genome.fa.s8.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  69  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18076586--18076665	33	2.4	33	87	2	106	51	5	1	42	1.31
18076611--18076665	16	3.4	16	87	5	83	54	1	0	43	1.10
18076629--18076699	27	2.5	28	82	8	74	56	8	0	35	1.30
18078795--18078873	9	8.9	9	73	20	51	51	15	1	31	1.51
18078789--18078876	40	2.2	40	87	4	133	50	18	1	30	1.54
18080230--18080324	28	3.4	27	86	5	129	24	18	26	30	1.98
18080280--18080419	59	2.4	59	78	2	147	29	15	27	27	1.96
18080406--18080537	59	2.2	59	87	0	183	26	12	30	30	1.93
18080436--18080538	28	3.6	28	76	12	100	23	12	33	31	1.92
18080374--18080509	31	4.5	31	75	9	118	28	13	28	29	1.94
18080315--18080512	90	2.2	90	79	3	236	28	13	28	29	1.94
18081834--18081876	21	2.0	21	86	0	59	37	16	13	32	1.88
18082817--18082862	20	2.2	21	77	11	51	34	0	4	60	1.16
18085056--18085195	61	2.3	61	96	0	253	27	25	19	27	1.99
18086352--18086407	18	2.8	20	76	15	62	44	0	0	55	0.99
18093419--18093476	18	3.2	18	82	4	73	46	0	0	53	1.00
18095105--18095144	20	2.1	19	85	4	53	40	5	7	47	1.54
18100001--18100057	16	3.2	16	70	25	51	70	1	1	26	1.07
18100008--18100086	22	3.8	22	71	17	78	67	5	1	26	1.19
18100001--18100085	40	2.2	39	85	8	120	68	4	1	25	1.16
18100170--18100459	139	2.1	133	78	9	300	54	11	10	24	1.66
18100209--18100518	139	2.2	136	81	3	343	54	10	10	24	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18116899--18117102	43	4.4	45	75	20	192	18	8	14	58	1.61
18116861--18117075	99	2.2	99	99	0	421	18	8	15	57	1.63
18130630--18130702	27	2.5	28	75	14	69	52	1	0	46	1.09
18131093--18131122	15	2.0	15	100	0	60	20	26	20	33	1.97
18132375--18132436	26	2.4	26	86	5	81	69	0	25	4	1.08
18134129--18134168	18	2.2	18	86	0	53	52	12	10	25	1.70
18134791--18134833	18	2.4	18	88	7	61	46	0	0	53	1.00
18142260--18142292	10	3.2	10	95	4	57	48	21	0	30	1.50
18142717--18142913	36	5.5	36	86	0	268	36	23	8	31	1.84
18148257--18148387	29	4.5	29	78	5	120	37	3	24	34	1.74
18148276--18148395	59	2.1	58	84	7	154	35	2	27	34	1.71
18148280--18148395	29	4.0	29	81	10	130	37	2	25	34	1.70
18149342--18149380	16	2.5	15	84	15	53	38	2	0	58	1.12
18150101--18150163	6	10.8	6	77	6	67	52	1	1	44	1.20
18150110--18150164	11	4.8	11	82	6	56	56	1	1	40	1.21
18150108--18150164	23	2.5	23	82	0	78	56	1	1	40	1.20
18150106--18150163	17	3.4	17	82	2	71	53	1	1	43	1.21
18159465--18159495	12	2.6	12	94	0	53	45	3	41	9	1.53
18159929--18159967	17	2.4	17	87	12	55	15	17	15	51	1.77
18172933--18172984	18	2.9	17	91	5	77	1	26	0	71	0.97
18172928--18172984	24	2.4	24	82	5	62	1	26	0	71	0.95
18183258--18183385	64	2.0	64	100	0	256	29	6	17	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18183934--18184052	2	60.5	2	72	9	66	40	9	1	48	1.45
18183852--18184071	54	4.1	56	78	13	212	38	10	2	49	1.49
18183934--18184047	32	3.5	33	82	8	135	40	8	1	49	1.44
18186170--18186265	41	2.3	41	92	0	156	33	31	11	23	1.90
18195472--18195516	23	2.0	23	100	0	90	46	8	13	31	1.74
18195476--18195523	23	2.3	20	82	13	53	43	10	10	35	1.73
18197097--18197131	17	1.9	17	88	11	52	65	0	2	31	1.07
18201187--18201224	20	1.9	20	88	0	58	68	0	7	23	1.16
18201772--18201804	17	1.9	17	93	0	57	75	6	9	9	1.18
18212506--18212543	17	2.2	17	90	0	58	13	13	13	60	1.59
18238241--18238392	76	2.0	76	93	0	259	22	21	15	40	1.91
18242947--18242992	13	3.4	13	88	8	65	52	2	4	41	1.33
18244126--18244159	17	2.0	17	88	0	50	50	2	14	32	1.58
18250585--18250618	17	2.0	17	88	0	50	50	2	14	32	1.58
18255167--18255201	17	2.1	17	89	5	54	54	5	8	31	1.54
18260796--18260834	21	1.9	20	84	5	51	38	20	12	28	1.89
18261600--18261698	19	5.2	19	83	0	117	26	27	17	29	1.97
18263206--18263291	43	2.0	43	93	0	145	39	5	15	39	1.71
18265075--18265114	20	2.0	20	90	0	62	32	2	5	60	1.32
18267001--18267217	110	2.0	109	85	0	290	31	13	16	38	1.87
18273305--18273903	45	13.1	45	84	4	664	33	25	15	25	1.95
18273305--18273904	91	6.6	90	82	4	682	33	25	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18274332--18274377	17	2.8	16	80	9	56	76	10	0	13	1.03
18276795--18276844	25	2.0	25	88	7	75	56	0	2	42	1.11
18291238--18291284	23	2.0	23	95	0	85	12	10	12	63	1.52
18303204--18303282	13	5.9	13	73	7	61	27	34	13	24	1.93
18303204--18303282	40	2.0	40	85	9	108	27	34	13	24	1.93
18306219--18306979	105	7.2	104	76	4	625	32	12	23	31	1.92
18306239--18306976	315	2.3	314	81	4	790	32	12	23	31	1.92
18308101--18308157	24	2.4	24	84	0	69	49	10	5	35	1.60
18308176--18308246	35	2.0	35	91	0	115	30	15	9	43	1.79
18326748--18326803	25	2.2	25	87	0	76	35	7	28	28	1.84
18327874--18327924	21	2.5	20	78	12	59	70	1	1	25	1.08
18327890--18327930	21	1.9	22	90	5	66	70	2	4	21	1.18
18339586--18339621	18	2.0	18	94	0	63	69	13	0	16	1.19
18356176--18356210	18	2.0	17	88	5	52	68	8	2	20	1.29
18358813--18358858	14	3.3	14	77	16	51	41	0	2	56	1.11
18365855--18365890	13	2.8	13	95	0	63	13	25	19	41	1.88
18370226--18371308	49	22.1	49	79	4	882	22	26	15	35	1.94
18372275--18372320	7	6.6	7	85	7	58	0	19	0	80	0.71
18372261--18372329	27	2.4	29	83	11	88	1	21	0	76	0.86
18376855--18376881	2	13.5	2	100	0	54	51	0	0	48	1.00
18379959--18380005	16	2.9	16	84	6	60	8	29	0	61	1.25
18381371--18381400	15	2.1	15	93	6	53	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18382988--18383024	19	2.0	19	89	5	58	37	0	8	54	1.30
18382995--18383035	19	2.2	19	86	0	55	36	0	9	53	1.34
18388593--18388649	27	2.0	29	86	6	82	38	31	3	26	1.73
18390045--18390162	11	10.5	11	73	10	69	41	1	3	53	1.28
18390045--18390160	17	6.5	17	75	14	108	40	1	3	54	1.27
18390045--18390162	23	5.2	23	71	14	77	41	1	3	53	1.28
18390045--18390160	57	2.0	57	88	0	169	40	1	3	54	1.27
18391871--18392109	30	8.1	30	74	10	161	35	25	5	33	1.79
18391871--18392061	59	3.2	59	81	5	183	34	24	5	35	1.79
18391969--18392089	59	2.1	58	84	7	156	28	26	8	36	1.85
18392375--18392571	97	2.0	98	87	2	281	28	17	16	37	1.92
18403932--18404004	23	3.1	23	90	4	101	45	23	17	13	1.84
18403922--18404025	23	4.4	25	82	9	87	46	21	20	12	1.83
18405682--18406617	209	4.5	209	87	2	1250	36	19	22	21	1.95
18406430--18406501	37	1.9	37	91	0	117	36	19	23	20	1.95
18406932--18407018	11	7.7	11	71	12	52	37	0	4	57	1.19
18406933--18407042	17	6.5	17	82	3	141	40	0	3	54	1.24
18406961--18407010	23	2.2	22	86	13	66	38	0	6	56	1.24
18406933--18407042	51	2.2	51	88	0	157	40	0	3	54	1.24
18408775--18409152	30	12.7	30	80	4	331	37	24	2	35	1.68
18408770--18409096	90	3.6	88	84	5	413	38	24	1	35	1.66
18409034--18409184	29	5.1	30	77	10	109	31	25	4	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18409098--18409213	60	1.9	60	84	6	155	31	25	6	37	1.82
18409505--18409696	97	2.0	98	89	3	298	28	16	17	38	1.91
18414527--18414569	21	2.1	21	86	4	61	32	23	11	32	1.90
18417463--18417502	14	2.7	16	81	11	50	62	0	0	37	0.95
18417606--18417668	28	2.3	27	91	2	99	50	4	19	25	1.66
18445730--18445803	21	3.4	21	80	10	78	8	14	0	77	0.99
18445739--18445793	11	5.3	10	77	14	58	9	14	0	76	1.02
18445727--18445787	25	2.3	26	81	16	72	8	14	0	77	0.99
18445743--18445801	28	2.1	28	81	12	68	10	13	0	76	1.02
18447239--18447263	13	1.9	13	100	0	50	24	16	12	48	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163