genome.fa.s8.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  151  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41520750--41521604	426	2.0	426	99	0	1692	40	8	15	35	1.77
41528589--41528626	16	2.4	17	87	12	55	50	0	0	50	1.00
41534150--41534241	45	2.0	45	100	0	184	38	6	13	42	1.70
41536624--41536757	23	5.8	22	79	10	108	11	23	20	44	1.85
41536625--41536773	69	2.2	69	85	9	198	12	22	20	44	1.84
41536645--41536769	23	5.4	23	79	12	123	12	21	21	44	1.84
41544366--41544441	38	2.0	37	82	7	91	42	6	1	50	1.37
41554580--41554774	9	21.0	9	69	18	80	61	2	2	34	1.21
41554592--41554665	27	2.8	27	82	10	89	64	1	0	33	1.02
41554592--41554785	19	10.4	19	70	15	86	63	2	2	31	1.19
41554615--41554718	29	3.8	27	77	17	90	66	1	0	30	1.09
41554601--41554755	10	16.9	9	69	15	79	63	1	1	32	1.16
41555237--41555305	21	3.3	22	75	17	67	37	0	5	56	1.23
41555368--41555401	14	2.4	15	90	9	54	26	0	0	73	0.83
41559862--41559894	17	1.9	17	88	11	50	54	0	0	45	0.99
41574540--41574587	22	2.1	22	88	3	69	45	2	4	47	1.33
41575969--41575998	2	15.0	2	92	0	51	0	46	0	53	1.00
41584993--41585036	18	2.4	19	80	3	54	15	22	0	61	1.34
41589354--41589388	18	2.0	18	94	5	63	48	0	0	51	1.00
41592298--41592327	12	2.5	12	88	0	51	80	0	0	20	0.72
41593529--41593558	14	2.1	14	93	0	51	56	23	0	20	1.42
41593577--41593645	28	2.5	28	83	4	77	28	1	26	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41593599--41593687	28	3.2	28	81	9	87	26	1	24	47	1.59
41594488--41594562	37	2.0	37	100	0	150	32	16	10	41	1.82
41594687--41594734	7	6.7	7	88	4	51	54	35	0	10	1.35
41594688--41594727	14	2.8	14	88	3	62	57	37	0	5	1.21
41596959--41596997	16	2.4	17	87	8	55	53	5	5	35	1.45
41600993--41601137	72	2.0	72	95	0	263	34	12	8	44	1.74
41610108--41610455	173	2.0	173	97	0	660	33	18	22	26	1.97
41611974--41612108	49	2.8	49	86	2	182	42	17	22	17	1.89
41612035--41612341	98	3.2	97	79	10	371	40	17	23	18	1.91
41612234--41612496	133	2.0	133	86	4	370	37	19	23	18	1.94
41621451--41621505	28	1.9	29	81	3	67	43	1	0	54	1.10
41626065--41626103	20	1.9	21	89	5	62	23	7	0	69	1.14
41635064--41635104	18	2.3	18	91	8	66	58	0	0	41	0.98
41635053--41635101	18	3.1	15	78	21	55	59	0	2	38	1.09
41638964--41638993	2	15.0	2	100	0	60	50	0	0	50	1.00
41657957--41658019	27	2.3	27	94	0	108	15	31	33	19	1.93
41657958--41658038	27	3.0	27	85	3	101	18	30	29	20	1.97
41658147--41658187	20	1.9	23	85	14	61	60	0	7	31	1.24
41658192--41658322	57	2.4	55	78	10	142	56	5	2	35	1.35
41658496--41658553	26	2.2	26	84	0	71	55	5	29	10	1.55
41658644--41658702	26	2.3	26	78	0	64	35	1	5	57	1.31
41658659--41658708	26	1.9	26	83	0	64	32	0	10	58	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41658774--41658820	6	7.8	6	86	9	69	65	14	2	17	1.36
41659253--41659277	6	4.2	6	100	0	50	16	32	36	16	1.90
41661247--41661278	16	2.1	16	94	5	57	59	0	0	40	0.97
41662993--41663018	12	2.2	12	100	0	52	69	0	0	30	0.89
41663002--41663050	21	2.3	21	85	0	62	67	6	2	24	1.24
41663344--41663396	22	2.7	18	71	20	52	54	15	9	20	1.68
41665343--41665385	20	2.1	21	87	8	63	74	0	0	25	0.82
41665343--41665395	20	2.7	21	80	11	58	71	0	1	26	0.96
41666838--41666938	30	3.4	30	85	5	118	39	2	20	36	1.68
41669620--41669698	17	4.6	17	80	1	86	56	7	1	34	1.35
41674531--41674573	20	2.1	20	86	4	59	39	4	4	51	1.44
41674518--41674678	58	2.6	63	78	14	167	39	3	8	49	1.50
41682170--41682204	17	1.9	19	88	11	56	31	5	5	57	1.46
41685078--41685157	39	2.0	40	92	2	135	30	16	22	31	1.96
41692017--41692050	14	2.4	14	90	0	50	58	0	2	38	1.13
41693053--41693094	8	5.2	8	77	11	50	61	0	2	35	1.09
41693053--41693094	15	2.6	17	81	11	61	61	0	2	35	1.09
41694674--41694731	29	2.0	30	82	3	73	44	1	12	41	1.51
41698744--41698782	15	2.6	15	83	0	51	38	2	0	58	1.12
41701481--41701508	6	4.7	6	100	0	56	85	0	0	14	0.59
41701588--41701628	21	2.0	21	90	0	64	41	0	17	41	1.49
41701883--41701937	24	2.3	23	87	6	74	54	3	1	40	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41711811--41711911	38	2.6	40	71	10	100	21	19	28	29	1.98
41713224--41713292	23	3.0	23	83	8	70	11	20	24	43	1.85
41713259--41713322	23	2.8	23	79	9	69	10	21	25	42	1.85
41724209--41724276	32	2.3	29	82	12	77	47	2	5	44	1.42
41736827--41736852	8	3.2	8	100	0	52	50	0	0	50	1.00
41737841--41737869	3	9.7	3	100	0	58	0	34	34	31	1.58
41744579--41744608	15	2.0	15	93	0	51	56	6	3	33	1.42
41757420--41757460	20	2.0	20	95	0	73	56	14	7	21	1.63
41760060--41760089	10	3.0	10	100	0	60	90	0	0	10	0.47
41764179--41764219	21	2.0	21	90	0	64	48	0	0	51	1.00
41770221--41770279	3	18.7	3	79	10	64	32	3	32	32	1.74
41773425--41773458	17	2.0	17	88	0	50	38	20	8	32	1.84
41777256--41777294	19	2.1	18	85	4	51	61	5	0	33	1.18
41778431--41778483	18	3.0	17	76	15	54	47	0	1	50	1.12
41779135--41779184	15	3.2	15	75	10	55	46	0	2	52	1.12
41779207--41779246	14	2.8	15	78	21	50	47	0	0	52	1.00
41779203--41779248	13	3.4	14	85	8	60	52	0	0	47	1.00
41779361--41779392	13	2.4	14	85	15	50	43	0	0	56	0.99
41781192--41781235	22	2.0	23	81	4	54	38	25	2	34	1.68
41781320--41781429	55	2.0	55	92	0	184	44	11	4	39	1.62
41788589--41788695	53	2.0	54	92	1	180	44	10	5	39	1.62
41789424--41789461	18	2.1	18	85	9	51	50	13	10	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41792535--41792572	18	2.1	18	85	9	51	50	13	10	26	1.73
41801922--41801954	17	1.9	17	88	11	50	54	3	3	39	1.31
41804594--41804724	43	3.0	43	86	1	181	28	24	20	26	1.99
41805828--41806060	118	2.0	119	93	2	398	41	15	15	27	1.87
41807416--41807440	12	2.1	12	100	0	50	68	0	16	16	1.22
41807516--41807561	17	2.7	17	86	0	65	36	0	4	58	1.18
41808299--41808361	30	2.1	29	82	8	74	66	0	1	31	1.01
41812506--41812711	41	5.1	41	74	9	174	17	26	17	37	1.92
41817108--41817164	28	2.0	29	90	10	91	29	10	28	31	1.90
41817244--41817616	29	12.8	28	75	9	232	34	2	25	37	1.70
41817210--41817379	59	2.9	58	82	10	202	34	3	27	34	1.74
41817244--41817617	58	6.4	58	84	4	355	34	2	25	37	1.70
41817242--41817617	117	3.2	118	85	8	409	34	2	25	37	1.71
41817362--41817621	117	2.2	115	91	3	421	35	2	24	37	1.68
41819309--41819350	11	3.8	11	78	9	50	50	0	0	50	1.00
41819305--41819358	23	2.3	23	100	0	108	51	0	0	48	1.00
41819321--41819395	18	3.9	19	79	15	66	53	1	1	44	1.17
41819305--41819380	23	3.3	23	89	7	93	51	1	0	47	1.09
41819303--41819380	6	13.5	6	70	17	58	50	1	0	48	1.09
41820336--41820379	20	2.2	20	87	0	61	22	31	13	31	1.93
41822163--41822216	22	2.4	23	72	12	58	46	3	1	48	1.30
41835421--41835490	23	3.0	23	74	2	68	45	15	7	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41835596--41835639	12	3.7	12	76	11	54	54	15	11	18	1.70
41835596--41835648	24	2.2	24	96	0	97	50	15	11	22	1.75
41836095--41836135	21	2.0	20	85	4	55	31	4	14	48	1.65
41836428--41836486	29	2.0	30	90	3	93	54	15	1	28	1.51
41841757--41841785	2	14.5	2	100	0	58	51	0	48	0	1.00
41848423--41848456	17	2.0	17	94	0	59	50	0	0	50	1.00
41848652--41848722	30	2.4	30	80	13	85	39	2	0	57	1.13
41849038--41849122	44	1.9	44	85	0	116	41	15	12	30	1.85
41851279--41851380	29	3.5	29	75	21	115	32	2	28	36	1.72
41851252--41851399	30	5.1	27	74	19	113	35	2	29	32	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163