genome.fa.s26.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  41  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11946911--11946957	5	9.4	5	80	0	58	34	25	4	36	1.76
11952609--11952655	21	2.2	21	88	3	67	51	0	0	48	1.00
11965703--11965748	23	1.9	25	86	8	69	36	0	4	58	1.18
11966633--11966722	35	2.6	35	82	7	103	38	14	20	26	1.91
11975871--11976064	98	2.0	97	96	1	361	45	20	12	21	1.84
11979875--11979913	16	2.4	17	87	12	55	28	5	5	61	1.39
11982201--11982233	16	2.0	17	88	5	50	57	0	6	36	1.23
11985935--11985992	22	2.6	22	75	5	55	15	13	36	34	1.87
11994211--11994243	15	2.2	15	100	0	66	27	6	6	60	1.44
11995043--11995082	18	2.2	18	100	0	80	22	5	32	40	1.76
12004307--12004341	3	11.7	3	87	0	52	31	2	2	62	1.24
12004430--12004469	20	2.0	20	90	0	62	25	5	5	65	1.34
12010223--12010289	9	7.4	9	82	0	71	43	23	5	26	1.77
12010223--12010289	27	2.5	27	87	0	98	43	23	5	26	1.77
12010528--12010568	18	2.3	18	91	0	64	12	2	46	39	1.54
12017957--12018005	24	2.0	24	88	7	73	36	22	26	14	1.92
12021373--12021416	18	2.5	18	85	3	54	18	2	2	77	0.98
12022395--12022432	18	2.2	17	86	13	51	81	0	0	18	0.69
12023758--12023795	18	2.1	19	85	5	51	18	26	2	52	1.58
12033565--12033615	22	2.3	22	82	0	66	35	19	13	31	1.91
12036368--12036406	17	2.4	16	83	8	51	69	0	0	30	0.89
12036350--12036395	22	2.1	22	84	8	58	67	2	2	28	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12036368--12036419	11	4.6	11	79	9	52	67	1	0	30	1.02
12039444--12039576	34	3.9	34	81	0	149	28	22	23	25	1.99
12039748--12039812	14	4.6	14	86	3	87	29	16	13	40	1.88
12039746--12039812	28	2.4	28	89	0	107	29	17	13	38	1.88
12041324--12041410	19	4.6	19	76	10	81	64	1	1	33	1.09
12041323--12041411	9	9.4	9	74	11	72	64	1	1	33	1.09
12043107--12043147	15	2.7	15	92	0	64	51	24	0	24	1.49
12043102--12043154	15	3.6	15	84	2	63	49	30	0	20	1.50
12048806--12048850	20	2.4	19	82	10	58	48	0	4	46	1.22
12049635--12049693	26	2.3	25	80	13	66	42	1	1	54	1.20
12051810--12051839	15	2.0	15	100	0	60	33	0	0	66	0.92
12053990--12054063	28	2.6	28	82	0	85	20	5	21	52	1.66
12054010--12054063	14	3.9	14	72	0	54	22	3	22	51	1.63
12058896--12058940	22	2.0	24	82	8	58	62	6	6	24	1.44
12059066--12059172	51	2.1	52	84	5	137	55	6	5	32	1.49
12059355--12059411	31	2.0	29	86	13	82	45	0	7	47	1.30
12059439--12059500	3	20.3	3	90	9	99	66	0	0	33	0.92
12059935--12059979	23	2.0	22	91	4	72	40	17	4	37	1.70
12059958--12060032	19	3.8	19	91	6	123	36	16	10	37	1.83
12060805--12061180	44	8.7	43	81	5	370	27	25	17	29	1.97
12060823--12061140	126	2.5	126	83	3	393	27	24	17	29	1.97
12061241--12061382	44	3.3	43	64	11	108	17	26	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12061394--12061530	44	3.1	44	65	8	125	20	24	28	27	1.99
12061180--12061757	88	6.6	88	87	0	787	20	23	28	28	1.99
12068264--12068322	3	20.0	3	74	22	54	67	0	0	32	0.91
12068262--12068322	18	3.1	21	81	13	69	67	0	0	32	0.91
12068528--12068566	19	2.0	21	85	10	55	69	5	10	15	1.34
12068727--12068784	22	2.6	22	84	7	73	43	17	3	36	1.66
12070141--12070181	20	2.0	21	85	4	57	56	4	2	36	1.34
12070140--12070217	30	2.5	30	84	12	88	52	7	1	38	1.38
12070214--12070773	234	2.4	232	82	10	634	46	7	8	38	1.61
12070952--12070993	13	2.9	15	83	16	61	54	4	0	40	1.21
12071447--12071482	18	2.0	18	88	0	54	52	11	2	33	1.51
12077516--12077549	13	2.5	13	95	4	59	70	0	14	14	1.17
12077516--12077549	7	5.0	7	92	7	61	70	0	14	14	1.17
12079688--12079741	24	2.2	24	90	0	81	27	16	18	37	1.93
12083452--12083497	7	6.6	7	97	0	83	41	10	30	17	1.84
12083473--12083596	51	2.4	51	97	0	230	33	13	23	29	1.93
12093925--12094069	23	6.2	23	85	3	191	27	13	19	40	1.88
12093925--12094080	71	2.2	69	84	4	179	28	13	19	38	1.89
12098786--12098835	22	2.4	22	86	6	77	22	10	18	50	1.76
12100295--12100542	50	4.8	51	80	7	227	24	27	20	27	1.99
12101981--12102005	13	1.9	13	100	0	50	32	4	24	40	1.73
12103112--12103237	43	2.9	42	79	10	139	22	18	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12104952--12105192	50	4.8	50	83	4	288	27	16	26	29	1.97
12107136--12107253	23	5.0	24	77	9	107	28	11	17	41	1.85
12107129--12107252	47	2.6	48	82	7	137	29	11	16	42	1.83
12107233--12107285	23	2.3	23	90	0	88	22	13	26	37	1.91
12113888--12114069	42	4.4	41	71	8	143	36	18	19	25	1.94
12115964--12116020	11	5.2	11	74	16	55	54	1	1	42	1.21
12121715--12121750	17	2.1	17	100	0	72	11	11	11	66	1.45
12122149--12122212	33	1.9	34	87	6	96	43	17	4	34	1.69
12123106--12123161	23	2.4	23	96	0	103	21	8	26	42	1.82
12123250--12123367	59	2.0	59	100	0	236	28	15	22	33	1.94
12124407--12124588	95	1.9	96	95	1	330	49	6	7	36	1.56
12124407--12124588	48	3.8	48	96	1	330	49	6	7	36	1.56
12127755--12127963	92	2.3	91	86	5	278	45	3	3	46	1.39
12127891--12127938	26	1.9	25	84	16	64	45	0	2	52	1.12
12127979--12128271	120	2.4	120	92	5	470	42	3	4	49	1.39
12128104--12128155	15	3.6	15	80	12	56	44	0	1	53	1.11
12128233--12128274	15	2.7	16	82	14	52	45	0	2	52	1.13
12128224--12128265	15	2.9	15	82	10	52	47	0	0	52	1.00
12128208--12128521	157	2.0	154	93	1	538	47	4	3	45	1.39
12128377--12128411	18	2.0	17	88	5	52	45	0	0	54	0.99
12128644--12128679	16	2.2	16	100	0	72	38	36	0	25	1.56
12130966--12131022	28	2.0	28	100	0	114	36	7	14	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12133550--12133782	49	4.7	50	82	3	249	26	21	29	22	1.99
12133985--12134027	20	2.2	20	87	8	61	58	2	27	11	1.46
12143208--12143244	18	2.1	19	90	10	60	29	13	0	56	1.37
12153096--12153123	3	9.3	3	100	0	56	32	0	0	67	0.91
12157625--12157669	23	1.9	24	86	4	65	20	2	51	26	1.59
12157743--12157820	34	2.2	34	82	10	95	29	24	24	21	1.99
12160020--12160060	15	2.7	15	84	3	55	31	0	0	68	0.90
12166498--12166645	72	2.1	72	88	0	215	20	27	22	28	1.99
12171509--12171542	14	2.4	14	95	0	59	58	0	2	38	1.13
12171830--12171892	29	2.2	28	91	2	99	33	0	1	65	1.03
12171818--12171923	9	11.8	9	75	16	51	36	1	0	60	1.14
12171830--12171892	19	3.3	19	71	6	56	33	0	1	65	1.03
12171843--12171903	28	2.1	29	82	8	72	39	0	0	60	0.97
12171831--12171947	9	12.7	9	73	15	69	34	1	1	62	1.15
12172052--12172278	88	2.6	90	82	2	253	35	10	18	34	1.86
12184614--12184639	13	2.0	13	100	0	52	69	7	7	15	1.35
12184894--12184928	18	1.9	18	88	0	52	28	17	11	42	1.83
12190261--12190484	79	2.8	79	85	6	292	25	27	22	24	2.00
12190261--12190484	40	5.7	40	87	6	280	25	27	22	24	2.00
12198177--12198217	22	1.9	21	85	5	55	48	9	7	34	1.64
12205973--12206236	40	6.6	40	78	4	228	31	18	29	20	1.96
12205976--12206236	80	3.3	79	80	1	279	31	18	29	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12206136--12206200	20	3.3	19	70	12	51	29	18	35	16	1.93
12205973--12206236	120	2.2	120	76	2	262	31	18	29	20	1.96
12206675--12206710	15	2.5	14	82	8	54	25	0	2	72	0.98
12210687--12210855	91	1.9	91	94	0	302	34	13	18	32	1.90
12214723--12214817	7	13.6	7	95	0	172	54	0	2	43	1.12
12224854--12224971	44	2.7	44	81	6	150	48	4	22	24	1.68
12224854--12224958	43	2.4	44	85	4	133	53	3	20	21	1.62
12231467--12231491	9	2.8	9	100	0	50	32	24	0	44	1.54
12245478--12245588	22	5.0	22	70	12	93	29	20	17	32	1.95
12245478--12245598	44	2.7	43	71	9	109	28	21	18	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204