genome.fa.s8.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  62  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15741756--15741872	29	3.9	29	75	14	112	36	3	27	32	1.74
15743603--15743664	6	11.0	6	73	13	51	53	3	1	41	1.27
15743603--15743666	17	3.8	17	83	2	85	53	3	1	42	1.26
15743603--15743666	34	1.9	33	96	3	119	53	3	1	42	1.26
15744078--15744535	39	11.8	39	70	10	231	25	20	31	23	1.98
15744117--15744376	117	2.2	117	86	0	349	25	23	31	20	1.98
15744234--15744495	78	3.4	78	80	3	294	24	22	31	22	1.98
15744268--15744535	78	3.4	78	81	2	288	23	20	30	25	1.98
15756676--15756736	28	2.1	29	81	6	70	40	8	21	29	1.82
15756690--15756745	29	2.0	29	85	3	78	35	5	23	35	1.78
15756739--15756833	30	3.2	30	84	11	108	34	3	23	38	1.71
15756741--15757091	29	11.9	30	75	13	177	34	3	26	36	1.72
15756721--15757091	87	4.2	85	74	14	247	34	3	25	36	1.73
15758831--15758915	6	15.0	6	78	11	90	55	2	0	42	1.12
15758831--15758892	17	3.7	17	91	2	99	54	1	0	43	1.09
15758866--15758909	11	3.9	11	79	5	52	56	2	0	40	1.11
15758864--15758915	23	2.3	23	89	0	77	53	3	0	42	1.19
15758831--15758914	17	5.0	17	88	1	98	54	2	0	42	1.13
15759039--15759445	41	9.9	41	81	4	462	34	15	27	22	1.94
15759040--15759445	123	3.3	123	84	2	519	34	15	27	21	1.94
15761099--15761242	30	4.8	29	82	5	128	38	4	20	36	1.72
15761099--15761242	60	2.4	60	82	4	157	38	4	20	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15761141--15761256	60	1.9	60	87	3	171	37	0	23	37	1.61
15761141--15761266	30	4.2	30	83	4	110	38	1	21	38	1.63
15761099--15761266	90	1.9	90	80	5	196	38	4	20	36	1.72
15762869--15763041	40	4.4	40	82	1	197	24	13	25	36	1.92
15763093--15763221	50	2.6	50	86	2	143	20	25	17	35	1.95
15763110--15763221	50	2.2	50	88	0	161	20	23	19	36	1.95
15771539--15771595	21	2.7	22	75	8	64	31	12	24	31	1.92
15776817--15776898	38	2.2	38	82	6	96	35	21	12	30	1.90
15787831--15788017	30	6.3	30	80	4	173	36	4	20	37	1.73
15787831--15788017	60	3.1	60	80	2	198	36	4	20	37	1.73
15789002--15789042	16	2.5	16	84	4	55	73	0	2	24	0.96
15789369--15789430	25	2.5	25	75	12	65	54	4	9	30	1.54
15798193--15798322	66	2.0	66	95	0	233	35	17	16	30	1.92
15800506--15800628	14	8.5	15	70	21	84	39	6	2	52	1.41
15800604--15800651	22	2.1	23	88	11	73	33	6	2	58	1.35
15805423--15805468	18	2.6	17	83	10	56	2	2	17	78	0.96
15805431--15805480	20	2.5	20	90	6	75	2	4	22	72	1.12
15810414--15810546	62	2.1	63	84	1	169	36	19	15	29	1.92
15810499--15810564	33	2.0	33	87	0	96	37	22	12	27	1.90
15813038--15813071	18	1.9	18	88	5	52	29	0	5	64	1.17
15814650--15814693	21	2.0	21	82	13	52	54	4	0	40	1.21
15817729--15817791	30	2.1	30	82	11	76	30	0	7	61	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15818032--15818095	22	2.8	22	78	4	65	54	0	3	42	1.16
15819285--15819311	3	9.0	3	100	0	54	33	66	0	0	0.92
15820786--15820816	6	5.2	6	100	0	62	32	0	67	0	0.91
15823840--15823876	18	2.1	18	89	0	56	43	5	13	37	1.67
15824677--15824880	99	2.1	99	92	0	336	25	30	18	25	1.98
15828430--15828473	22	2.0	22	82	8	54	77	6	9	6	1.13
15834222--15834470	20	12.1	20	81	6	266	14	19	30	35	1.91
15834299--15834388	46	2.0	46	88	4	137	17	16	30	35	1.93
15834279--15834410	66	2.0	66	89	0	201	16	17	31	34	1.92
15834222--15834430	86	2.5	86	82	9	236	14	19	31	34	1.92
15834241--15834451	106	2.0	106	84	1	280	14	19	31	34	1.92
15840826--15840888	20	3.2	20	93	0	108	12	22	30	34	1.91
15848697--15848808	24	4.8	24	81	11	110	78	3	0	17	0.89
15848696--15848805	18	6.2	17	80	13	109	78	3	0	18	0.90
15848697--15848794	6	16.3	6	83	11	121	79	4	0	16	0.88
15848854--15848887	3	11.3	3	100	0	68	67	0	0	32	0.91
15856193--15856344	64	2.4	64	86	4	200	30	25	19	24	1.98
15856298--15856368	24	3.0	24	89	0	106	30	23	21	23	1.99
15856454--15856641	42	4.5	41	79	4	205	39	14	14	31	1.86
15856450--15856641	84	2.3	85	86	2	280	39	14	15	31	1.86
15856961--15857026	24	2.6	25	78	7	62	40	4	10	43	1.59
15856952--15857026	25	2.9	25	76	7	62	37	4	12	46	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15857213--15857272	20	2.9	19	75	20	59	28	0	3	68	1.05
15857303--15857367	19	3.1	21	76	10	71	24	1	1	72	1.02
15857346--15857387	13	3.2	13	86	6	50	16	2	4	76	1.07
15857487--15857519	16	2.1	16	100	0	66	30	6	0	63	1.18
15857565--15857605	16	2.6	16	84	0	55	29	4	2	63	1.28
15857710--15857735	4	6.5	4	100	0	52	50	0	0	50	1.00
15868405--15868443	13	3.0	13	88	0	51	30	35	15	17	1.91
15868639--15868693	21	2.6	21	100	0	110	10	52	18	18	1.73
15868651--15868690	12	3.6	12	74	19	50	7	52	20	20	1.70
15882066--15882230	49	3.4	48	78	9	172	40	13	25	21	1.89
15882028--15882254	98	2.3	98	83	1	285	38	17	23	20	1.93
15882861--15882886	11	2.4	11	100	0	52	26	42	15	15	1.87
15888088--15888132	21	2.1	22	84	12	58	24	0	6	68	1.13
15888743--15888996	39	6.4	40	81	7	279	27	14	23	33	1.94
15889165--15889304	50	2.8	50	82	2	147	22	24	20	32	1.98
15889208--15889342	50	2.7	50	83	2	155	22	22	20	34	1.96
15898880--15898919	15	2.6	16	92	8	73	67	0	32	0	0.91
15899993--15900032	11	3.4	12	86	13	57	77	0	20	2	0.88
15906534--15906564	16	1.9	16	93	0	53	61	0	16	22	1.34
15907365--15907417	26	2.0	26	92	0	88	37	20	13	28	1.90
15909263--15909339	21	3.5	22	73	16	70	41	29	6	22	1.78
15910884--15910936	27	2.0	25	82	13	63	33	20	0	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15915647--15915706	21	2.9	21	79	0	57	31	20	15	33	1.93
15917391--15917443	27	2.0	25	82	13	63	33	20	0	45	1.52
15925963--15926034	31	2.4	31	90	2	119	45	18	15	20	1.85
15926537--15926716	63	2.7	67	84	10	271	44	0	3	51	1.19
15926778--15926803	9	2.9	9	100	0	52	46	34	11	7	1.69
15937259--15937283	12	2.1	12	100	0	50	16	28	24	32	1.96
15938019--15938150	50	2.6	50	75	2	131	37	15	21	24	1.93
15938312--15938868	79	7.0	79	82	4	577	32	23	17	27	1.97
15938326--15938868	40	13.7	40	78	5	505	32	23	17	26	1.97
15939440--15939478	16	2.4	16	82	0	51	25	35	12	25	1.92
15939513--15939683	63	2.7	63	91	0	279	45	0	5	49	1.24
15939664--15939705	13	3.3	12	84	15	50	66	9	0	23	1.21
15943435--15943511	21	3.5	22	73	16	61	42	25	7	23	1.81
15947241--15947297	30	1.9	30	96	0	105	31	3	24	40	1.72
15948297--15948341	21	2.1	22	84	12	58	24	0	6	68	1.13
15948340--15948384	18	2.4	18	89	10	65	75	0	4	20	0.97
15948804--15948860	23	2.5	23	76	0	69	35	10	14	40	1.80
15948981--15949014	4	8.0	4	87	12	50	29	0	0	70	0.87
15948981--15949012	9	3.7	9	95	4	57	31	0	0	68	0.90
15949689--15949989	60	5.0	59	78	6	286	32	24	21	21	1.98
15957277--15957344	23	2.9	23	69	8	57	23	17	17	41	1.90
15960102--15960152	26	2.0	26	88	7	77	41	13	15	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15960104--15960159	26	2.2	26	83	6	69	48	10	14	26	1.76
15965095--15965261	79	2.1	79	85	2	228	29	26	20	22	1.99
15969429--15969482	21	2.5	22	82	11	69	33	25	11	29	1.91
16004716--16004742	7	3.9	7	100	0	54	11	29	0	59	1.32
16016608--16016649	17	2.4	18	88	4	59	57	14	11	16	1.66
16016608--16016661	18	3.1	18	86	2	65	57	14	11	16	1.65
16032540--16032910	77	4.8	77	89	2	535	33	25	16	25	1.96
16033062--16033090	14	2.0	15	93	6	51	68	13	0	17	1.20
16034512--16034682	30	5.7	29	75	15	145	36	18	1	42	1.61
16034512--16034681	60	2.8	59	80	8	182	36	18	1	42	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163