genome.fa.s26.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  58  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16955193--16955377	79	2.3	81	84	7	236	24	22	27	25	2.00
16955194--16955377	40	4.6	40	83	9	216	24	22	27	25	2.00
16955246--16955410	79	2.1	79	84	6	210	26	21	27	25	1.99
16962722--16962770	25	2.0	24	92	4	80	34	8	18	38	1.80
16970986--16971027	20	2.1	20	100	0	84	42	26	9	21	1.83
16974964--16975002	20	1.9	21	89	5	62	46	0	5	48	1.24
16985401--16985466	28	2.3	30	84	10	100	33	3	21	42	1.68
16988287--16988670	54	7.1	54	84	5	456	42	19	19	18	1.90
16988287--16988671	27	14.3	27	82	5	388	42	19	19	18	1.90
16988669--16988720	27	2.0	26	85	11	70	32	19	21	26	1.97
16988851--16988931	26	3.1	26	85	3	110	17	23	27	32	1.97
16989680--16989877	53	3.7	53	85	2	227	42	15	17	24	1.87
16989680--16989877	107	1.9	106	80	3	236	42	15	17	24	1.87
16993901--16993941	17	2.4	17	80	15	57	24	0	2	73	0.96
17006685--17006731	19	2.5	19	82	3	51	8	12	0	78	0.95
17011215--17011305	47	2.0	45	89	8	139	45	18	23	13	1.84
17012785--17013201	89	4.7	89	91	0	665	29	18	24	26	1.98
17012785--17013183	44	9.0	44	76	2	404	30	18	24	26	1.98
17012785--17013316	177	3.0	177	84	1	521	30	18	24	27	1.98
17014194--17014239	19	2.5	19	82	6	51	8	13	0	78	0.97
17015012--17015106	3	31.7	3	87	4	111	33	1	6	58	1.30
17017089--17017131	22	2.0	22	90	0	68	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17017097--17017307	103	2.1	101	96	1	386	39	3	7	49	1.48
17017140--17017352	103	2.1	101	81	7	241	43	4	8	44	1.54
17020017--17020053	10	3.9	9	89	10	56	56	21	0	21	1.42
17020017--17020053	19	1.9	19	94	0	65	56	21	0	21	1.42
17020156--17020248	19	5.1	19	69	17	70	46	12	9	31	1.75
17020146--17020271	54	2.3	54	90	0	207	42	15	9	32	1.79
17031990--17032044	28	2.0	28	85	7	76	50	0	1	47	1.11
17032748--17032773	9	2.9	9	100	0	52	57	0	0	42	0.98
17034504--17034549	8	6.2	8	85	14	64	23	0	0	76	0.79
17034503--17034550	14	3.4	14	83	13	62	27	0	0	72	0.84
17043373--17043411	18	2.2	18	86	9	53	25	17	2	53	1.56
17044919--17044976	19	2.7	22	84	10	68	36	8	17	37	1.80
17044945--17044990	21	2.1	22	84	8	58	36	4	15	43	1.66
17044932--17044990	22	2.7	23	79	7	61	37	5	16	40	1.71
17051921--17052001	24	3.4	24	91	6	128	34	11	23	30	1.90
17052285--17052930	45	14.5	45	77	7	432	30	19	23	26	1.98
17052277--17052943	134	5.0	133	78	7	627	31	19	23	26	1.98
17052280--17053078	178	4.4	177	81	6	756	30	19	23	26	1.98
17052272--17052933	223	3.0	221	83	5	757	31	19	23	26	1.98
17052864--17053131	143	1.9	143	85	1	376	29	19	23	27	1.98
17053079--17053182	51	2.0	51	88	0	154	31	17	22	28	1.96
17052936--17053297	194	1.9	195	86	2	523	29	20	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17053243--17053655	45	9.3	45	67	6	203	28	23	22	26	1.99
17053231--17053740	89	5.7	89	86	0	615	29	22	22	26	1.99
17053490--17053628	44	3.1	44	70	10	138	29	25	23	21	1.99
17053231--17053740	267	1.9	267	84	1	691	29	22	22	26	1.99
17053230--17053802	178	3.2	175	83	2	651	29	22	22	26	1.99
17053236--17053802	89	6.4	89	84	2	492	29	22	22	26	1.99
17053236--17053797	267	2.1	267	83	2	680	29	22	21	26	1.99
17054499--17054543	23	2.0	23	86	4	65	37	6	17	37	1.76
17057322--17057369	17	2.7	17	80	6	51	56	4	0	39	1.19
17057328--17057397	27	2.5	27	81	9	70	61	1	2	34	1.20
17057643--17057740	44	2.2	44	90	1	151	39	9	18	32	1.82
17066760--17066936	50	3.4	50	85	4	201	20	26	23	29	1.99
17070654--17070717	25	2.6	25	74	0	65	73	3	3	20	1.11
17072586--17072826	50	4.8	50	82	2	236	23	28	21	26	1.99
17079393--17079613	50	4.4	50	87	1	300	21	30	21	26	1.99
17079323--17079602	150	1.9	147	81	6	339	23	28	20	27	1.99
17088628--17088684	30	1.9	29	82	10	71	33	10	12	43	1.76
17089360--17089663	126	2.4	126	86	2	396	36	18	17	26	1.93
17089731--17089796	25	2.6	25	90	4	98	51	1	22	24	1.57
17102679--17102729	21	2.5	20	84	12	61	31	3	0	64	1.11
17102674--17102737	29	2.2	29	81	13	78	29	4	0	65	1.13
17105409--17105439	12	2.6	12	100	0	62	41	16	25	16	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17107743--17107795	20	2.7	21	75	16	60	79	0	18	1	0.83
17108076--17108262	97	2.0	93	91	4	302	26	16	9	47	1.77
17109143--17109761	44	14.2	44	67	13	283	29	19	24	26	1.99
17109140--17109845	131	5.4	131	88	2	995	29	19	24	26	1.98
17109187--17109544	87	4.1	87	67	10	217	29	20	23	25	1.99
17109797--17109961	88	1.9	88	89	0	249	24	19	26	29	1.98
17109980--17110313	182	1.8	182	86	3	483	31	19	20	28	1.97
17111744--17111783	17	2.3	18	86	4	55	32	2	0	65	1.06
17111743--17111812	21	3.3	21	76	6	61	30	4	4	61	1.34
17123796--17123832	19	1.9	19	88	0	56	13	18	13	54	1.71
17125997--17126107	11	9.7	11	67	7	60	66	6	1	25	1.25
17126074--17126116	22	2.0	22	85	0	59	67	11	4	16	1.38
17126462--17126496	18	1.9	18	88	0	52	40	2	2	54	1.30
17128673--17128705	17	1.9	17	93	0	57	30	24	12	33	1.91
17135584--17135612	15	1.9	15	100	0	58	20	17	20	41	1.90
17143475--17143520	17	2.6	18	73	13	51	41	2	4	52	1.33
17158657--17158696	20	2.0	20	85	9	55	62	0	5	32	1.17
17161032--17161093	20	3.1	20	77	9	63	33	9	11	45	1.73
17165320--17165362	22	2.0	21	81	4	50	39	16	0	44	1.48
17170937--17171151	89	2.4	94	78	6	237	44	14	13	27	1.82
17199170--17199212	21	2.0	22	95	4	79	13	2	13	69	1.28
17208405--17208472	30	2.2	31	84	2	84	48	7	17	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17212388--17212638	101	2.5	101	85	3	312	30	16	24	27	1.97
17212414--17212593	33	5.4	33	70	8	114	31	16	24	28	1.96
17214194--17214371	27	6.6	27	84	3	205	29	28	15	26	1.96
17214215--17214370	82	1.9	81	88	3	233	29	28	15	26	1.96
17216368--17216402	17	2.0	18	88	5	54	40	0	0	60	0.97
17218181--17218296	43	2.7	43	86	5	171	32	12	27	26	1.93
17240238--17240276	19	2.1	19	86	13	55	35	20	20	23	1.96
17244224--17244293	26	2.7	26	79	0	86	45	18	11	24	1.82
17253988--17254021	16	2.1	16	88	5	50	61	5	5	26	1.42
17254270--17254322	3	17.7	3	88	0	79	66	0	3	30	1.10
17255718--17255972	44	5.8	44	82	2	307	26	25	20	27	1.99
17255718--17255968	88	2.9	88	85	0	342	25	25	20	27	1.99
17268534--17268586	3	17.7	3	88	0	79	64	1	3	30	1.22
17277272--17277414	50	2.8	50	82	1	187	26	23	29	20	1.99
17288802--17288861	24	2.4	25	76	15	70	58	1	0	40	1.08
17288802--17288864	25	2.5	24	76	16	65	58	1	0	39	1.07
17309583--17309609	14	1.9	14	100	0	54	70	7	0	22	1.12
17316436--17316693	75	3.5	75	75	5	245	27	18	15	38	1.91
17316636--17317355	105	6.9	105	80	3	709	30	18	15	34	1.92
17319515--17319707	51	3.8	51	85	4	221	26	17	26	29	1.98
17323523--17323563	20	2.0	20	100	0	82	19	24	19	36	1.95
17338168--17338221	28	1.9	28	81	7	65	66	0	11	22	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17344321--17344379	26	2.3	26	81	0	82	44	23	10	22	1.83
17355749--17355833	3	28.3	3	85	0	107	32	5	2	58	1.35
17362180--17362242	16	3.5	17	81	14	58	77	0	19	3	0.90
17362179--17362244	27	2.5	26	81	18	75	77	0	19	3	0.90
17362179--17362235	21	2.7	21	81	15	64	78	0	17	3	0.88
17362204--17362242	16	2.4	17	91	4	62	79	0	20	0	0.73
17363578--17364366	89	8.9	89	83	1	835	28	24	22	24	1.99
17364553--17364760	51	4.2	51	74	6	174	29	18	24	27	1.98
17364586--17364763	97	1.8	97	86	0	257	31	17	23	27	1.97
17366382--17366418	3	12.3	3	100	0	74	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204