genome.fa.s26.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  110  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34207297--34207344	18	2.7	18	77	9	53	41	0	2	56	1.11
34208149--34208200	24	2.3	22	80	9	59	57	0	1	40	1.10
34210295--34210364	36	1.9	36	100	0	140	22	20	31	25	1.98
34216965--34217035	38	1.9	38	88	5	110	29	15	1	53	1.51
34217595--34217640	19	2.5	19	86	10	60	78	10	8	2	1.05
34218991--34219103	44	2.5	44	84	9	133	29	17	23	30	1.97
34219215--34220012	143	5.6	143	86	2	960	30	19	22	27	1.98
34219455--34219573	44	2.7	44	82	1	121	27	21	24	26	1.99
34227753--34227789	19	1.9	19	100	0	74	37	8	21	32	1.83
34230302--34230374	35	2.0	36	92	5	121	52	4	8	35	1.51
34233001--34233028	14	2.0	14	100	0	56	28	14	14	42	1.84
34235071--34235131	6	10.0	6	85	3	86	18	0	1	80	0.80
34238425--34238492	6	11.5	6	77	14	70	16	1	4	77	0.99
34240526--34240595	27	2.6	27	95	2	113	31	28	12	27	1.93
34240526--34240623	28	3.5	28	90	2	135	31	28	13	26	1.94
34244070--34244110	16	2.6	16	88	0	55	12	2	4	80	0.97
34245146--34245219	4	18.5	4	75	18	57	75	0	4	20	0.96
34245145--34245228	22	3.7	22	83	13	100	75	0	3	21	0.96
34245146--34245228	6	13.5	6	75	20	50	75	0	3	20	0.94
34247620--34247666	24	2.0	24	95	0	85	42	23	8	25	1.82
34249162--34249197	15	2.5	14	86	8	54	44	8	0	47	1.33
34250712--34250777	15	4.4	16	68	26	54	19	25	0	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34250696--34250782	43	2.0	44	90	2	140	21	24	1	52	1.53
34251929--34251961	15	2.2	15	94	0	57	30	6	0	63	1.18
34253206--34253268	33	1.9	33	96	0	117	17	33	30	19	1.95
34253381--34253453	30	2.4	30	90	2	110	19	32	26	21	1.97
34260751--34260790	12	3.5	12	77	22	50	47	0	7	45	1.31
34262595--34262652	20	2.8	21	75	14	57	48	1	0	50	1.11
34262599--34262641	22	1.9	22	85	4	59	51	2	0	46	1.13
34271096--34271139	20	2.2	20	100	0	88	36	18	9	36	1.82
34272484--34272523	20	2.1	19	95	4	71	35	0	7	57	1.27
34280074--34280123	20	2.5	20	83	0	55	34	8	4	54	1.49
34280096--34280551	227	2.0	224	89	2	691	31	14	10	42	1.80
34283437--34283477	20	2.0	20	85	9	55	65	19	2	12	1.36
34288934--34288977	21	2.1	21	95	0	79	31	29	4	34	1.78
34288940--34288986	21	2.3	20	89	10	69	36	27	4	31	1.76
34296187--34296290	41	2.5	41	84	0	136	22	29	16	31	1.95
34300303--34300336	7	4.9	7	100	0	68	58	14	0	26	1.36
34303008--34303070	21	2.8	22	78	7	56	47	3	1	47	1.27
34309525--34309662	57	2.4	57	80	9	145	42	1	4	51	1.30
34310374--34310428	15	3.8	15	73	21	55	36	0	0	63	0.95
34311437--34311485	7	6.7	7	78	17	55	20	0	0	79	0.73
34311428--34311498	30	2.4	29	90	4	115	29	0	0	70	0.88
34311442--34311499	19	3.5	18	71	28	65	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34312341--34312388	25	2.0	23	84	8	60	58	4	14	22	1.54
34312579--34312828	132	1.9	132	89	3	387	37	10	26	25	1.88
34313126--34313157	13	2.5	13	95	5	57	43	0	6	50	1.27
34317152--34317201	19	2.6	19	83	0	55	6	8	12	74	1.22
34317161--34317231	32	2.3	31	85	4	90	8	8	11	71	1.30
34318206--34318249	18	2.5	17	82	10	61	34	6	2	56	1.38
34318202--34318250	19	2.6	20	84	12	68	34	6	2	57	1.35
34318499--34318562	29	2.2	29	88	0	92	39	1	28	31	1.66
34318600--34318634	18	1.9	18	88	0	52	28	2	11	57	1.48
34323316--34323362	20	2.3	20	82	7	60	80	6	2	10	0.96
34323869--34323929	29	2.0	29	87	6	86	39	3	26	31	1.72
34323975--34324013	18	2.2	18	100	0	78	28	5	10	56	1.54
34329989--34330027	18	2.2	17	86	13	53	33	0	20	46	1.51
34330253--34330374	23	5.3	23	85	2	174	22	22	26	29	1.99
34330253--34330374	46	2.7	46	90	2	192	22	22	26	29	1.99
34340081--34340106	8	3.2	8	100	0	52	26	15	23	34	1.94
34340196--34340317	23	5.3	23	75	7	122	25	18	22	32	1.97
34340196--34340317	46	2.7	46	90	0	190	25	18	22	32	1.97
34350067--34350125	29	2.0	30	83	3	75	32	1	13	52	1.50
34357029--34357076	22	2.1	22	84	3	60	54	2	8	35	1.42
34361552--34361691	69	2.0	69	88	2	210	23	15	22	37	1.93
34366289--34366473	93	2.0	93	97	0	352	42	2	17	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34366305--34366502	93	2.1	92	86	7	267	45	3	13	37	1.60
34368497--34368527	15	2.1	15	93	0	53	48	16	6	29	1.70
34374844--34374887	22	2.0	22	91	4	72	40	13	4	40	1.65
34375476--34375500	13	1.9	13	100	0	50	40	28	8	24	1.83
34377292--34377321	3	10.0	3	100	0	60	0	33	0	66	0.92
34386840--34386891	26	2.0	26	96	0	95	46	9	26	17	1.79
34392067--34392100	18	1.9	18	88	5	52	55	0	2	41	1.15
34394080--34394190	38	2.9	38	82	2	116	37	18	10	32	1.86
34394594--34394635	21	2.0	21	90	9	68	85	0	7	7	0.73
34394594--34394627	17	1.9	18	94	5	61	88	0	2	8	0.62
34395055--34395104	19	2.5	21	87	9	70	40	4	0	56	1.18
34395364--34395398	16	2.2	16	89	0	52	37	22	2	37	1.69
34397460--34397496	9	4.1	9	92	0	65	45	13	10	29	1.77
34398521--34398546	5	5.2	5	100	0	52	19	19	19	42	1.90
34400261--34400285	7	3.6	7	100	0	50	0	12	0	88	0.53
34405863--34406109	50	4.8	51	80	4	223	22	28	21	27	1.99
34411674--34411778	53	2.0	53	96	0	192	41	15	5	37	1.71
34411691--34411803	53	2.1	53	83	3	138	42	15	6	35	1.73
34413707--34413763	30	1.9	30	85	7	80	33	14	21	31	1.92
34413990--34414174	51	3.6	51	81	5	216	23	16	28	31	1.96
34420421--34420539	51	2.4	51	87	7	163	46	6	16	30	1.73
34420423--34420580	57	3.0	51	77	13	147	45	7	16	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34420468--34420638	59	2.9	59	78	6	188	46	7	17	28	1.75
34422057--34422427	183	2.0	183	98	0	724	33	8	21	36	1.84
34431250--34431456	105	2.0	105	97	0	387	19	24	21	34	1.97
34438785--34438853	29	2.4	28	83	7	93	26	20	18	34	1.96
34442988--34443034	25	1.9	25	82	4	60	70	10	8	10	1.35
34454569--34454702	48	2.8	48	95	3	234	23	16	34	25	1.95
34459594--34459651	28	2.1	28	100	0	116	29	25	24	20	1.99
34465254--34465298	19	2.4	19	85	7	56	22	6	4	66	1.33
34465276--34465312	15	2.5	14	91	8	56	18	10	0	70	1.16
34469365--34469603	40	5.9	40	86	0	325	17	30	17	34	1.93
34469370--34469506	20	6.8	20	67	9	91	18	29	17	35	1.94
34469504--34469569	20	3.3	20	68	8	62	12	34	18	34	1.88
34473434--34473714	27	10.5	27	82	6	295	42	18	20	18	1.89
34473430--34473715	54	5.3	54	81	5	330	42	18	20	18	1.90
34473434--34473715	80	3.5	80	81	5	345	42	18	20	18	1.89
34473430--34473708	107	2.6	106	84	5	330	42	18	20	18	1.89
34474055--34474135	28	2.9	28	86	0	108	23	24	20	30	1.99
34479716--34479884	55	3.1	55	96	0	311	26	12	20	41	1.87
34480139--34480176	19	2.0	20	89	5	60	18	31	10	39	1.85
34482674--34482767	27	3.5	26	81	11	118	43	15	21	19	1.88
34482770--34482834	28	2.4	28	84	2	87	43	21	20	15	1.88
34482698--34482837	73	1.9	72	84	4	183	42	17	21	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34483178--34483281	27	3.3	33	77	18	121	23	25	23	28	1.99
34487987--34488068	35	2.3	35	89	2	128	43	32	9	13	1.77
34489628--34489671	22	1.9	22	86	9	61	38	15	2	43	1.60
34497320--34497363	22	1.9	22	86	9	61	38	13	2	45	1.56
34497846--34497874	14	2.0	15	93	6	51	13	6	3	75	1.13
34499363--34499545	40	4.6	39	82	4	197	25	27	21	25	1.99
34499477--34499554	40	1.9	41	82	10	97	26	28	21	23	1.99
34507083--34507129	25	1.9	24	87	12	69	34	8	0	57	1.29
34513537--34513769	27	8.5	27	85	3	259	42	20	19	17	1.89
34514086--34514174	28	3.2	28	82	6	110	25	24	20	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204