genome.fa.s8.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  138  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37330520--37330584	33	2.0	33	87	0	94	53	1	3	41	1.25
37331017--37331060	23	1.9	23	90	9	72	47	6	9	36	1.62
37334633--37334730	51	1.9	51	83	6	126	30	15	9	44	1.77
37343168--37343197	3	10.0	3	100	0	60	33	0	0	66	0.92
37349541--37349577	14	2.7	15	84	16	53	72	0	0	27	0.84
37349833--37349922	31	2.7	34	75	10	98	60	0	11	28	1.31
37349854--37349895	16	2.7	16	81	3	50	61	0	11	26	1.30
37358223--37358327	48	2.3	47	91	6	178	60	4	4	30	1.38
37361112--37361175	21	3.1	21	74	14	62	10	4	12	71	1.27
37361121--37361178	19	2.9	19	82	7	71	13	3	10	72	1.24
37361132--37361211	31	2.5	33	78	11	96	13	3	11	71	1.27
37361141--37361187	19	2.5	19	86	6	60	14	2	10	72	1.21
37361205--37361239	12	2.9	12	82	0	52	11	5	14	68	1.37
37361202--37361270	32	2.1	33	86	2	95	10	5	15	68	1.37
37370991--37371070	29	2.6	28	80	9	79	32	5	13	48	1.64
37377500--37377541	21	1.9	23	90	9	70	30	0	0	69	0.89
37377502--37377551	21	2.3	22	83	13	59	34	0	0	66	0.92
37377501--37377549	22	2.2	23	85	10	66	32	0	0	67	0.91
37377825--37377862	14	2.6	15	83	8	51	34	5	2	57	1.35
37401298--37401361	30	2.2	28	83	5	74	46	1	23	28	1.61
37410111--37410183	33	2.2	34	76	9	80	43	4	10	41	1.59
37410110--37410174	33	2.0	33	84	6	87	43	4	10	41	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37410345--37410387	16	2.6	17	86	13	63	55	0	0	44	0.99
37410345--37410396	18	3.0	18	89	10	74	55	0	0	44	0.99
37413525--37413573	22	2.5	18	77	22	62	40	4	20	34	1.71
37413533--37413578	22	2.1	22	100	0	92	45	4	17	32	1.68
37413729--37413761	6	5.5	6	92	0	57	48	0	30	21	1.50
37413865--37413967	37	2.7	38	72	6	91	23	19	26	31	1.98
37416887--37416912	13	2.0	13	100	0	52	46	15	15	23	1.83
37417855--37417915	30	2.0	30	100	0	122	26	19	21	32	1.97
37423646--37423687	3	14.0	3	94	0	75	2	33	0	64	1.07
37424399--37424443	18	2.5	18	88	0	63	37	8	8	44	1.67
37424404--37424445	18	2.3	18	91	0	66	38	9	9	42	1.70
37425458--37425504	13	3.5	13	75	13	51	61	0	6	31	1.21
37426865--37426936	16	4.5	16	83	0	99	40	5	26	27	1.78
37427106--37427251	58	2.5	55	83	13	177	50	0	2	46	1.20
37435262--37435303	21	2.0	22	85	4	59	21	7	7	64	1.43
37435447--37435576	65	2.0	64	96	1	242	38	3	13	44	1.60
37436771--37436814	14	3.1	14	77	6	52	68	11	0	20	1.20
37440086--37440143	28	2.1	28	83	6	73	32	0	15	51	1.44
37440135--37440184	26	1.9	26	87	0	73	30	0	12	58	1.34
37440250--37440290	6	6.8	6	83	10	57	65	14	2	17	1.37
37442947--37442978	16	1.9	17	93	6	57	28	18	0	53	1.45
37443224--37443257	17	2.0	17	94	0	59	52	2	0	44	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37443816--37443853	20	1.9	20	88	0	58	34	0	5	60	1.19
37446111--37446149	19	2.1	19	85	4	53	74	0	12	12	1.08
37447001--37447038	18	2.2	18	86	9	53	60	7	5	26	1.46
37472721--37472763	15	2.6	18	75	17	56	69	0	6	23	1.12
37473637--37473677	18	2.2	19	83	12	50	24	0	7	68	1.15
37476232--37476324	44	2.1	44	89	0	141	32	18	26	22	1.97
37476783--37476817	2	17.5	2	100	0	70	48	0	0	51	1.00
37477649--37477705	26	2.3	25	82	11	64	36	3	0	59	1.14
37481549--37481593	21	2.1	22	83	4	56	42	0	4	53	1.21
37482298--37482344	9	5.3	9	79	20	55	44	0	0	55	0.99
37482303--37482348	20	2.4	20	89	7	69	45	0	0	54	0.99
37489353--37489387	17	2.1	17	100	0	70	28	22	22	25	1.99
37492389--37492413	5	5.0	5	100	0	50	20	0	0	80	0.72
37493216--37493247	3	10.7	3	93	0	55	0	0	71	28	0.86
37493255--37493284	5	6.0	5	100	0	60	20	0	0	80	0.72
37498446--37498472	7	3.9	7	100	0	54	0	14	0	85	0.61
37505256--37505305	25	2.0	26	84	11	68	44	2	2	52	1.24
37508483--37508802	160	2.0	160	99	0	631	32	10	15	41	1.80
37525115--37525392	87	3.2	84	83	7	326	32	8	26	32	1.87
37525099--37525394	58	5.1	58	75	9	228	31	9	27	32	1.88
37525115--37525394	29	9.7	29	74	11	184	31	8	27	32	1.87
37525115--37525541	29	14.7	29	70	12	157	33	7	26	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37525349--37525539	58	3.3	58	78	12	210	36	4	23	35	1.74
37525423--37525568	30	4.9	30	80	5	129	33	5	26	34	1.79
37527245--37527380	17	8.3	16	77	16	129	55	0	2	42	1.12
37527245--37527380	6	23.8	6	73	18	103	55	0	2	42	1.12
37527264--37527364	28	3.6	28	90	4	141	57	0	1	40	1.10
37527279--37527380	28	3.4	28	77	15	114	55	0	1	42	1.11
37527264--37527364	11	8.9	11	75	11	80	57	0	1	40	1.10
37539223--37539275	19	2.8	19	83	11	65	43	1	0	54	1.11
37539241--37539284	19	2.4	19	80	3	54	45	0	0	54	0.99
37540254--37540319	22	3.0	22	71	8	62	40	4	22	31	1.74
37547704--37547746	15	3.0	13	81	18	50	32	2	2	62	1.20
37548307--37548398	22	4.1	22	88	6	116	46	19	26	7	1.76
37548317--37548412	23	4.2	20	74	20	66	50	19	22	7	1.73
37560302--37560356	2	28.0	2	96	3	103	49	0	0	50	1.00
37560526--37560629	37	2.7	38	76	5	93	32	27	18	21	1.96
37560713--37560761	23	2.1	24	81	11	57	28	22	0	48	1.50
37562463--37562546	42	2.0	42	83	0	105	29	26	15	28	1.96
37563576--37563600	12	2.1	12	100	0	50	40	0	24	36	1.55
37563746--37563849	6	18.0	6	72	18	78	41	1	1	54	1.22
37563758--37563849	17	5.7	16	83	11	116	41	2	1	55	1.19
37563746--37563849	11	9.0	11	72	15	68	41	1	1	54	1.22
37564819--37564868	23	2.2	22	80	13	57	66	0	30	4	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37565567--37565985	30	14.1	29	78	10	350	39	21	2	36	1.68
37565595--37566011	60	6.9	60	83	4	495	38	21	2	36	1.69
37565562--37565985	90	4.7	87	82	7	426	38	22	2	36	1.69
37577599--37578145	68	7.9	68	93	2	835	33	16	20	29	1.94
37578463--37578563	6	18.0	6	70	22	60	41	1	1	54	1.23
37578460--37578514	26	2.2	25	86	3	74	36	1	3	58	1.26
37578475--37578550	31	2.4	31	87	10	102	38	2	1	57	1.21
37578464--37578552	11	8.4	11	72	12	51	40	2	2	55	1.25
37580243--37580725	60	8.1	60	82	4	494	38	20	4	37	1.72
37580228--37580724	90	5.5	90	82	5	544	37	21	4	36	1.73
37580238--37580760	30	17.3	29	80	7	426	37	20	4	37	1.73
37580243--37580779	60	8.9	60	80	8	472	37	21	4	37	1.72
37585586--37585721	52	2.6	52	84	2	166	36	25	14	24	1.93
37592147--37592334	52	3.6	52	87	0	268	36	25	13	25	1.92
37597520--37597623	52	2.0	52	96	0	190	41	18	12	27	1.86
37598179--37598270	17	5.5	17	80	1	96	35	3	6	54	1.43
37598241--37598284	22	2.0	23	90	4	72	43	2	0	54	1.12
37598176--37598286	6	19.5	6	73	13	65	40	3	5	50	1.43
37598984--37599016	13	2.6	13	90	4	50	60	0	3	36	1.12
37598981--37599020	16	2.5	16	87	0	53	60	0	2	37	1.11
37600188--37600269	29	2.8	29	81	7	103	30	25	3	40	1.73
37600190--37600283	29	3.3	27	76	15	82	32	26	5	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37600189--37600374	58	3.2	58	76	11	148	34	25	3	35	1.74
37600223--37600502	87	3.2	86	78	12	268	36	26	5	32	1.78
37600223--37600499	29	9.5	28	73	15	154	36	26	5	32	1.78
37608353--37608653	152	2.0	152	88	2	444	37	19	18	24	1.94
37616964--37617019	26	2.2	26	90	0	85	42	10	30	16	1.82
37616971--37617026	26	2.2	26	100	0	112	39	14	26	19	1.90
37621338--37621455	15	7.9	15	65	17	50	47	1	1	49	1.21
37621337--37621446	58	1.9	58	87	10	163	47	0	1	50	1.18
37621620--37621687	16	4.2	16	82	0	82	29	20	2	47	1.65
37621620--37621687	32	2.1	32	86	0	91	29	20	2	47	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163