genome.fa.s26.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  159  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48081263--48081288	12	2.2	12	100	0	52	26	7	15	50	1.71
48081419--48081559	70	2.0	70	86	5	196	27	20	19	32	1.97
48081938--48081968	16	1.9	16	93	0	53	35	19	6	38	1.77
48085832--48085957	62	2.0	62	90	0	198	23	29	11	36	1.89
48087286--48087361	36	2.1	36	92	0	125	18	13	28	39	1.88
48089939--48089986	3	16.0	3	100	0	96	66	0	0	33	0.92
48096871--48096940	29	2.5	26	77	18	70	42	1	1	54	1.18
48096889--48096938	13	3.2	16	70	18	52	48	0	0	52	1.00
48096881--48096938	29	2.0	30	83	10	75	44	1	1	51	1.21
48097008--48097064	15	3.5	15	69	17	51	49	1	1	47	1.22
48098526--48098550	2	12.5	2	100	0	50	52	0	0	48	1.00
48106544--48106584	19	2.2	19	95	0	73	21	26	17	34	1.95
48107485--48107556	29	2.4	29	77	15	76	45	8	13	31	1.74
48107632--48107675	23	2.0	21	82	8	52	22	9	11	56	1.62
48108084--48108142	30	2.0	30	96	0	109	30	3	8	57	1.45
48118121--48118482	185	2.0	184	86	4	507	30	19	22	27	1.98
48118303--48118818	114	4.5	113	82	7	531	30	17	24	26	1.97
48119374--48119430	7	8.0	7	86	3	69	15	0	40	43	1.47
48121244--48121272	15	1.9	15	100	0	58	20	10	20	48	1.79
48121600--48121641	13	3.3	12	93	3	66	35	2	0	61	1.09
48121685--48121774	13	6.8	13	73	7	74	41	8	4	45	1.55
48122525--48122979	9	51.7	9	67	20	182	46	19	1	32	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48122530--48122604	32	2.3	31	77	8	78	49	17	2	30	1.60
48122674--48122742	30	2.3	31	87	7	99	47	15	0	36	1.46
48122703--48122868	77	2.2	73	91	4	226	46	21	1	30	1.62
48122815--48122914	34	3.2	33	77	18	99	48	21	1	30	1.57
48122849--48122917	34	2.0	34	94	0	120	50	18	0	30	1.47
48124746--48124816	21	3.4	21	82	0	79	35	16	40	7	1.76
48125151--48125320	42	4.0	42	90	0	268	32	22	20	24	1.98
48136075--48136115	22	1.9	21	90	5	64	43	4	0	51	1.23
48140374--48140411	8	5.0	8	93	6	62	73	13	0	13	1.09
48140374--48140407	7	4.7	7	96	3	59	76	11	0	11	1.02
48140370--48140421	22	2.4	21	81	9	68	73	9	5	11	1.25
48141544--48141654	42	2.6	43	77	5	109	33	11	28	26	1.91
48142770--48144124	50	27.1	50	70	5	709	32	24	19	22	1.97
48142770--48144113	100	13.4	100	86	1	1458	32	24	19	22	1.97
48145718--48145758	22	1.9	21	90	5	64	43	4	0	51	1.23
48153682--48153819	62	2.2	62	90	0	231	24	23	21	29	1.99
48159621--48159665	20	2.2	20	80	7	56	60	0	4	35	1.17
48159670--48159739	21	3.6	18	73	16	59	64	1	0	34	1.03
48159675--48159736	20	3.0	21	73	17	67	66	1	0	32	1.02
48166279--48166310	17	1.9	16	93	6	55	34	0	0	65	0.93
48166453--48166488	16	2.2	16	90	9	56	55	5	22	16	1.62
48177598--48177651	23	2.3	23	87	0	72	22	29	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48181492--48181608	44	2.7	44	83	11	159	29	29	18	23	1.98
48184726--48184786	25	2.4	25	80	2	68	32	18	27	21	1.96
48188896--48188921	2	13.0	2	100	0	52	50	0	0	50	1.00
48208270--48208328	21	2.8	20	80	14	57	54	3	1	40	1.27
48208320--48208364	16	2.7	17	79	6	56	60	0	0	40	0.97
48217683--48217746	20	3.4	19	85	6	85	57	1	0	40	1.08
48217699--48217777	8	8.8	9	74	16	58	53	2	0	44	1.14
48217690--48217752	19	3.2	20	86	6	85	55	1	0	42	1.09
48217704--48217808	44	2.3	44	81	10	115	51	1	0	45	1.18
48217698--48217771	27	2.8	27	82	11	84	51	1	0	47	1.09
48217715--48217808	44	2.2	44	84	9	122	50	2	1	46	1.20
48217698--48217778	9	9.0	9	73	15	69	53	2	0	44	1.14
48219421--48219458	20	1.9	20	84	10	51	50	2	15	31	1.58
48219897--48219987	3	29.3	3	93	4	146	63	0	4	31	1.14
48222423--48222630	72	2.8	73	80	4	204	27	17	20	34	1.95
48226573--48226636	31	2.1	31	85	5	85	21	14	1	62	1.40
48231748--48231772	13	1.9	13	100	0	50	32	4	0	64	1.12
48231778--48231819	17	2.5	17	88	0	66	30	7	7	54	1.54
48233730--48233777	24	2.0	24	95	0	87	29	27	16	27	1.97
48240991--48241028	12	2.8	13	88	11	51	65	0	0	34	0.93
48241007--48241040	15	2.3	15	89	0	50	70	2	0	26	1.01
48241248--48241286	19	2.0	21	85	10	55	69	5	10	15	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48241492--48241556	19	3.3	19	95	4	112	36	12	9	41	1.75
48241865--48241981	44	2.7	44	78	6	139	29	20	18	31	1.97
48242036--48242326	44	6.7	44	71	14	158	28	23	20	27	1.99
48241911--48242337	217	2.0	217	91	1	696	28	23	19	28	1.98
48242313--48243153	132	6.5	132	87	3	1215	24	23	20	31	1.98
48242336--48243109	257	3.0	257	93	0	1314	24	23	20	31	1.98
48242313--48243153	389	2.2	384	88	3	1229	24	23	20	31	1.98
48242919--48243103	44	4.2	44	65	8	124	26	22	20	30	1.98
48244372--48244430	15	3.9	15	77	16	50	0	22	1	76	0.88
48244391--48244424	15	2.3	15	94	0	59	0	20	0	79	0.73
48244392--48244428	19	1.9	19	89	10	58	0	18	0	81	0.70
48249051--48249084	3	11.3	3	87	12	52	64	0	0	35	0.94
48249548--48249624	21	3.7	21	87	3	111	38	11	7	41	1.71
48264424--48264469	5	9.2	5	100	0	92	39	0	0	60	0.97
48265363--48265437	19	4.0	19	70	20	68	36	1	26	36	1.65
48265685--48265784	41	2.6	37	73	6	92	22	20	30	28	1.98
48267795--48268030	33	6.7	33	68	19	124	33	27	18	20	1.96
48267808--48268007	75	2.7	75	89	0	310	35	28	15	21	1.94
48271205--48271238	15	2.1	17	89	10	54	35	0	5	58	1.22
48275595--48275638	23	1.9	23	95	0	79	47	18	0	34	1.49
48275597--48275638	11	3.5	13	75	18	54	50	16	0	33	1.46
48287972--48288141	90	1.9	90	96	0	313	47	7	16	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48289518--48289570	18	3.0	17	81	13	63	60	3	11	24	1.47
48294185--48294305	62	1.9	63	86	8	176	27	29	19	23	1.98
48299397--48299422	13	2.0	13	100	0	52	53	0	23	23	1.46
48304715--48304745	13	2.4	13	100	0	62	32	6	16	45	1.72
48304765--48304819	24	2.3	24	96	0	101	30	10	20	38	1.87
48305139--48305163	10	2.5	10	100	0	50	8	0	12	80	0.92
48305649--48305690	16	2.5	18	88	7	54	47	0	0	52	1.00
48305649--48305683	16	2.2	16	94	0	61	45	0	0	54	0.99
48313941--48313974	17	2.1	16	88	5	50	47	26	0	26	1.53
48313939--48314114	39	4.5	39	88	1	237	42	22	6	28	1.78
48330752--48330805	3	18.3	3	92	3	92	35	0	0	64	0.94
48333822--48333991	45	4.0	43	75	11	145	25	18	27	28	1.98
48337213--48337243	12	2.5	12	94	5	53	54	0	9	35	1.33
48338883--48338929	19	2.5	19	86	6	60	25	19	10	44	1.82
48340177--48340213	17	2.1	18	90	5	58	29	24	0	45	1.53
48340918--48341071	1	154.0	1	67	0	65	82	2	9	5	0.92
48340907--48340984	9	8.4	9	81	13	88	84	5	0	10	0.76
48340905--48340984	16	5.1	15	80	10	88	85	5	0	10	0.75
48340925--48341072	12	11.8	12	78	13	102	81	2	10	4	0.93
48340905--48340994	22	4.0	21	81	12	90	82	5	1	11	0.89
48340928--48341053	38	3.3	37	79	10	128	81	3	9	5	0.95
48340919--48341017	47	2.1	45	82	14	112	81	4	6	8	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48340997--48341072	6	12.3	6	89	10	118	82	0	17	0	0.66
48341910--48341961	26	2.0	25	85	11	68	75	0	11	13	1.06
48341912--48341953	18	2.3	19	91	4	68	76	0	11	11	1.03
48343165--48343977	88	9.2	88	93	0	1376	26	23	25	24	2.00
48343211--48344021	44	18.5	44	66	15	347	25	23	25	25	2.00
48343299--48344054	132	5.7	131	68	12	434	25	23	25	24	2.00
48343165--48344087	264	3.5	255	82	8	1071	25	23	25	24	2.00
48344105--48344289	50	3.9	47	78	6	185	32	19	20	27	1.96
48344117--48344310	100	2.0	95	81	7	219	31	21	20	26	1.98
48345691--48345725	3	11.7	3	87	0	52	31	5	0	62	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204