genome.fa.s8.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  10  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2897902--2897966	28	2.2	29	81	13	71	27	18	12	41	1.86
2905400--2905474	24	3.1	24	86	0	105	52	8	12	28	1.66
2907402--2907476	24	3.1	24	84	3	98	54	8	9	28	1.60
2912352--2912377	5	5.2	5	100	0	52	80	0	19	0	0.71
2917812--2918052	117	2.1	114	84	7	312	43	11	11	34	1.77
2920444--2920491	19	2.5	19	74	12	53	62	8	14	14	1.53
2922516--2922626	58	1.9	58	100	0	222	30	13	27	28	1.94
2925347--2925493	73	2.0	73	88	2	215	34	12	31	21	1.90
2925347--2925496	39	4.0	38	83	8	191	35	12	30	21	1.91
2930851--2930881	6	5.0	6	96	4	53	16	16	32	35	1.91
2932939--2933157	41	5.3	41	88	2	307	35	21	26	16	1.95
2935582--2935672	34	2.7	34	78	0	101	46	8	1	43	1.42
2935697--2935760	18	3.2	20	86	13	96	42	1	0	56	1.09
2935711--2935746	8	4.2	8	86	13	54	38	0	0	61	0.96
2935741--2935828	34	2.6	33	83	5	113	47	10	1	40	1.45
2935873--2935914	20	2.2	18	91	8	66	40	0	0	59	0.97
2935434--2936246	154	5.2	154	91	5	1271	47	8	0	43	1.41
2935895--2935982	34	2.6	33	82	5	104	46	10	1	42	1.45
2936027--2936068	20	2.2	18	91	8	66	40	0	0	59	0.97
2936049--2936136	34	2.6	33	83	5	113	47	10	1	40	1.45
2936167--2936230	18	3.2	20	82	13	87	40	3	0	56	1.15
2939800--2940072	43	6.3	43	76	8	200	25	19	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2939845--2940067	86	2.6	85	80	4	270	24	20	26	28	1.99
2947865--2947984	58	2.1	58	87	6	172	46	20	0	32	1.56
2949094--2949618	262	2.0	264	88	1	777	30	26	13	29	1.94
2952795--2952873	39	2.0	39	97	0	149	49	29	8	12	1.71
2960299--2960354	29	1.9	29	88	0	85	50	7	8	33	1.61
2960451--2960550	54	1.9	51	90	9	159	27	12	14	47	1.79
2960865--2960898	8	4.1	8	88	7	50	73	0	0	26	0.83
2966669--2966722	25	2.2	25	89	0	81	27	0	25	46	1.53
2966675--2966723	25	2.0	25	95	0	89	24	0	28	46	1.53
2966683--2966735	25	2.1	25	85	0	70	30	0	18	50	1.47
2969200--2969224	13	1.9	13	100	0	50	56	8	28	8	1.57
2978090--2978137	14	3.5	13	79	20	62	75	4	16	4	1.12
2984449--2984496	17	2.8	17	87	0	69	39	2	2	56	1.23
2984449--2984502	17	3.2	17	81	5	65	38	1	1	57	1.20
2985189--2985231	15	2.9	15	89	0	59	55	2	0	41	1.12
2986316--2986578	30	8.9	29	74	12	180	38	23	1	36	1.64
2986316--2986602	59	4.9	58	80	10	257	38	23	1	36	1.64
2986286--2986607	88	3.7	89	80	6	266	38	24	1	35	1.65
2986310--2986632	29	11.0	31	77	11	245	37	25	2	35	1.69
2986411--2986667	29	8.9	29	72	14	140	35	26	3	35	1.75
3018969--3019144	39	4.5	39	95	0	298	17	27	28	26	1.98
3023516--3023576	19	3.2	18	78	17	61	62	1	0	36	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3038072--3038123	22	2.3	23	83	6	61	48	0	23	28	1.51
3045499--3045579	29	2.8	29	92	0	126	54	2	6	37	1.39
3058843--3058967	59	2.1	59	80	5	137	20	16	13	49	1.79
3059193--3059287	31	2.9	32	71	7	84	47	9	16	26	1.77
3059216--3059331	31	3.9	31	70	21	93	48	9	16	25	1.76
3059257--3059310	27	2.0	27	82	10	67	53	9	14	22	1.69
3059740--3059776	18	2.0	19	94	5	67	37	10	8	43	1.69
3061229--3061278	18	2.7	19	74	22	52	46	6	12	36	1.66
3068668--3068728	24	2.5	24	83	0	77	49	13	13	24	1.77
3070657--3070719	24	2.6	24	87	0	90	49	9	15	25	1.75
3072153--3072244	28	3.2	28	69	14	80	35	21	4	38	1.74
3072161--3072246	29	3.0	29	70	11	86	33	20	3	41	1.70
3072356--3072423	31	2.2	31	86	2	93	35	1	11	51	1.48
3076747--3076808	28	2.2	28	91	5	99	25	11	30	32	1.91
3076881--3077079	29	6.8	29	75	12	160	35	2	23	38	1.67
3076833--3077073	58	4.1	58	79	11	163	36	3	23	36	1.72
3076881--3077073	58	3.3	56	83	12	230	36	2	23	37	1.67
3078123--3078211	18	4.4	21	67	19	57	35	2	3	58	1.27
3078157--3078195	3	13.0	3	83	0	51	33	2	2	61	1.23
3078119--3078195	24	3.1	24	76	12	75	36	2	2	58	1.26
3078884--3078946	17	3.7	17	89	0	90	53	3	0	42	1.16
3086194--3086340	64	2.3	64	85	1	188	25	18	14	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3091431--3091477	18	2.6	18	77	12	60	55	2	8	34	1.42
3091998--3092041	20	2.1	21	87	4	63	27	6	13	52	1.66
3092499--3092912	222	1.8	225	86	6	599	31	9	13	44	1.77
3095874--3095940	21	3.2	21	66	19	59	46	1	13	38	1.52
3095872--3095957	41	2.1	41	97	0	163	43	2	12	41	1.56
3095892--3095957	21	3.2	21	64	20	57	42	3	12	42	1.57
3100813--3100885	18	3.8	18	77	18	69	72	5	2	19	1.16
3102822--3102892	35	2.0	35	100	0	142	49	14	11	25	1.76
3110129--3110187	28	2.1	29	96	3	111	64	25	0	10	1.25
3110765--3110807	18	2.4	18	88	7	61	53	0	0	46	1.00
3111046--3111087	20	2.1	20	90	0	66	54	4	2	38	1.34
3112434--3112476	22	2.0	22	82	13	54	30	6	2	60	1.35
3113901--3113929	8	3.6	8	100	0	58	79	0	0	20	0.74
3126738--3126806	31	2.4	27	79	13	75	36	8	13	42	1.75
3126741--3126801	31	2.0	29	87	6	86	36	8	11	44	1.71
3126994--3127052	29	2.0	30	86	3	84	50	16	3	28	1.61
3127571--3127627	20	2.8	21	76	10	64	56	1	0	42	1.10
3130596--3130620	5	5.0	5	100	0	50	60	0	0	40	0.97
3137084--3137113	3	10.0	3	92	0	51	0	36	0	63	0.95
3140763--3140826	27	2.3	26	79	10	65	60	4	4	29	1.37
3154765--3155156	136	2.9	136	87	0	536	31	19	13	35	1.91
3158072--3158123	21	2.5	21	84	6	61	36	3	7	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3160931--3160999	22	3.3	21	72	6	68	8	5	18	66	1.39
3161033--3161121	44	2.0	44	89	4	135	13	5	16	64	1.47
3162464--3162493	5	6.0	5	92	0	51	40	3	0	56	1.16
3164266--3164298	17	1.9	17	88	11	50	15	6	3	75	1.11
3181646--3181678	9	3.7	9	92	8	50	6	3	90	0	0.52
3194965--3195291	162	2.0	163	90	4	520	40	9	9	40	1.70
3197520--3197557	20	1.9	20	88	0	58	31	7	0	60	1.25
3197740--3197799	31	1.9	32	86	3	86	46	8	10	35	1.67
3198918--3198963	22	2.1	22	91	0	74	34	10	4	50	1.57
3202971--3203013	15	2.9	15	79	10	52	25	0	2	72	0.97
3205774--3205811	2	19.0	2	100	0	76	50	0	0	50	1.00
3207094--3207254	84	1.9	84	85	2	225	34	6	9	49	1.62
3208034--3208097	22	2.8	23	79	6	69	51	1	1	45	1.20
3212863--3212919	30	1.9	30	92	0	96	38	5	17	38	1.72
3213041--3213106	31	2.1	31	83	5	80	51	10	10	27	1.69
3213258--3213297	16	2.4	16	87	4	53	45	12	2	40	1.56
3213257--3213288	16	2.0	16	93	0	55	37	15	6	40	1.73
3218328--3218364	14	2.6	15	79	12	51	35	0	2	62	1.10
3218680--3218710	14	2.3	13	94	5	53	38	6	0	54	1.26
3219059--3219121	17	3.9	17	74	17	71	44	1	0	53	1.10
3219059--3219119	24	2.5	24	76	10	70	44	1	0	54	1.10
3222478--3222556	39	2.0	39	100	0	158	34	5	10	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3228224--3228476	58	4.3	59	78	6	250	38	3	27	30	1.74
3228326--3228657	30	11.2	30	71	18	171	37	2	23	36	1.67
3228225--3228451	117	1.9	116	83	7	291	37	3	28	29	1.75
3228226--3228476	59	4.3	57	77	9	217	38	3	26	31	1.73
3228355--3228475	29	4.1	28	71	14	75	37	2	27	33	1.70
3228457--3228657	60	3.4	60	85	7	232	37	1	20	39	1.62
3228434--3228633	89	2.2	88	86	2	283	40	0	20	39	1.56
3228463--3228655	30	6.5	29	79	5	199	37	1	19	40	1.61
3231111--3231150	20	2.0	21	85	5	55	57	2	17	22	1.52
3232585--3232615	16	1.9	16	93	0	53	48	9	12	29	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163