genome.fa.s8.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  51  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12699010--12699585	99	5.8	99	77	6	367	15	31	17	34	1.92
12698954--12699623	50	13.5	50	72	8	384	15	30	18	35	1.92
12699109--12699579	198	2.4	198	81	3	563	15	31	17	35	1.91
12708134--12708196	30	2.0	32	87	6	94	41	3	20	34	1.68
12708208--12708546	29	11.5	28	74	12	150	34	2	25	37	1.69
12708330--12708638	59	5.2	59	73	10	193	35	2	23	37	1.68
12708322--12708553	90	2.6	90	80	6	247	36	1	24	37	1.66
12708294--12708635	30	11.5	30	75	8	193	35	2	24	37	1.68
12711001--12711173	60	2.9	59	78	8	199	36	23	4	35	1.74
12711002--12711173	30	5.8	29	76	6	157	36	23	4	35	1.74
12711479--12711660	96	1.9	96	82	4	233	28	19	14	37	1.91
12715791--12715828	10	3.7	10	89	3	58	86	0	13	0	0.56
12715791--12715828	11	3.4	11	89	7	58	86	0	13	0	0.56
12716698--12716757	13	4.7	13	78	15	63	83	1	13	1	0.80
12716700--12716755	18	3.1	18	80	14	62	82	1	14	1	0.84
12717664--12717930	101	2.6	101	88	0	399	40	20	25	12	1.88
12717651--12718086	101	4.4	101	84	4	397	39	21	26	12	1.89
12717649--12718119	49	9.5	49	76	7	315	38	21	26	12	1.90
12717868--12718148	98	2.9	97	80	5	235	36	22	27	13	1.91
12718317--12718455	39	3.6	39	73	9	131	21	28	24	25	1.99
12718311--12718457	78	1.9	78	90	2	233	22	28	23	25	1.99
12718356--12718481	39	3.2	39	75	10	107	23	34	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12718311--12718496	78	2.4	78	82	7	209	23	29	22	24	1.99
12718563--12718964	205	2.0	206	88	1	610	35	19	23	22	1.96
12718882--12719040	49	3.5	49	63	24	121	33	18	25	22	1.97
12718847--12719050	86	2.4	86	94	0	345	35	18	23	22	1.96
12719636--12719682	17	2.8	17	77	6	51	29	2	12	55	1.49
12719677--12719710	18	1.9	18	88	5	52	47	2	2	47	1.32
12721344--12721417	29	2.5	30	80	12	98	36	18	5	39	1.74
12721344--12721452	30	3.7	29	80	4	94	34	22	3	39	1.72
12721344--12721455	59	1.9	58	81	5	136	35	22	3	38	1.72
12721481--12721560	28	2.8	29	71	19	76	36	27	1	35	1.65
12721441--12721560	58	2.1	59	91	1	197	32	30	2	35	1.71
12721465--12721564	30	3.4	30	71	15	100	33	29	3	35	1.73
12721464--12721584	58	2.1	58	86	7	165	33	25	3	37	1.73
12722571--12722626	28	2.0	28	89	3	85	23	8	0	67	1.18
12722607--12722640	11	3.2	10	91	8	50	14	0	0	85	0.60
12723621--12723684	17	3.8	17	87	0	83	59	3	1	35	1.23
12728318--12728391	21	3.5	21	81	0	85	31	28	12	28	1.93
12729095--12729439	52	6.6	52	81	6	363	36	23	14	25	1.93
12729239--12729359	58	2.1	58	93	0	206	38	24	14	23	1.92
12729095--12729382	160	1.8	154	84	4	387	36	24	13	25	1.92
12746826--12746852	14	1.9	14	100	0	54	0	14	0	85	0.61
12746836--12746899	29	2.2	28	78	13	67	20	12	6	60	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12753584--12753652	31	2.2	31	89	5	104	44	10	7	37	1.66
12755721--12755759	20	2.0	20	89	0	60	41	0	0	58	0.98
12770815--12770921	9	10.6	11	72	22	76	51	0	1	46	1.11
12770823--12770921	39	2.5	40	90	6	159	51	0	1	47	1.07
12770815--12770921	20	5.3	20	69	25	75	51	0	1	46	1.11
12771575--12771610	15	2.5	15	91	8	58	30	0	69	0	0.89
12771575--12771610	7	5.1	7	90	9	56	30	0	69	0	0.89
12771636--12771722	9	10.8	9	65	30	54	49	0	0	50	1.00
12771659--12771690	11	3.1	11	86	13	50	53	0	0	46	1.00
12771636--12771722	40	2.2	39	91	8	140	49	0	0	50	1.00
12772602--12772635	9	3.9	9	88	7	52	0	26	0	73	0.83
12772512--12772758	85	3.0	82	91	5	401	20	21	10	47	1.80
12772611--12772758	79	1.9	76	91	4	242	21	22	10	45	1.81
12776495--12776538	17	2.8	16	82	6	54	68	2	0	29	1.02
12777543--12777581	19	2.1	18	90	9	60	30	0	2	66	1.05
12777546--12777588	19	2.3	19	80	11	52	30	0	4	65	1.13
12779263--12779289	14	1.9	14	100	0	54	66	0	0	33	0.92
12780557--12780589	15	2.1	16	88	5	50	15	3	30	51	1.58
12783530--12783581	26	2.0	26	100	0	104	61	19	0	19	1.35
12790533--12790571	21	1.9	20	84	5	51	48	23	7	20	1.75
12798023--12798067	24	1.9	23	86	4	63	46	2	0	51	1.13
12798023--12798078	24	2.4	23	80	8	60	50	1	0	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12799830--12800012	72	2.5	71	91	2	303	56	15	4	23	1.59
12805533--12805774	30	8.1	32	72	13	198	37	19	4	38	1.72
12805533--12805790	60	4.3	60	78	10	235	37	20	4	37	1.72
12808993--12809051	29	2.0	29	93	0	100	52	6	25	15	1.67
12814321--12814886	99	5.7	99	82	4	572	33	16	32	16	1.92
12814321--12814886	148	3.8	149	81	2	602	33	16	32	16	1.92
12814321--12814886	49	11.4	49	79	3	524	33	16	32	16	1.92
12817084--12817285	30	6.8	30	82	8	189	39	21	3	36	1.70
12817084--12817373	59	4.9	58	73	9	185	38	19	4	37	1.71
12817084--12817373	89	3.3	88	75	4	217	38	19	4	37	1.71
12817101--12817432	30	11.2	29	73	7	159	38	20	3	36	1.71
12819897--12819952	20	2.8	19	79	17	60	55	7	1	35	1.38
12819920--12819957	19	2.1	18	85	14	51	57	5	0	36	1.21
12819967--12820021	10	5.4	10	76	20	51	69	1	1	27	1.09
12819968--12820014	19	2.4	19	86	10	60	70	0	2	27	0.99
12819967--12820005	10	3.6	11	86	13	55	71	0	2	25	0.98
12820105--12820135	16	1.9	16	93	0	53	35	6	9	48	1.62
12827556--12827613	30	1.9	30	92	0	98	56	15	5	22	1.58
12827639--12827665	14	1.9	14	100	0	54	51	14	11	22	1.73
12829377--12829418	18	2.4	17	84	4	57	40	2	0	57	1.12
12829503--12829540	13	2.9	14	84	7	53	55	0	0	44	0.99
12829603--12829639	19	1.9	19	100	0	74	45	5	16	32	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12831536--12831770	52	4.5	52	88	1	337	34	25	15	24	1.94
12836399--12836638	52	4.6	52	88	4	340	33	24	17	24	1.96
12836399--12836638	105	2.3	104	87	2	347	33	24	17	24	1.96
12840327--12840377	24	2.1	24	92	0	84	47	7	25	19	1.76
12841463--12842201	371	2.0	372	93	0	1273	31	15	21	30	1.95
12850084--12850123	21	1.9	21	84	0	53	35	2	10	52	1.48
12855352--12855395	2	22.0	2	100	0	88	50	0	0	50	1.00
12855671--12855725	26	2.1	26	82	0	65	25	29	0	45	1.54
12856186--12856457	145	1.9	145	82	3	341	37	23	15	24	1.93
12857739--12857819	27	3.0	27	77	16	89	46	1	1	50	1.17
12862184--12862261	42	1.9	39	85	12	104	28	6	7	57	1.51
12864274--12864301	6	4.7	6	100	0	56	50	0	50	0	1.00
12866980--12869936	701	4.2	694	80	5	2884	27	16	14	42	1.87
12866980--12869563	701	3.7	695	82	4	2916	27	15	14	42	1.86
12869522--12869594	38	1.9	38	85	0	101	10	27	2	58	1.45
12871036--12871219	42	4.4	42	81	4	219	34	12	25	27	1.92
12871200--12871294	41	2.3	41	80	7	104	41	7	22	29	1.81
12875162--12875265	37	2.7	38	74	5	93	32	27	18	21	1.96
12875335--12875380	23	2.0	23	82	4	56	34	13	6	45	1.69
12875391--12875431	12	3.2	13	77	22	50	60	2	0	36	1.10
12875394--12875432	18	2.2	18	86	9	53	64	2	0	33	1.08
12880909--12880961	21	2.5	21	84	0	70	26	13	26	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12894277--12894327	24	2.2	23	82	10	59	47	7	13	31	1.72
12895810--12895912	51	2.0	51	94	0	179	27	33	18	21	1.96
12897423--12897662	61	4.0	60	89	2	338	29	21	13	35	1.92
12903826--12903872	24	2.0	24	83	8	60	44	8	14	31	1.76
12906771--12906817	17	2.8	16	81	18	51	31	0	0	68	0.90
12906767--12906810	18	2.5	17	82	13	54	34	0	0	65	0.93
12906776--12906839	22	2.8	23	79	6	69	34	0	0	65	0.93
12919916--12920109	29	6.5	28	71	19	110	26	14	10	47	1.77
12919916--12920106	60	3.2	61	85	4	246	25	15	10	48	1.77
12920256--12920388	31	4.4	31	68	17	91	48	13	15	22	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163