genome.fa.s8.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  158  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44620963--44620987	13	1.9	13	100	0	50	56	0	0	44	0.99
44623301--44623340	19	2.1	19	85	0	53	37	0	0	62	0.95
44626811--44626899	23	3.8	23	77	11	74	42	3	5	48	1.43
44626796--44626875	35	2.2	36	82	6	101	42	2	3	51	1.33
44626796--44626888	17	5.3	16	77	18	64	43	2	4	50	1.34
44626814--44626912	6	16.8	6	77	12	98	42	3	4	50	1.36
44628679--44628988	29	10.7	29	67	12	136	32	27	1	38	1.68
44628671--44629023	58	6.1	57	83	9	367	32	28	2	36	1.71
44628671--44629024	117	3.0	116	81	7	414	31	28	2	36	1.71
44630534--44630579	2	23.0	2	100	0	92	50	0	0	50	1.00
44643948--44644022	24	3.1	24	88	0	105	25	12	9	53	1.67
44643956--44644034	24	3.3	24	85	3	88	27	13	10	48	1.75
44647465--44647494	3	10.0	3	100	0	60	66	0	0	33	0.92
44650946--44650979	18	1.9	17	88	5	50	76	0	20	2	0.92
44653362--44653478	59	2.0	59	93	0	198	37	24	13	23	1.92
44659532--44659562	15	2.1	15	93	0	53	3	16	0	80	0.83
44665581--44665605	6	4.2	6	100	0	50	84	0	16	0	0.63
44669370--44669413	19	2.4	19	84	3	54	38	0	6	54	1.27
44679168--44679243	32	2.4	31	80	8	82	43	2	9	44	1.50
44679384--44679446	30	2.1	29	85	11	83	44	1	0	53	1.10
44685571--44685615	22	2.0	22	95	0	81	60	2	4	33	1.29
44686543--44686569	12	2.2	12	100	0	54	44	11	14	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44696492--44696813	162	2.0	162	91	0	527	36	13	19	29	1.91
44702968--44703259	52	5.6	52	85	1	397	27	14	23	35	1.93
44707528--44707552	3	8.3	3	100	0	50	36	32	0	32	1.58
44717292--44717324	12	2.7	13	86	13	52	75	0	0	24	0.80
44728612--44728639	2	14.0	2	100	0	56	50	0	0	50	1.00
44732599--44732663	29	2.2	29	84	10	80	61	0	1	36	1.05
44737337--44737361	7	3.6	7	100	0	50	44	0	0	56	0.99
44745642--44745730	30	3.0	30	86	1	126	51	6	3	38	1.45
44748123--44748303	83	2.2	82	84	4	222	53	10	6	29	1.59
44749338--44749371	3	11.3	3	93	0	59	67	0	0	32	0.91
44759490--44759528	14	2.7	14	88	4	51	43	2	0	53	1.14
44759604--44759636	17	2.0	17	88	5	50	63	0	15	21	1.30
44761154--44761200	24	2.0	24	82	0	58	48	21	8	21	1.76
44764170--44764205	18	2.0	18	88	0	54	52	0	13	33	1.41
44766458--44766525	30	2.2	31	89	5	102	57	2	7	32	1.41
44766636--44766708	31	2.4	30	84	6	101	45	2	8	43	1.48
44773236--44773308	31	2.4	31	88	4	103	32	8	15	43	1.76
44778627--44778706	30	2.6	28	79	16	72	56	2	5	36	1.35
44778628--44778690	32	2.1	29	82	14	74	50	3	4	41	1.39
44785738--44785775	14	2.7	14	100	0	76	28	21	21	28	1.98
44796306--44796358	19	2.8	18	76	15	54	39	0	5	54	1.24
44803227--44803375	23	6.4	23	73	14	110	14	22	20	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44819011--44819071	26	2.3	26	82	0	86	52	9	1	36	1.45
44819343--44819389	23	2.0	24	83	4	60	59	0	14	25	1.36
44822811--44822850	19	2.0	20	85	4	55	30	10	15	45	1.78
44835528--44835569	3	14.0	3	85	9	50	0	35	2	61	1.09
44843148--44843208	31	2.0	31	83	0	77	18	21	21	39	1.93
44847224--44847264	21	1.9	22	90	5	66	48	0	0	51	1.00
44849194--44849239	25	1.9	25	86	8	69	32	4	6	56	1.45
44850320--44850379	31	1.9	31	90	6	95	51	6	5	36	1.50
44855212--44855267	22	2.6	22	72	13	62	55	0	3	41	1.17
44860912--44861289	187	2.0	187	99	0	747	31	17	16	34	1.92
44865017--44865050	17	2.0	17	88	0	50	44	8	8	38	1.67
44889359--44889408	26	1.9	26	83	0	64	42	8	14	36	1.74
44889528--44889556	2	14.5	2	100	0	58	0	48	0	51	1.00
44889556--44889580	2	12.5	2	100	0	50	48	0	0	52	1.00
44896096--44896223	42	3.0	41	88	4	175	21	17	30	31	1.96
44896106--44896248	42	3.4	42	87	1	126	19	17	31	31	1.95
44901853--44901877	6	4.2	6	100	0	50	84	0	16	0	0.63
44906128--44906174	15	2.9	16	87	9	60	53	0	0	46	1.00
44911621--44911668	23	2.0	24	84	11	64	60	0	12	27	1.32
44915234--44915282	24	2.0	24	85	14	66	26	12	2	59	1.44
44915425--44915460	18	2.0	18	94	0	63	41	0	5	52	1.24
44916961--44916998	17	2.2	18	85	4	51	13	7	10	68	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44921212--44921268	27	2.3	27	85	11	77	47	0	1	50	1.11
44921212--44921268	13	4.5	13	75	14	57	47	0	1	50	1.11
44923327--44923415	45	2.0	45	90	0	142	49	14	14	21	1.79
44924007--44924117	57	1.9	57	92	0	186	36	18	15	29	1.91
44936520--44936559	15	2.7	15	92	0	62	40	2	55	2	1.27
44936519--44936575	21	2.8	21	78	5	64	38	1	57	1	1.19
44942675--44942706	3	10.7	3	100	0	64	31	0	0	68	0.90
44944127--44944161	6	5.8	6	93	0	52	20	42	17	20	1.89
44947550--44947580	5	6.2	5	100	0	62	19	0	22	58	1.40
44948991--44949047	25	2.4	24	82	8	71	45	3	1	49	1.29
44957260--44957297	2	19.0	2	100	0	76	0	0	50	50	1.00
44958812--44959651	210	4.0	210	90	1	1254	29	22	16	31	1.96
44978550--44978600	15	3.5	15	71	15	52	25	7	11	54	1.63
44979962--44980007	23	2.0	23	82	0	56	34	13	17	34	1.88
44980220--44980292	34	2.1	34	92	5	121	30	16	0	53	1.43
44982094--44982126	17	1.9	17	88	11	50	66	21	9	3	1.33
44992984--44993062	2	39.5	2	94	0	140	46	0	2	50	1.14
45004463--45004489	4	6.8	4	100	0	54	74	25	0	0	0.83
45017035--45017077	18	2.5	17	76	3	50	34	0	2	62	1.08
45018808--45019058	43	5.8	43	85	1	306	28	22	20	28	1.98
45018800--45019033	129	1.8	129	88	1	362	28	20	21	29	1.98
45019611--45019791	69	2.6	69	100	0	362	40	17	10	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45022700--45022890	41	4.7	41	79	1	186	23	26	17	32	1.96
45022700--45022914	41	5.3	41	77	1	164	22	25	17	34	1.96
45023975--45024024	14	3.5	14	80	2	55	46	14	2	38	1.56
45024499--45024533	14	2.5	14	90	0	61	60	0	2	37	1.12
45027148--45027187	17	2.4	17	91	0	62	22	2	7	67	1.28
45030940--45031363	64	6.6	64	72	13	298	14	14	25	45	1.83
45031097--45031357	127	2.1	127	87	4	375	14	15	24	45	1.83
45033924--45034035	56	2.0	55	87	5	163	20	27	1	50	1.59
45040315--45040352	8	4.9	8	83	6	51	63	0	0	36	0.95
45040983--45041025	20	2.2	20	91	4	70	55	2	2	39	1.25
45041176--45041221	2	23.0	2	100	0	92	50	0	0	50	1.00
45044143--45044170	3	9.3	3	100	0	56	67	0	0	32	0.91
45050919--45050946	2	14.0	2	100	0	56	50	0	0	50	1.00
45061990--45062573	212	2.7	212	88	3	859	36	19	13	29	1.91
45070411--45070451	17	2.4	17	100	0	82	31	0	19	48	1.49
45074264--45074336	30	2.4	29	84	10	94	46	2	4	46	1.36
45074278--45074360	31	2.7	30	85	10	98	44	3	3	48	1.37
45074264--45074360	31	3.2	29	83	12	90	46	3	4	46	1.37
45075251--45075293	18	2.4	18	80	7	52	44	2	2	51	1.27
45079599--45079642	17	2.6	18	78	7	56	77	0	2	20	0.88
45080068--45080119	15	3.3	15	82	10	59	48	0	1	50	1.12
45080073--45080119	17	2.9	17	87	6	62	46	0	2	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45081015--45081050	18	2.0	19	89	10	58	38	0	0	61	0.96
45082238--45082275	15	2.6	15	83	4	51	31	2	2	63	1.22
45083020--45083093	39	1.9	38	88	2	112	50	4	6	39	1.48
45083701--45083725	2	12.5	2	100	0	50	52	0	0	48	1.00
45084117--45084285	85	2.0	85	89	2	259	47	8	14	29	1.73
45090288--45090372	41	2.1	40	100	0	134	51	20	4	23	1.65
45090291--45090359	24	3.2	24	61	26	62	53	17	5	23	1.65
45090306--45090371	19	3.3	19	69	19	62	51	18	4	25	1.65
45100975--45101012	17	2.2	17	90	0	58	28	0	0	71	0.87
45101128--45101240	31	3.7	30	70	18	99	41	17	11	29	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163