genome.fa.s26.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  178  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52716516--52717213	99	7.0	99	84	2	783	30	20	22	26	1.98
52716511--52717212	198	3.5	198	85	1	924	30	20	22	25	1.98
52717229--52717633	45	9.0	45	81	9	441	27	15	24	32	1.95
52717223--52717633	90	4.6	90	88	0	606	27	15	24	32	1.95
52717223--52717633	135	3.0	136	81	10	500	27	15	24	32	1.95
52719301--52719345	19	2.4	19	85	3	56	26	6	2	64	1.30
52720319--52720392	30	2.5	30	93	2	123	55	37	2	4	1.33
52720317--52720392	28	2.6	29	87	8	118	56	36	2	3	1.32
52720340--52720402	29	2.1	30	85	2	83	68	25	3	3	1.19
52720340--52720402	27	2.2	28	86	8	83	68	25	3	3	1.19
52720641--52720665	13	1.9	13	100	0	50	12	0	0	88	0.53
52721236--52721278	23	2.0	23	86	9	63	27	13	6	51	1.67
52721594--52721628	16	2.3	15	90	5	52	31	2	2	62	1.24
52733467--52734069	72	8.5	72	89	5	896	30	16	20	31	1.95
52734920--52734991	28	2.7	27	89	10	112	56	36	2	4	1.33
52734920--52735001	29	3.2	25	80	14	94	62	31	2	3	1.26
52734941--52735001	28	2.1	29	81	3	70	65	27	3	3	1.24
52735240--52735264	13	1.9	13	100	0	50	12	0	0	88	0.53
52735217--52735274	29	1.9	31	82	6	75	10	10	0	79	0.94
52735832--52735874	23	2.0	23	86	9	63	27	13	6	51	1.67
52736188--52736222	16	2.3	15	90	5	52	31	2	2	62	1.24
52737656--52737705	20	2.5	20	86	0	73	42	34	6	18	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52739292--52739332	19	2.2	18	86	4	55	60	2	2	34	1.23
52739536--52739609	31	2.4	31	77	4	78	44	10	13	31	1.78
52749852--52749897	21	2.2	21	88	0	65	8	30	36	23	1.85
52750163--52750193	2	15.5	2	100	0	62	51	0	48	0	1.00
52752918--52752957	11	3.5	11	83	12	53	60	0	0	40	0.97
52752925--52752950	13	2.0	13	100	0	52	53	0	0	46	1.00
52752913--52752972	24	2.5	24	69	0	66	68	0	0	31	0.90
52756756--52756804	25	2.0	25	84	11	66	40	0	6	53	1.26
52757195--52757237	20	2.2	20	87	8	61	34	0	2	62	1.08
52757164--52757230	15	4.3	15	67	10	53	41	0	2	55	1.15
52758014--52758086	37	1.9	38	83	8	96	43	1	23	31	1.62
52758544--52758575	7	4.6	7	96	0	55	53	0	15	31	1.43
52760739--52760783	21	2.4	17	75	25	54	28	8	22	40	1.84
52760744--52760787	21	2.1	21	95	0	79	27	9	25	38	1.86
52763655--52763698	19	2.2	20	81	14	56	36	0	2	61	1.09
52763828--52763875	24	2.0	24	100	0	96	45	16	12	25	1.82
52764133--52764614	172	2.8	168	79	8	465	31	11	8	47	1.70
52764316--52764988	370	1.8	373	81	6	864	31	12	8	46	1.73
52771703--52771780	41	1.9	41	81	5	95	37	8	7	46	1.64
52779266--52779322	28	2.0	28	100	0	114	50	14	3	31	1.59
52786720--52786764	2	22.5	2	100	0	90	48	0	51	0	1.00
52792830--52792945	41	2.9	39	84	8	128	32	3	0	63	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52792880--52792961	41	2.0	42	90	2	130	37	2	0	59	1.11
52792862--52792961	30	3.4	30	85	10	127	37	2	0	61	1.08
52793439--52793873	237	1.8	235	83	3	570	45	8	12	33	1.72
52797578--52797636	28	2.0	30	90	9	95	30	13	25	30	1.94
52799549--52800219	114	5.9	114	92	0	1135	32	15	25	26	1.95
52800139--52800295	76	2.1	75	93	1	269	38	16	22	22	1.93
52803968--52804201	9	25.8	9	76	6	195	49	15	2	32	1.60
52804043--52804202	37	4.4	37	76	10	123	48	17	2	31	1.60
52804023--52804222	91	2.2	91	87	1	258	49	17	2	31	1.58
52816778--52816814	9	4.1	9	92	0	65	29	10	13	45	1.77
52826159--52826256	11	8.3	11	72	20	56	42	3	30	23	1.69
52826139--52826260	22	5.8	21	69	22	69	45	2	27	24	1.66
52827161--52827234	33	2.4	30	80	14	73	50	12	12	25	1.74
52827161--52827226	33	2.0	33	88	5	98	50	13	13	22	1.77
52827278--52827336	21	2.8	21	77	15	59	47	1	1	49	1.21
52828407--52828442	12	3.1	11	88	11	54	58	2	2	36	1.27
52829757--52829820	33	1.9	33	90	6	103	53	12	12	21	1.71
52829872--52829930	21	2.8	21	77	15	59	45	3	1	49	1.28
52829950--52829986	16	2.3	17	81	13	51	40	0	2	56	1.13
52830084--52830139	31	1.9	31	85	10	82	46	0	0	53	1.00
52831339--52831375	15	2.4	16	86	13	51	64	5	0	29	1.15
52831995--52832019	5	5.0	5	100	0	50	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52837482--52837525	21	2.1	21	86	0	61	31	9	0	59	1.29
52854082--52854125	18	2.6	17	82	7	54	52	9	20	18	1.72
52855519--52855583	29	2.2	30	83	10	80	44	0	3	52	1.16
52855677--52855764	38	2.2	40	86	6	117	36	3	5	54	1.41
52857584--52857635	24	2.2	24	89	0	77	55	9	1	32	1.43
52859886--52859923	13	2.9	13	92	0	67	23	10	26	39	1.87
52861251--52861298	20	2.5	19	76	6	51	62	6	14	16	1.51
52862451--52862491	17	2.5	17	85	14	59	17	2	0	80	0.82
52867709--52867748	16	2.5	16	91	0	62	47	2	7	42	1.45
52867759--52867928	59	2.9	59	98	0	322	40	5	9	44	1.59
52871362--52871416	29	2.0	28	82	7	67	12	21	5	60	1.53
52918261--52918446	30	6.2	30	94	0	309	25	25	36	12	1.91
52919745--52919779	15	2.3	15	90	0	52	31	22	0	45	1.53
52922431--52922676	125	2.0	125	91	0	402	29	16	23	30	1.96
52925878--52925934	25	2.3	25	93	3	98	43	14	0	42	1.44
52925902--52925989	45	2.0	45	88	0	131	51	14	0	34	1.43
52932025--52932073	22	2.1	23	88	7	73	51	0	6	42	1.27
52932232--52932290	3	20.0	3	78	16	61	66	1	0	32	1.02
52932232--52932288	10	6.0	10	75	19	59	66	1	0	31	1.02
52932259--52932303	19	2.2	19	84	11	54	66	2	4	26	1.22
52933624--52933945	42	7.5	43	72	10	189	29	22	19	28	1.98
52933952--52934462	100	5.1	100	83	3	602	25	23	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52933998--52934461	199	2.3	200	88	2	664	25	23	20	29	1.99
52934002--52934468	50	9.4	50	66	7	232	25	24	20	29	1.99
52934655--52934833	88	2.0	88	86	2	252	23	25	22	28	1.99
52936011--52936054	15	3.1	15	87	12	58	13	18	0	68	1.22
52936013--52936054	7	6.0	7	79	20	52	14	16	0	69	1.20
52940971--52941079	24	4.6	23	69	21	73	48	0	11	39	1.45
52942347--52942393	24	2.0	23	84	12	60	51	4	14	29	1.62
52946673--52946698	5	5.2	5	100	0	52	38	0	0	61	0.96
52951989--52952065	37	2.1	36	83	7	93	38	7	1	51	1.39
52952861--52953072	96	2.2	96	88	1	318	43	2	17	36	1.62
52953130--52953530	126	3.2	125	91	0	622	33	18	20	27	1.96
52957191--52957231	18	2.3	18	82	0	55	41	4	29	24	1.75
52957858--52957887	7	4.4	7	95	4	53	60	13	0	26	1.34
52957851--52957884	14	2.4	15	85	14	54	58	14	0	26	1.36
52968846--52968969	30	4.1	30	93	1	203	25	24	6	43	1.78
52968856--52968963	15	7.2	15	67	12	78	25	22	7	44	1.79
52973534--52973657	30	4.1	30	91	1	185	25	23	7	44	1.79
52973544--52973651	15	7.2	15	64	12	60	25	21	8	45	1.79
52976024--52976051	2	14.0	2	100	0	56	0	50	0	50	1.00
52977711--52977737	14	1.9	14	100	0	54	0	11	0	88	0.50
52986379--52986408	4	7.5	4	100	0	60	23	0	0	76	0.78
52988066--52988279	45	4.8	45	82	5	245	29	17	28	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52988066--52988279	90	2.4	90	86	3	288	29	17	28	25	1.97
52991108--52991147	21	1.9	21	94	0	71	15	27	12	45	1.82
52996866--52996898	11	2.8	12	90	9	50	15	15	9	60	1.58
52999806--52999839	16	2.2	15	89	5	50	67	0	5	26	1.13
53000125--53000282	49	3.2	48	95	2	273	31	7	31	30	1.85
53000399--53000477	37	2.1	37	90	0	122	24	18	31	25	1.98
53004670--53005121	47	9.6	47	91	2	717	29	29	8	32	1.87
53004670--53005121	96	4.8	94	91	2	717	29	29	8	32	1.87
53004670--53005121	143	3.2	143	93	0	748	29	29	8	32	1.87
53012252--53012546	143	2.1	141	86	2	403	23	18	18	40	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204