genome.fa.s26.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  141  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43223171--43223220	24	2.1	24	96	0	91	30	48	2	20	1.61
43228131--43228233	51	2.0	51	94	0	179	32	22	10	34	1.88
43228847--43228895	15	3.4	14	80	8	53	20	4	2	73	1.10
43232808--43232868	13	4.6	13	71	4	50	59	1	3	36	1.24
43234510--43234639	41	3.1	41	71	14	129	31	20	18	30	1.96
43234510--43234683	85	2.0	85	84	4	226	31	20	17	31	1.96
43234793--43234977	44	4.3	43	70	13	146	27	21	18	32	1.97
43234577--43234972	142	3.0	132	83	9	543	28	20	18	32	1.96
43247392--43247425	13	2.8	12	91	8	52	20	0	0	79	0.73
43262322--43262392	31	2.4	29	78	4	79	53	12	9	23	1.68
43264008--43264044	18	2.0	20	89	10	60	78	0	21	0	0.75
43267262--43267306	22	2.0	22	83	12	56	33	6	8	51	1.59
43275267--43275328	26	2.3	26	94	2	106	40	20	27	11	1.87
43280752--43280784	16	2.1	17	88	11	52	33	15	0	51	1.43
43287359--43287493	41	3.3	41	94	0	234	27	25	19	28	1.99
43290893--43291028	47	2.9	47	89	1	191	25	22	19	33	1.97
43290997--43291165	91	1.9	91	82	2	214	28	21	16	33	1.95
43296952--43297002	17	2.8	17	83	16	59	35	0	5	58	1.22
43299060--43299134	30	2.6	28	76	17	73	40	2	0	57	1.13
43299734--43299777	19	2.2	20	84	11	56	77	4	2	15	1.04
43302492--43302524	13	2.4	14	85	15	50	36	12	6	45	1.66
43302498--43302523	13	2.0	13	100	0	52	30	15	7	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43309129--43309170	18	2.4	18	96	4	77	35	4	21	38	1.75
43310268--43310328	3	20.3	3	96	0	113	65	32	1	0	1.02
43313202--43313268	28	2.4	28	90	2	100	28	20	26	23	1.99
43313368--43313418	26	2.0	26	92	0	84	33	23	25	17	1.96
43313608--43313717	27	4.0	27	85	3	139	22	19	19	39	1.93
43313710--43313771	27	2.3	27	94	0	106	17	14	24	43	1.86
43317350--43317378	2	14.5	2	100	0	58	51	0	0	48	1.00
43318054--43318190	41	3.3	41	81	2	141	32	25	22	18	1.97
43317999--43318183	82	2.3	82	77	3	185	35	22	21	21	1.96
43318346--43318388	14	2.9	15	76	16	54	53	11	2	32	1.50
43318970--43318995	12	2.2	12	100	0	52	46	23	23	7	1.78
43346427--43346550	50	2.7	44	83	13	185	36	2	20	40	1.66
43346716--43346763	10	4.6	10	77	10	51	47	6	4	41	1.48
43346726--43346772	22	2.1	23	92	4	78	51	4	4	40	1.41
43346715--43346780	32	2.1	32	85	5	89	51	4	4	39	1.43
43347144--43347168	3	8.3	3	100	0	50	36	0	0	64	0.94
43350761--43350917	42	3.7	42	80	0	152	45	17	22	15	1.85
43350813--43350879	21	3.2	21	70	8	64	47	20	19	11	1.81
43354298--43354341	18	2.6	17	85	7	54	61	2	9	27	1.38
43354851--43354890	3	13.7	3	89	5	64	65	32	2	0	1.06
43369798--43369836	14	2.8	14	92	0	60	5	38	5	51	1.46
43381989--43382114	50	2.7	44	81	13	171	36	3	20	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43382280--43382327	10	4.6	10	82	10	60	50	6	2	41	1.39
43382290--43382336	22	2.1	23	96	4	87	53	4	2	40	1.32
43382279--43382344	32	2.1	32	88	5	98	53	4	3	39	1.37
43388029--43388070	3	14.0	3	100	0	84	66	0	0	33	0.92
43391215--43391258	3	14.7	3	95	0	79	70	29	0	0	0.88
43395461--43395492	16	1.9	17	93	6	57	37	21	0	40	1.54
43395653--43395809	43	3.7	42	78	13	144	29	28	19	22	1.98
43395653--43395769	41	2.8	42	83	8	148	30	28	17	23	1.97
43395653--43395810	84	1.9	84	83	7	205	30	28	18	22	1.98
43402648--43402679	16	1.9	17	93	6	57	37	21	0	40	1.54
43402840--43402996	43	3.7	42	82	10	185	29	28	20	21	1.98
43409746--43409777	16	1.9	17	93	6	57	37	21	0	40	1.54
43409937--43410093	43	3.7	42	81	10	167	29	28	20	22	1.98
43428380--43428557	27	6.6	27	84	3	196	29	28	14	26	1.95
43428380--43428557	54	3.3	54	84	3	223	29	28	14	26	1.95
43428401--43428556	81	1.9	82	86	3	226	29	28	14	26	1.95
43436458--43436556	21	4.7	21	73	0	90	43	17	23	16	1.87
43436418--43436574	42	3.8	41	77	3	134	45	15	23	15	1.85
43439694--43439719	3	8.7	3	100	0	52	69	30	0	0	0.89
43450108--43450139	16	1.9	17	93	6	57	37	21	0	40	1.54
43450300--43450455	84	1.9	84	86	8	228	29	29	19	21	1.98
43450300--43450456	43	3.7	42	78	16	180	29	29	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43468241--43468288	10	4.6	10	82	10	60	50	6	2	41	1.39
43468251--43468297	22	2.1	23	96	4	87	53	4	2	40	1.32
43468240--43468305	32	2.1	32	88	5	98	53	4	3	39	1.37
43472049--43472099	22	2.4	20	81	12	57	29	9	0	60	1.28
43472079--43472126	15	3.3	15	82	11	55	35	10	0	54	1.35
43484793--43485122	44	7.6	43	75	10	221	30	21	21	26	1.98
43484963--43485162	87	2.3	88	80	6	208	30	21	21	27	1.98
43484843--43485284	218	2.0	214	79	7	466	30	20	23	26	1.98
43486707--43486741	15	2.3	15	95	0	61	34	8	0	57	1.29
43486707--43486739	12	2.8	12	95	0	57	33	9	0	57	1.30
43486707--43486753	15	3.1	15	90	0	58	34	10	0	55	1.35
43489564--43489669	21	5.0	21	69	0	77	42	17	24	15	1.88
43489522--43489678	42	3.8	41	79	3	143	45	16	23	14	1.84
43503689--43503759	35	2.0	36	88	2	108	38	4	28	29	1.76
43503710--43503759	16	2.8	18	73	14	50	38	2	28	32	1.68
43507054--43507102	20	2.3	22	82	6	66	55	0	0	44	0.99
43508123--43508166	24	1.9	23	86	9	63	54	0	0	45	0.99
43508473--43508574	28	3.5	29	82	9	102	54	0	2	42	1.15
43508514--43508583	31	2.3	31	92	0	113	51	1	7	40	1.38
43508391--43508705	158	2.0	158	93	0	540	52	3	4	39	1.38
43508526--43508592	31	2.2	31	86	0	89	52	2	7	37	1.45
43512382--43512420	21	1.9	21	85	15	55	51	15	15	17	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43513858--43514201	51	6.8	51	78	7	315	29	14	25	29	1.95
43513858--43514195	102	3.3	102	85	4	416	29	14	25	29	1.95
43519150--43519337	51	3.7	51	80	4	218	24	13	27	34	1.93
43519152--43519345	102	1.9	102	86	2	273	24	13	27	34	1.93
43522455--43522509	27	2.0	27	96	0	101	38	16	14	30	1.89
43525943--43526068	61	2.1	61	98	0	243	38	26	7	26	1.84
43526712--43526761	26	1.9	26	100	0	100	58	2	16	24	1.49
43534450--43534497	19	2.6	19	77	6	55	22	33	41	2	1.66
43536369--43536430	31	2.0	31	100	0	124	25	16	6	51	1.68
43541625--43541710	6	14.5	6	85	9	115	16	1	2	80	0.88
43555783--43555825	14	3.1	14	83	3	52	53	0	2	44	1.13
43556070--43556102	17	1.9	17	93	0	57	48	9	9	33	1.66
43560638--43560901	135	2.0	132	88	2	393	28	21	18	31	1.97
43565918--43565961	3	14.7	3	100	0	88	0	34	0	65	0.93
43566773--43566843	19	3.7	19	78	10	65	40	4	0	54	1.20
43566953--43567035	9	9.3	9	76	18	59	34	1	1	62	1.11
43566953--43567035	26	3.1	26	78	16	98	34	1	1	62	1.11
43566953--43567034	17	4.6	19	78	17	79	34	1	1	63	1.10
43576318--43576778	230	2.0	230	96	0	841	34	19	16	29	1.94
43586404--43586469	21	3.3	20	73	12	64	66	0	4	28	1.11
43586836--43586900	20	3.2	21	73	8	62	46	1	4	47	1.32
43587725--43587758	14	2.5	13	86	9	50	44	2	8	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43590505--43590553	24	2.0	25	84	11	66	32	0	4	63	1.13
43591884--43591922	18	2.2	17	86	13	53	33	0	20	46	1.51
43592145--43592220	23	3.3	23	96	0	143	21	21	26	31	1.98
43599486--43599561	23	3.3	23	88	0	116	22	21	26	30	1.99
43610574--43611116	182	3.0	181	86	4	732	26	21	19	32	1.97
43610574--43611147	94	6.2	92	79	8	555	27	21	19	32	1.97
43610591--43611088	44	10.9	44	74	14	402	26	21	19	31	1.97
43624034--43624094	32	1.9	31	83	9	79	1	14	11	72	1.20
43639729--43640148	132	3.2	132	85	1	529	25	24	19	30	1.98
43639877--43640084	44	4.8	44	69	10	129	26	26	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204