genome.fa.s8.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  24  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6461022--6461048	14	1.9	14	100	0	54	37	11	0	51	1.37
6461102--6461146	14	3.2	14	87	0	72	46	20	6	26	1.75
6462282--6462316	17	2.1	17	94	0	61	11	22	25	40	1.88
6463086--6463462	59	6.4	59	87	4	501	32	28	3	36	1.73
6463176--6463458	30	9.5	30	67	26	113	32	26	3	37	1.73
6470930--6470991	29	2.1	30	87	6	90	41	1	14	41	1.55
6473915--6474222	171	1.8	169	79	8	360	40	14	11	32	1.83
6481881--6481922	15	2.8	15	85	0	66	28	26	14	30	1.95
6486761--6486831	30	2.4	28	79	9	79	38	5	16	39	1.73
6487590--6487740	80	1.9	80	87	5	225	24	32	19	23	1.97
6487585--6487753	80	2.1	81	80	11	204	24	31	20	23	1.98
6496665--6496708	3	14.7	3	95	0	79	65	0	2	31	1.05
6501351--6501407	22	2.5	23	88	5	80	70	5	0	24	1.08
6501350--6501505	22	7.6	19	72	20	79	65	3	0	30	1.15
6501397--6501505	19	5.6	19	69	23	66	63	3	0	32	1.18
6501350--6501441	23	4.2	21	74	13	62	66	4	0	29	1.11
6501375--6501505	22	6.6	20	72	21	89	64	3	0	30	1.16
6501432--6501507	9	8.1	10	71	17	56	67	2	1	28	1.12
6501375--6501507	39	3.3	40	78	10	114	65	3	0	30	1.15
6501432--6501499	9	7.3	9	74	9	57	66	1	1	30	1.10
6503314--6503338	12	2.1	12	100	0	50	52	0	40	8	1.31
6508572--6508609	2	19.0	2	100	0	76	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6514511--6514550	2	20.5	2	94	5	73	50	0	0	50	1.00
6515231--6515311	32	2.5	33	78	9	94	29	3	6	60	1.38
6516240--6516280	20	2.0	22	85	9	59	14	0	12	73	1.11
6518986--6519022	7	5.6	7	84	9	51	27	0	2	70	1.01
6522516--6522570	26	2.2	25	86	3	74	25	3	7	63	1.37
6523895--6523938	22	2.0	22	100	0	88	27	22	9	40	1.84
6533793--6533835	16	2.6	17	85	3	52	72	2	0	25	0.97
6548186--6548227	18	2.3	18	95	0	75	28	16	16	38	1.91
6548393--6548446	25	2.2	25	82	0	63	57	3	3	35	1.34
6550552--6550599	25	1.9	25	87	8	71	27	6	2	64	1.28
6558490--6558915	218	2.0	218	87	1	613	33	15	18	32	1.92
6561347--6561401	26	2.1	26	86	6	76	34	3	0	61	1.13
6561429--6561475	23	2.0	23	100	0	94	42	0	8	48	1.33
6561570--6561618	26	1.9	25	84	12	64	53	2	6	38	1.38
6561844--6561882	15	2.6	15	87	0	51	28	0	5	66	1.12
6578534--6578563	15	1.9	16	93	6	53	73	3	0	23	0.98
6581283--6581332	18	2.7	18	81	12	57	28	0	0	72	0.86
6581281--6581323	20	2.1	20	86	4	59	25	0	0	74	0.82
6581285--6581331	16	2.8	17	78	12	53	27	0	0	72	0.85
6581445--6581491	23	2.0	23	87	0	67	65	8	2	23	1.31
6590054--6590088	18	2.0	18	88	5	54	57	8	17	17	1.64
6591297--6591380	38	2.2	38	97	0	159	35	16	7	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6595460--6595488	2	14.5	2	100	0	58	51	0	48	0	1.00
6608227--6608417	97	2.0	97	83	8	246	38	14	16	30	1.88
6608889--6608914	3	8.7	3	100	0	52	34	0	0	65	0.93
6609504--6609543	19	2.1	19	85	0	53	22	7	20	50	1.73
6609545--6609615	17	4.2	17	77	0	79	52	4	4	39	1.41
6609555--6609621	34	2.0	34	90	0	107	55	7	4	32	1.48
6610181--6610304	39	3.2	39	73	4	124	26	23	26	23	2.00
6610101--6610304	78	2.6	78	86	0	255	27	22	26	23	1.99
6611362--6611413	9	5.8	8	79	20	50	1	11	1	84	0.78
6611357--6611412	18	3.0	18	82	10	67	1	16	1	80	0.88
6611363--6611413	20	2.7	19	87	6	68	1	11	1	84	0.79
6615898--6616072	96	1.8	97	87	3	264	40	14	17	28	1.88
6616361--6616616	29	8.6	29	71	15	159	35	1	26	36	1.66
6616357--6616625	30	9.1	30	77	14	233	33	1	28	36	1.67
6616357--6616620	59	4.5	61	80	14	279	34	1	27	36	1.66
6616459--6616650	30	6.5	27	73	17	120	32	1	28	38	1.64
6618395--6618465	17	4.2	17	75	0	70	52	4	5	38	1.45
6618405--6618471	34	2.0	34	87	0	98	55	7	5	31	1.52
6618691--6618758	19	3.6	19	81	0	73	25	10	29	35	1.89
6622237--6622273	15	2.4	16	82	13	51	54	5	13	27	1.61
6622894--6622943	24	2.1	24	100	0	100	32	16	16	36	1.90
6623122--6623147	13	2.0	13	100	0	52	76	23	0	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6627756--6627812	3	19.0	3	77	0	60	33	0	36	29	1.58
6627756--6627812	18	3.2	18	85	7	80	33	0	36	29	1.58
6627761--6627813	24	2.2	24	89	0	79	30	0	39	30	1.57
6630302--6630344	22	2.0	22	90	0	68	55	9	13	20	1.66
6631413--6631485	34	2.2	34	83	9	89	60	1	6	31	1.31
6633356--6633381	13	2.0	13	100	0	52	23	0	0	76	0.78
6633892--6633929	18	2.1	19	85	5	51	65	2	0	31	1.06
6635964--6636011	15	3.3	14	82	8	60	45	31	10	12	1.76
6636055--6636118	20	3.2	20	88	0	101	15	21	23	39	1.92
6636055--6636121	13	5.1	13	75	13	66	14	20	22	41	1.89
6636045--6636105	27	2.3	27	82	5	70	16	24	22	36	1.94
6637156--6637189	3	11.3	3	100	0	68	32	0	0	67	0.91
6639554--6639598	23	2.0	23	82	8	56	31	2	2	64	1.18
6641488--6641923	7	62.3	7	97	0	746	3	42	13	40	1.61
6647815--6647866	24	2.2	24	82	0	59	53	1	5	38	1.36
6647831--6647923	21	4.3	21	67	22	57	43	0	5	51	1.24
6649052--6649123	14	4.9	15	78	11	62	13	26	27	31	1.94
6649052--6649138	42	2.0	43	82	6	106	16	26	27	29	1.96
6649605--6649668	27	2.4	27	86	0	83	37	23	17	21	1.94
6650302--6650330	14	2.0	15	93	6	51	48	0	3	48	1.18
6650412--6650520	52	2.1	51	88	10	159	51	0	0	47	1.07
6655999--6656032	16	2.1	16	94	0	59	67	5	0	26	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6658499--6658577	40	2.0	40	82	5	97	32	5	17	44	1.71
6663196--6663285	35	2.6	35	81	0	99	41	20	12	26	1.87
6664483--6665022	221	2.4	220	99	0	1053	33	17	13	35	1.88
6669710--6669757	14	3.1	17	80	14	52	39	2	2	56	1.23
6669834--6669861	6	4.7	6	100	0	56	67	0	0	32	0.91
6679316--6679391	17	4.5	17	83	0	98	55	3	1	39	1.27
6684543--6684587	24	1.9	23	81	4	54	46	17	26	8	1.78
6693228--6693300	29	2.4	30	84	8	96	35	8	12	43	1.72
6693249--6693308	29	2.1	29	87	0	84	30	8	15	46	1.74
6694275--6694325	22	2.3	22	82	3	66	70	1	0	27	0.98
6699781--6699814	17	2.0	17	94	0	59	73	0	0	26	0.83
6699774--6699830	28	2.0	30	89	6	91	68	3	1	26	1.15
6699847--6699900	27	2.0	26	86	10	74	62	1	3	31	1.23
6699788--6699898	18	6.1	17	69	19	55	62	1	3	32	1.23
6699912--6699964	26	2.0	26	82	7	63	62	5	3	28	1.35
6700421--6700563	41	3.5	41	88	2	200	31	21	30	16	1.95
6700533--6700590	29	2.0	29	100	0	116	34	20	31	13	1.92
6700492--6700633	70	2.0	70	86	2	196	33	19	28	18	1.95
6700562--6700675	41	2.8	42	77	9	121	33	16	29	20	1.95
6700650--6700704	29	1.9	29	85	3	76	36	18	27	18	1.94
6700609--6700741	69	1.9	70	89	4	207	34	18	28	18	1.95
6700457--6700748	110	2.7	109	82	7	376	32	19	30	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6701762--6701805	2	22.0	2	95	0	79	50	2	0	47	1.13
6702871--6702990	41	2.9	41	86	0	168	25	20	30	22	1.98
6702835--6702990	82	1.9	81	86	3	224	26	19	29	24	1.98
6703066--6703109	15	2.9	15	93	0	70	31	25	2	40	1.68
6712220--6712274	26	2.1	26	93	0	92	34	20	9	36	1.84
6713605--6713644	17	2.5	16	84	11	55	55	2	15	27	1.53
6714779--6714862	6	14.5	6	75	7	84	57	1	0	41	1.06
6714779--6714858	17	4.6	17	84	6	90	58	1	0	40	1.06
6714781--6714861	23	3.5	23	81	6	110	59	1	0	39	1.05
6714779--6714862	29	2.9	29	85	3	107	57	1	0	41	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163