16	4.8	16	71	23	62	33	4	17	44	1.68
33027705--33027797	41	2.3	41	100	0	186	31	4	18	46	1.68
33027640--33028362	34	20.7	35	69	16	314	30	2	18	48	1.63
33027865--33027937	37	2.0	37	97	0	137	31	2	15	50	1.58
33027670--33028112	83	5.2	83	76	11	358	29	3	19	47	1.65
33028049--33028362	16	18.8	17	68	18	94	30	2	17	49	1.60
33028181--33028255	12	6.3	12	81	9	91	34	1	13	50	1.50
33028236--33028276	17	2.5	17	88	7	59	31	0	9	58	1.31
33030391--33030693	147	2.1	147	92	0	507	39	20	16	23	1.92
33030408--33030638	73	3.2	73	67	15	204	40	19	16	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33030436--33030660	75	3.0	75	67	15	205	40	19	16	23	1.91
33030460--33030693	75	3.2	75	68	15	214	39	19	16	24	1.92
33030813--33031051	115	2.1	115	91	0	379	32	21	18	27	1.96
33031747--33031991	50	4.8	50	78	10	212	22	28	20	28	1.98
33039300--33039595	50	5.8	51	82	4	273	21	27	22	28	1.99
33041211--33041268	23	2.4	24	81	18	68	41	25	12	20	1.87
33042936--33042966	14	2.2	14	94	0	53	9	9	0	80	0.90
33057294--33057647	44	8.2	43	70	14	214	30	21	20	27	1.98
33057341--33057665	85	3.8	85	70	13	234	30	20	21	28	1.98
33057292--33057677	129	3.0	129	87	3	557	30	21	20	27	1.98
33057861--33057994	44	3.0	44	86	5	180	29	17	21	32	1.96
33057875--33058011	44	3.1	44	81	8	129	28	16	21	33	1.95
33058552--33058595	15	3.2	15	69	24	51	43	36	2	18	1.63
33070992--33071025	17	2.1	17	94	5	61	29	38	11	20	1.88
33071929--33072114	40	4.7	40	83	3	225	40	27	18	13	1.88
33071926--33072114	79	2.4	79	90	0	297	40	27	18	13	1.88
33072093--33072134	21	2.0	21	90	0	66	38	19	26	16	1.92
33081972--33081997	10	2.6	10	100	0	52	23	0	42	34	1.54
33094170--33094217	21	2.2	22	78	10	55	41	2	14	41	1.57
33105493--33105659	83	2.0	83	98	0	325	25	11	17	45	1.82
33109977--33110036	20	3.0	20	83	9	70	41	1	3	53	1.27
33109984--33110047	19	3.4	18	80	8	58	39	1	3	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33110806--33110837	3	10.7	3	100	0	64	31	0	0	68	0.90
33111549--33111611	27	2.3	27	78	10	67	69	3	7	19	1.27
33112215--33112484	148	1.8	147	85	2	380	44	10	4	40	1.59
33113306--33113820	42	12.3	42	86	0	688	37	24	17	20	1.93
33122335--33122377	19	2.4	17	78	21	52	46	18	0	34	1.50
33124694--33124735	21	2.0	21	90	0	66	45	2	16	35	1.61
33128154--33128215	31	2.0	31	84	3	81	54	8	3	33	1.46
33128101--33128433	148	2.3	148	85	5	428	42	9	4	42	1.58
33147144--33147190	2	23.5	2	100	0	94	0	51	0	48	1.00
33153408--33153508	14	7.1	14	71	17	57	33	17	0	47	1.55
33153436--33153509	7	10.6	7	76	16	73	32	14	1	51	1.51
33153475--33153515	21	2.0	20	85	4	55	29	19	2	48	1.61
33156881--33157067	41	4.6	41	89	0	266	30	22	20	25	1.99
33170017--33170063	17	2.5	19	76	13	53	29	4	6	59	1.41
33170938--33171699	379	2.0	379	97	0	1436	21	15	27	35	1.94
33179379--33179631	27	9.4	27	79	2	249	43	19	16	20	1.88
33179379--33179631	54	4.7	54	79	4	278	43	19	16	20	1.88
33179375--33179630	81	3.2	80	78	4	291	44	18	16	20	1.87
33180383--33180429	24	1.9	24	86	4	67	36	0	38	25	1.56
33180638--33180998	27	13.4	27	81	3	368	42	20	17	18	1.89
33182468--33182679	54	3.7	54	72	17	176	41	20	18	18	1.90
33182468--33182590	27	4.6	27	87	0	165	41	19	19	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33182523--33182653	68	2.0	66	90	3	208	41	20	19	18	1.91
33182603--33182679	25	3.0	26	88	5	111	44	22	15	18	1.87
33182500--33182678	93	1.9	95	86	2	254	41	20	18	18	1.90
33185949--33186052	33	3.3	32	80	5	104	46	0	3	49	1.26
33197951--33198150	45	4.5	45	79	9	167	36	26	14	23	1.92
33205429--33205463	18	1.9	18	88	0	52	51	5	34	8	1.56
33209259--33209324	32	2.0	33	88	2	98	40	4	21	33	1.73
33210774--33210913	75	1.9	74	83	7	185	35	23	18	22	1.95
33211136--33211185	24	2.1	24	92	0	82	40	12	16	32	1.84
33211911--33211977	9	7.4	9	85	6	73	25	7	20	46	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204