genome.fa.s8.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  154  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42853072--42853102	15	2.0	16	93	6	55	41	0	25	32	1.56
42853416--42853618	113	1.8	113	88	4	313	41	4	7	46	1.52
42859027--42859071	22	2.0	23	82	4	56	37	2	0	60	1.09
42859692--42859729	20	1.9	20	84	10	51	28	26	7	36	1.84
42862954--42863002	21	2.2	24	89	10	77	46	18	4	30	1.67
42863947--42863988	11	3.9	11	87	3	59	40	0	2	57	1.12
42863949--42864010	17	3.8	17	80	6	74	40	0	3	56	1.15
42863955--42864007	27	2.0	27	84	0	70	37	0	3	58	1.16
42865988--42866088	29	3.5	30	77	21	124	32	32	2	31	1.73
42865977--42866088	58	1.9	58	98	0	215	31	33	3	31	1.75
42879240--42879298	29	2.0	30	83	3	75	49	13	5	32	1.64
42883089--42883128	21	1.9	21	89	0	62	10	57	15	17	1.64
42883281--42883324	6	7.3	6	84	0	52	13	70	2	13	1.26
42884792--42884830	20	2.0	20	85	10	53	23	5	2	69	1.21
42884847--42884917	21	3.6	20	79	7	74	46	4	1	47	1.30
42887426--42887480	16	3.5	15	77	18	51	65	0	1	32	1.03
42894228--42894262	18	1.9	18	88	0	52	45	0	0	54	0.99
42894224--42894267	21	2.2	20	87	4	61	50	0	0	50	1.00
42894777--42894832	26	2.2	25	78	9	60	37	1	7	53	1.39
42896684--42897079	185	2.1	190	83	7	500	27	23	5	43	1.75
42919940--42920005	28	2.4	28	87	7	91	27	19	16	36	1.93
42923895--42923950	22	2.5	22	88	2	85	44	25	19	10	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42960022--42960062	17	2.4	18	80	12	50	24	4	14	56	1.58
42965044--42965277	118	2.0	118	95	0	423	30	20	19	30	1.97
42985143--42985181	20	2.0	20	89	0	60	53	0	0	46	1.00
42989365--42989399	15	2.4	15	90	4	54	17	0	82	0	0.66
42989365--42989399	17	2.0	17	88	5	52	17	0	82	0	0.66
42993004--42993046	10	4.3	10	85	11	61	60	0	0	39	0.97
42992969--42993038	33	2.1	35	83	5	90	52	2	0	44	1.15
42993004--42993043	19	2.1	19	90	4	62	62	0	0	37	0.95
42993007--42993050	19	2.3	19	84	7	54	65	0	0	34	0.93
42993273--42993401	67	1.9	68	88	1	197	36	10	14	37	1.82
43005522--43005605	12	7.3	12	73	8	59	69	21	3	5	1.26
43005508--43005605	44	2.2	44	83	3	117	68	21	3	7	1.28
43005522--43005585	23	2.7	24	80	2	76	68	21	3	6	1.26
43005644--43005683	17	2.2	17	86	8	53	72	15	7	5	1.24
43005655--43005696	17	2.4	17	88	4	57	71	16	4	7	1.26
43031271--43031331	32	1.9	32	86	3	88	36	9	6	47	1.63
43044707--43044746	21	1.9	21	84	0	53	35	7	0	57	1.27
43044976--43045009	6	5.7	6	96	0	59	20	0	26	52	1.46
43049514--43049547	17	2.0	17	94	0	59	47	5	8	38	1.59
43050713--43050896	51	3.6	51	91	2	280	29	22	15	32	1.94
43057122--43057266	70	2.1	69	89	2	227	35	7	5	51	1.54
43059872--43059905	16	2.1	17	94	5	61	41	0	23	35	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43060056--43060100	24	1.9	24	81	4	56	37	6	8	46	1.61
43069474--43069520	20	2.3	20	100	0	94	19	12	14	53	1.73
43087531--43087588	30	1.9	30	89	0	89	48	13	6	31	1.69
43094235--43094428	97	2.0	97	86	2	273	39	15	17	27	1.90
43094736--43094876	29	4.8	29	79	5	149	35	4	27	31	1.78
43094712--43095024	88	3.6	88	78	7	271	35	4	27	32	1.76
43094736--43095018	59	4.8	60	79	8	246	33	4	28	32	1.78
43094684--43095022	30	11.6	29	75	10	210	34	3	28	33	1.75
43094971--43095047	30	2.6	30	78	0	82	36	2	27	33	1.71
43096162--43096215	4	12.8	4	77	11	54	35	0	0	64	0.94
43096160--43096220	22	2.9	21	86	11	81	37	0	0	62	0.96
43096162--43096215	13	4.2	13	77	15	51	35	0	0	64	0.94
43096830--43096940	6	19.3	6	72	12	81	55	3	0	39	1.23
43096830--43096940	17	6.5	17	87	2	150	55	3	0	39	1.23
43102106--43102138	12	2.6	13	90	9	59	18	18	0	63	1.31
43102229--43102308	23	3.5	23	96	1	144	36	30	21	12	1.90
43102225--43102332	45	2.4	46	80	10	141	39	26	22	11	1.87
43109444--43109499	22	2.5	23	79	2	60	39	26	21	12	1.89
43110407--43110472	33	1.9	36	84	9	93	9	27	6	57	1.53
43110474--43110575	48	2.1	48	98	0	195	46	13	5	34	1.68
43115668--43115694	14	1.9	14	100	0	54	22	11	29	37	1.89
43119189--43119227	17	2.3	17	90	0	60	15	12	25	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43123941--43123971	15	2.1	14	94	5	53	61	0	0	38	0.96
43123941--43123971	7	4.3	7	92	8	53	61	0	0	38	0.96
43124397--43124421	13	1.9	13	100	0	50	44	0	0	56	0.99
43135888--43135922	17	2.0	18	88	5	54	71	2	0	25	1.00
43136317--43136369	21	2.4	21	76	20	54	47	0	5	47	1.26
43138275--43138350	31	2.4	30	82	12	82	48	1	1	48	1.18
43140420--43140467	20	2.4	18	78	18	51	52	0	0	47	1.00
43140429--43140501	29	2.4	31	93	4	123	52	0	0	47	1.00
43141479--43141526	26	1.9	24	83	8	60	64	2	14	18	1.38
43141556--43141632	29	2.7	27	88	9	86	48	0	0	51	1.00
43141580--43141630	13	3.7	13	75	14	57	52	0	0	47	1.00
43141558--43141625	29	2.4	28	90	7	109	48	0	0	51	1.00
43141565--43141632	29	2.3	30	95	5	122	47	0	0	52	1.00
43144541--43144584	2	22.0	2	100	0	88	0	50	0	50	1.00
43148361--43148436	38	2.0	38	100	0	152	23	26	15	34	1.95
43150839--43150868	3	10.3	3	92	7	53	63	0	36	0	0.95
43151483--43151518	15	2.5	14	82	8	54	8	8	2	80	0.99
43152996--43153044	26	1.9	25	91	4	80	63	0	0	36	0.95
43171360--43171415	27	2.1	27	86	6	78	8	14	33	42	1.77
43171372--43171415	18	2.4	18	84	0	61	6	15	34	43	1.74
43176008--43176057	13	3.8	13	83	0	55	38	18	4	40	1.69
43181205--43181315	23	4.8	23	79	8	127	16	18	21	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43181205--43181319	46	2.5	46	85	5	153	15	18	20	45	1.86
43182158--43182204	14	3.5	14	77	11	53	29	0	2	68	1.02
43182158--43182201	13	3.4	13	78	12	54	27	0	2	70	0.99
43183194--43183265	37	2.0	37	83	8	94	38	18	4	38	1.70
43183294--43183350	19	3.0	19	72	10	53	57	7	0	35	1.26
43183895--43184093	107	1.9	106	81	6	240	27	26	9	37	1.86
43190809--43190882	21	3.5	21	96	0	121	27	12	16	44	1.82
43190809--43190894	42	2.0	42	86	0	118	26	11	16	45	1.81
43192902--43192970	31	2.2	31	79	7	77	65	2	0	31	1.08
43194837--43194863	6	4.5	6	100	0	54	81	18	0	0	0.69
43196852--43196882	16	1.9	16	93	0	53	64	0	0	35	0.94
43206162--43206198	19	1.9	19	100	0	74	54	0	24	21	1.45
43206273--43206314	21	1.9	22	85	9	59	45	0	0	54	0.99
43217695--43217749	16	3.5	15	78	12	58	69	1	1	27	1.09
43217726--43217828	30	3.5	29	78	16	97	62	1	5	30	1.30
43217714--43217823	9	11.8	9	69	14	57	63	1	5	29	1.27
43217776--43217849	30	2.5	30	79	18	75	62	2	2	32	1.23
43218150--43218187	2	19.0	2	94	0	67	47	0	0	52	1.00
43218200--43218237	19	2.0	20	89	5	60	36	2	0	60	1.11
43218191--43218240	9	5.7	9	82	15	52	38	2	0	60	1.09
43222271--43222330	27	2.3	27	83	13	72	45	0	1	53	1.10
43225746--43225772	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43232221--43232269	24	2.1	23	82	17	57	57	0	4	38	1.18
43243318--43243352	3	11.3	3	87	6	52	65	0	2	31	1.07
43243321--43243352	16	2.0	16	93	0	55	65	0	3	31	1.08
43244691--43244728	15	2.5	15	91	4	58	0	10	0	89	0.49
43244691--43244730	18	2.2	18	91	8	64	0	10	0	90	0.47
43244687--43244730	11	3.9	11	88	11	63	0	11	0	88	0.51
43246077--43246116	18	2.2	18	100	0	80	45	30	5	20	1.72
43247171--43247210	19	2.0	20	85	4	55	47	7	0	45	1.31
43250804--43250858	18	3.1	18	69	10	58	47	12	0	40	1.42
43251319--43251356	19	2.1	18	90	5	58	36	0	0	63	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163