genome.fa.s26.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  76  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22864139--22864376	34	7.2	33	81	5	259	33	9	13	44	1.75
22866381--22866572	41	4.7	41	87	2	278	31	17	23	26	1.97
22866546--22866595	26	1.9	26	95	0	91	18	16	34	32	1.92
22866572--22866691	42	2.9	41	83	6	150	21	17	25	35	1.95
22889292--22889482	93	2.1	93	92	2	321	41	17	13	27	1.87
22891717--22891933	40	5.6	39	76	14	200	25	21	26	26	1.99
22891772--22891940	37	4.4	40	79	12	133	26	19	27	27	1.99
22898808--22899032	119	1.9	120	83	8	298	25	22	27	24	2.00
22898808--22899032	40	5.7	40	87	5	280	25	22	27	24	2.00
22898815--22899065	79	3.2	79	81	10	271	27	21	26	25	1.99
22904431--22904455	4	6.2	4	100	0	50	52	0	0	48	1.00
22911627--22911827	43	4.7	43	83	2	260	37	21	16	23	1.94
22911627--22911827	86	2.3	86	87	1	287	37	21	16	23	1.94
22920679--22920731	25	2.2	25	86	3	72	0	20	0	79	0.74
22920694--22920730	10	3.6	10	96	3	65	0	21	0	78	0.75
22920682--22920733	15	3.4	15	86	2	68	0	23	0	76	0.78
22920708--22920751	18	2.6	16	85	10	52	2	20	2	75	1.03
22922847--22922901	29	1.9	29	85	3	76	21	5	12	60	1.53
22923757--22923795	19	2.1	19	85	0	51	51	10	0	38	1.36
22940328--22940373	20	2.3	20	88	0	65	17	26	2	54	1.54
22940344--22940374	16	1.9	16	93	0	53	19	22	6	51	1.69
22940631--22940822	50	3.8	50	84	5	244	23	28	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22942485--22942549	32	2.1	32	97	2	123	30	9	12	47	1.72
22943111--22943140	12	2.5	12	94	0	51	80	16	3	0	0.85
22943119--22943152	13	2.6	13	90	0	50	79	11	5	2	1.02
22948666--22948730	32	2.1	32	97	2	123	30	9	12	47	1.72
22949676--22949716	19	2.2	19	86	0	55	46	12	4	36	1.63
22956928--22956962	19	1.9	18	88	11	54	22	2	5	68	1.24
22957743--22957778	17	2.1	18	89	5	56	55	0	5	38	1.23
22958457--22958502	14	3.4	14	78	3	58	65	0	0	34	0.93
22959888--22959934	22	2.1	22	84	7	60	27	8	8	55	1.59
22960222--22960246	5	5.0	5	100	0	50	60	0	0	40	0.97
22960407--22960464	10	5.5	11	78	21	54	0	18	0	81	0.70
22960407--22960469	19	3.0	21	80	19	87	0	17	0	82	0.67
22960407--22960469	20	3.1	20	80	11	83	0	17	0	82	0.67
22960572--22960621	16	3.0	16	85	5	64	0	14	10	76	1.03
22960717--22960780	16	3.9	16	81	4	65	0	20	0	79	0.73
22960724--22960777	10	5.9	9	82	10	56	0	20	0	79	0.73
22960721--22960785	3	21.3	3	80	9	60	0	23	0	76	0.78
22960717--22960785	9	7.7	9	82	10	79	0	21	0	78	0.76
22961136--22961301	29	5.6	30	84	2	194	46	6	16	30	1.71
22961136--22961300	59	2.8	58	81	4	188	46	6	16	30	1.71
22961464--22965379	78	50.8	79	75	13	3027	36	20	15	27	1.93
22963143--22963513	68	4.8	80	75	10	232	35	20	16	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22965937--22965967	16	1.9	16	93	0	53	0	3	6	90	0.55
22969974--22970009	14	2.6	14	83	16	56	44	11	5	38	1.63
22970674--22970750	40	1.9	40	82	10	95	33	24	18	23	1.96
22975866--22975909	17	2.5	17	85	3	61	2	11	9	77	1.08
22976004--22976051	13	3.8	12	86	10	60	0	14	0	85	0.60
22976004--22976045	13	3.2	13	93	3	66	0	11	0	88	0.53
22976004--22976044	21	2.0	21	90	9	66	0	12	0	87	0.53
22976004--22976057	22	2.4	23	87	3	74	0	16	0	83	0.65
22976008--22976072	3	21.3	3	80	9	51	0	23	0	76	0.78
22976004--22976072	9	7.7	9	82	10	61	0	21	0	78	0.76
22976046--22976071	13	2.0	13	100	0	52	0	38	0	61	0.96
22976138--22976176	16	2.8	13	79	20	51	0	41	0	58	0.98
22976138--22976178	15	2.8	15	86	13	59	0	39	0	60	0.96
22976435--22976593	29	5.4	29	82	5	162	45	5	17	31	1.72
22979504--22980099	83	7.3	83	76	11	332	42	11	15	30	1.82
22979907--22980062	74	2.1	74	91	1	249	41	11	16	30	1.83
22979820--22980121	160	1.9	161	85	0	417	42	11	14	32	1.81
22980248--22980291	22	2.0	23	86	4	63	65	2	0	31	1.05
22980250--22980320	30	2.4	31	81	11	87	59	1	1	38	1.15
22980721--22980761	20	2.0	20	85	0	55	51	4	9	34	1.56
22982356--22982392	16	2.2	17	90	4	58	45	0	2	51	1.15
22983985--22984043	23	2.4	27	81	13	74	30	22	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22983985--22984050	23	2.7	25	75	15	66	31	21	25	21	1.98
22985775--22985843	31	2.4	28	85	7	84	24	14	14	46	1.82
22987019--22987053	14	2.4	14	90	4	52	54	34	0	11	1.37
22990273--22990310	19	2.1	19	85	5	51	36	0	13	50	1.42
23003121--23003276	43	3.6	43	80	3	136	34	24	16	24	1.95
23003276--23003309	17	2.0	17	100	0	68	41	23	11	23	1.87
23009047--23009084	11	3.4	11	96	3	67	57	0	2	39	1.12
23009248--23009288	18	2.3	18	91	0	64	2	36	53	7	1.42
23009256--23009295	18	2.2	18	86	0	53	2	45	50	2	1.28
23010782--23010979	108	1.8	108	89	2	308	38	16	21	23	1.93
23020503--23020722	30	7.4	30	75	10	87	42	12	24	20	1.86
23020531--23020722	30	6.5	30	77	8	196	43	11	24	19	1.85
23020566--23020722	29	5.3	29	81	9	183	42	12	26	19	1.86
23020531--23020722	89	2.2	89	86	3	280	43	11	24	19	1.85
23022384--23022442	11	5.8	10	74	22	52	38	5	0	55	1.22
23022466--23022569	32	3.4	32	74	17	130	42	2	1	52	1.27
23022454--23022567	59	1.9	59	96	0	210	42	2	1	52	1.25
23026351--23026394	22	2.0	23	81	4	54	40	9	9	40	1.68
23035178--23035245	32	2.1	32	100	0	136	35	17	20	26	1.95
23037304--23037357	15	3.7	15	82	5	74	74	0	0	25	0.83
23037307--23037355	14	3.4	14	82	2	62	77	0	0	22	0.77
23040655--23040746	41	2.3	41	80	1	96	35	16	22	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23040673--23040760	41	2.2	40	85	6	115	36	20	20	22	1.95
23043060--23043119	3	20.0	3	72	6	50	60	5	3	31	1.35
23043060--23043110	15	3.4	15	78	5	59	58	5	1	33	1.33
23049053--23049102	21	2.4	21	82	0	64	40	14	42	4	1.64
23049348--23049380	11	3.2	11	87	12	52	39	6	9	45	1.61
23056322--23056380	20	3.0	20	76	14	68	50	3	3	42	1.35
23056325--23056419	37	2.5	38	85	11	117	52	3	2	42	1.29
23056708--23056739	12	2.7	12	95	0	55	0	18	37	43	1.51
23062582--23062614	16	2.1	16	88	5	50	63	12	0	24	1.28
23063944--23063992	26	1.9	24	84	12	62	67	0	22	10	1.20
23069827--23069862	18	2.1	17	89	5	54	47	0	0	52	1.00
23069901--23070013	12	9.8	12	69	20	55	53	2	2	41	1.29
23069903--23069996	17	5.5	18	73	20	78	52	2	3	42	1.29
23070141--23070188	25	1.9	25	86	0	69	25	25	27	22	2.00
23073539--23073622	1	84.0	1	68	0	51	84	0	0	15	0.62
23073541--23073622	6	13.7	6	100	0	164	84	0	0	15	0.63
23082114--23082171	19	2.7	22	84	10	68	36	8	17	37	1.80
23093757--23093804	12	4.0	11	81	10	51	29	0	6	64	1.18
23094328--23094367	20	2.0	20	90	9	64	32	15	10	42	1.79
23096959--23097050	28	3.3	28	82	7	107	32	22	22	21	1.98
23097960--23097989	12	2.4	13	94	5	53	60	0	40	0	0.97
23105557--23105671	41	2.8	41	78	10	126	31	26	25	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23106875--23106924	23	2.2	23	82	7	57	56	10	0	34	1.33
23107336--23107460	66	2.0	62	87	6	178	29	4	20	45	1.71
23107337--23107471	62	2.1	65	84	5	177	31	5	17	45	1.71
23107505--23107583	26	3.0	27	78	7	83	30	10	17	41	1.83
23110468--23110546	37	2.1	37	88	4	115	25	30	18	25	1.98
23110665--23110973	47	6.6	47	92	0	492	27	30	9	32	1.88
23111202--23111381	40	4.6	40	81	10	192	23	27	23	25	2.00
23111202--23111381	79	2.3	80	81	8	208	23	27	23	25	2.00
23115870--23115919	19	2.6	19	83	3	64	54	6	4	36	1.44
23117836--23117904	29	2.3	29	75	7	68	23	15	18	42	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204