genome.fa.s8.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  18  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5118629--5118674	20	2.3	20	75	17	51	41	0	6	52	1.27
5142119--5142168	26	1.9	26	95	0	73	32	8	24	36	1.84
5144134--5144179	22	2.1	22	84	15	60	69	2	0	28	1.00
5155093--5155147	27	2.0	27	86	6	76	18	12	1	67	1.32
5158882--5158919	18	2.1	19	90	5	60	65	2	0	31	1.06
5158877--5158936	19	3.2	19	81	13	63	65	3	0	31	1.09
5159111--5159170	29	2.1	29	83	0	75	30	6	15	48	1.70
5159687--5159715	14	2.1	14	100	0	58	44	6	13	34	1.71
5160732--5160796	21	3.1	21	73	10	71	49	0	1	49	1.10
5160762--5160800	18	2.1	19	86	13	55	58	0	2	38	1.12
5167714--5167760	22	2.1	22	96	0	85	42	23	17	17	1.88
5168754--5168952	55	3.5	55	80	4	182	50	15	9	25	1.73
5170113--5170154	15	2.8	15	100	0	84	52	0	0	47	1.00
5173520--5173562	19	2.2	20	84	12	54	39	13	2	44	1.57
5173641--5173711	19	3.7	19	81	7	81	32	26	22	18	1.97
5177226--5177435	71	3.0	71	92	0	330	40	13	19	25	1.89
5177298--5177350	27	2.0	27	88	0	79	39	15	18	26	1.90
5181355--5181401	3	15.7	3	100	0	94	34	0	0	65	0.93
5186268--5186304	12	3.0	13	84	11	51	21	5	2	70	1.20
5190787--5191566	391	2.0	390	98	0	1524	37	6	24	32	1.81
5192922--5192994	23	3.2	22	84	3	83	13	23	26	36	1.92
5198870--5198915	23	2.0	23	100	0	92	21	8	21	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5203310--5203412	29	3.7	27	72	12	84	48	10	11	29	1.73
5203359--5203553	97	2.0	97	95	2	356	47	12	8	31	1.71
5205060--5205087	11	2.5	11	100	0	56	32	0	0	67	0.91
5205082--5205106	6	4.2	6	100	0	50	20	0	0	80	0.72
5207963--5207998	17	2.1	17	90	10	56	30	0	0	69	0.89
5209139--5209176	19	2.0	20	89	5	60	55	0	0	44	0.99
5212001--5212060	7	8.4	7	75	10	59	33	1	1	63	1.14
5211978--5212067	36	2.5	37	77	12	96	42	1	1	55	1.14
5211992--5212053	29	2.1	31	77	17	78	40	1	1	56	1.19
5212353--5212378	13	2.0	13	100	0	52	76	0	0	23	0.78
5212781--5212823	18	2.3	18	84	8	50	69	2	6	20	1.23
5222628--5222757	63	2.1	63	86	0	179	36	8	25	30	1.86
5224972--5225034	6	11.2	6	71	19	55	42	0	3	53	1.16
5224990--5225034	16	2.7	17	93	3	74	42	0	0	57	0.98
5224978--5225054	27	2.8	28	80	5	86	44	2	3	49	1.34
5224970--5225012	11	3.9	11	82	8	52	41	0	4	53	1.21
5225005--5225045	17	2.4	17	87	0	55	43	2	2	51	1.28
5225544--5225583	21	1.9	21	85	10	55	35	30	15	20	1.93
5226966--5227222	59	4.4	59	86	4	351	33	30	2	33	1.72
5226994--5227214	30	7.5	28	69	19	116	33	29	2	33	1.70
5233611--5233666	28	2.0	28	96	0	103	23	17	26	32	1.97
5247562--5247634	29	2.4	30	84	6	85	49	10	4	35	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5248749--5248833	42	2.0	42	93	0	143	45	11	1	41	1.48
5250344--5250387	22	2.0	21	83	12	54	25	22	4	47	1.70
5250853--5250913	17	3.5	16	73	13	50	47	3	1	47	1.28
5250847--5250912	36	1.9	35	84	9	91	51	3	1	43	1.26
5250852--5250902	17	3.1	17	77	11	52	49	3	1	45	1.32
5254467--5254701	52	4.5	52	90	0	362	35	22	14	27	1.93
5255243--5255278	18	2.1	16	90	10	54	30	16	0	52	1.44
5266884--5266919	13	2.8	13	100	0	72	52	13	0	33	1.41
5272974--5273040	28	2.4	28	76	14	75	41	4	0	53	1.21
5273539--5273604	31	2.1	31	82	0	78	37	13	4	43	1.65
5274894--5274953	2	30.5	2	93	3	104	46	1	0	51	1.10
5276912--5277130	102	2.1	102	99	0	429	44	19	5	30	1.74
5277241--5277538	41	7.3	41	87	1	393	34	20	29	15	1.93
5277603--5277640	15	2.5	15	91	0	58	36	26	0	36	1.57
5280855--5280900	18	2.6	18	96	0	83	26	13	26	34	1.92
5285187--5285288	38	2.9	34	73	11	105	46	12	1	39	1.53
5285295--5285319	8	3.1	8	100	0	50	40	0	0	60	0.97
5285239--5285506	68	3.7	68	71	17	227	47	8	0	44	1.34
5285313--5285403	34	2.7	34	85	0	128	47	9	0	42	1.37
5285446--5285483	8	4.5	8	87	12	58	36	0	0	63	0.95
5285445--5285482	18	2.1	18	100	0	76	39	0	0	60	0.97
5285381--5285779	66	5.5	68	68	25	226	46	7	0	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5285467--5285549	34	2.4	34	88	4	114	46	10	1	40	1.46
5285529--5285553	4	6.2	4	100	0	50	52	0	0	48	1.00
5285501--5285626	54	2.3	53	79	6	137	46	7	0	46	1.36
5285552--5285692	34	4.3	34	71	12	105	47	9	0	43	1.35
5285583--5285625	14	3.0	14	87	12	61	48	2	0	48	1.14
5285583--5285626	15	3.0	15	90	9	65	47	2	0	50	1.13
5285600--5285634	8	4.5	8	85	7	54	40	0	0	60	0.97
5285597--5285634	15	2.4	16	91	4	60	44	0	0	55	0.99
5285612--5285704	34	2.7	34	86	0	114	46	8	0	45	1.34
5285745--5285796	18	2.7	19	91	8	88	42	0	0	57	0.98
5285747--5285782	8	4.2	8	86	13	54	38	0	0	61	0.96
5291846--5292029	43	4.3	43	80	8	196	27	19	23	29	1.98
5292368--5292408	20	2.0	20	90	0	64	46	9	4	39	1.58
5293621--5293652	15	2.3	15	89	10	50	43	0	3	53	1.16
5299035--5299062	2	14.0	2	100	0	56	0	50	0	50	1.00
5302069--5302342	93	2.9	92	95	2	476	32	14	33	20	1.92
5302651--5302730	15	5.3	15	67	16	58	18	7	55	18	1.66
5302650--5302744	30	3.2	30	93	0	163	22	7	52	17	1.69
5302916--5303208	120	2.4	121	88	4	419	27	15	36	19	1.92
5303914--5304051	68	2.0	68	97	0	258	29	12	19	38	1.88
5305545--5305937	196	2.0	196	99	0	777	31	18	19	31	1.95
5306084--5306122	15	2.6	15	84	8	53	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5306262--5306291	15	1.9	16	93	6	53	66	10	3	20	1.35
5311104--5311142	15	2.5	16	83	4	53	66	10	5	17	1.39
5320134--5320743	305	2.0	305	99	0	1193	31	16	19	32	1.94
5321064--5321201	29	4.7	29	73	4	107	33	7	27	31	1.84
5321099--5321398	29	10.1	30	72	11	183	34	5	26	35	1.78
5321123--5321403	59	4.8	56	77	9	222	34	4	25	35	1.77
5321182--5321399	29	7.4	29	77	8	190	33	4	26	35	1.76
5325253--5325290	15	2.4	16	95	4	69	65	10	5	18	1.41
5328866--5329471	305	2.0	305	99	0	1194	31	16	19	32	1.94
5329827--5330126	29	10.1	30	72	11	183	34	5	25	35	1.78
5329851--5330131	59	4.8	56	77	9	222	34	4	25	35	1.77
5329792--5329959	29	5.7	30	72	10	96	35	7	25	32	1.83
5329798--5329964	89	1.9	89	82	6	212	36	7	23	32	1.82
5329910--5330127	29	7.4	29	77	8	190	33	4	26	35	1.76
5333973--5334010	15	2.4	16	95	4	69	65	10	5	18	1.41
5337581--5338190	305	2.0	305	99	0	1202	31	16	20	32	1.94
5338511--5338648	29	4.7	29	73	4	107	33	7	27	31	1.84
5338546--5338845	29	10.1	30	71	11	174	34	5	26	34	1.78
5338570--5338845	59	4.7	57	78	7	232	34	4	26	34	1.77
5338629--5338846	29	7.4	29	76	8	181	33	4	27	35	1.76
5342699--5342736	15	2.4	16	95	4	69	65	10	5	18	1.41
5349570--5349602	5	6.6	5	100	0	66	21	18	0	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5350322--5350354	6	5.5	6	100	0	66	66	0	0	33	0.92
5351776--5351855	29	2.7	30	77	9	76	37	6	27	28	1.81
5351776--5352012	30	8.0	29	69	23	129	37	3	27	31	1.75
5351810--5352017	59	3.5	59	85	5	273	36	2	28	32	1.70
5351815--5352017	29	7.0	28	70	17	121	36	2	28	32	1.70
5353776--5353818	13	3.1	15	74	19	56	16	16	25	41	1.88
5353840--5353922	11	7.5	11	71	12	55	49	1	1	48	1.16
5353870--5353922	17	3.1	16	86	5	61	52	1	1	43	1.23
5353882--5353922	17	2.3	18	91	4	66	53	0	2	43	1.13
5354278--5354770	200	2.5	200	89	0	707	22	22	18	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163