genome.fa.s8.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  49  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12116825--12116862	3	12.7	3	94	0	67	2	34	0	63	1.09
12118403--12118821	169	2.4	171	86	4	533	24	18	21	36	1.95
12119605--12119708	6	18.0	6	72	18	78	41	1	1	54	1.22
12119617--12119708	17	5.7	16	83	11	116	41	2	1	55	1.19
12119605--12119708	11	9.0	11	72	15	68	41	1	1	54	1.22
12121471--12121702	30	7.7	29	77	5	203	39	21	3	36	1.69
12121466--12121692	60	3.8	60	83	7	291	38	21	3	36	1.70
12121471--12121697	90	2.5	90	82	2	260	38	21	3	36	1.69
12132632--12132667	3	12.0	3	100	0	72	66	0	0	33	0.92
12133507--12134179	68	9.9	68	95	0	1166	33	14	21	30	1.93
12134573--12134653	28	2.9	28	76	12	85	37	2	2	58	1.25
12134579--12134662	6	15.0	6	72	18	65	41	2	2	53	1.27
12134591--12134651	17	3.6	17	74	14	54	39	3	1	55	1.26
12134579--12134662	11	7.5	11	71	17	57	41	2	2	53	1.27
12134625--12134662	16	2.3	17	90	4	60	47	2	0	50	1.15
12136426--12136601	30	5.9	29	81	4	181	37	23	4	34	1.75
12136575--12136769	59	3.3	56	74	8	167	28	29	5	36	1.79
12137729--12137817	12	7.4	12	80	0	97	67	17	6	7	1.38
12137734--12137817	36	2.3	36	93	0	141	69	15	7	8	1.36
12137778--12137834	24	2.3	25	85	14	75	71	14	5	8	1.27
12137757--12137865	36	3.1	35	83	10	118	69	17	5	7	1.31
12137822--12137939	23	5.2	23	62	19	59	67	20	6	5	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12137848--12137892	18	2.6	18	96	3	83	71	20	4	4	1.21
12137848--12137900	17	3.1	16	84	10	61	73	18	3	3	1.14
12137860--12137900	18	2.3	18	91	0	64	78	17	2	2	0.98
12137866--12137936	22	3.4	22	75	21	73	67	19	7	5	1.35
12137883--12137940	22	2.6	22	77	17	75	67	20	6	5	1.34
12138221--12138886	334	2.0	334	94	0	1161	27	13	24	35	1.92
12139423--12139466	23	1.9	23	85	0	61	25	13	9	52	1.70
12139782--12139819	20	1.9	20	88	0	58	44	5	13	36	1.66
12140354--12140527	60	2.9	60	83	5	217	24	16	10	47	1.79
12140636--12140760	66	1.9	65	95	1	223	44	7	15	32	1.73
12141367--12141409	17	2.5	17	88	3	59	20	23	2	53	1.57
12147252--12147299	19	2.5	19	72	0	51	52	0	0	47	1.00
12153803--12153842	21	1.9	21	94	0	71	25	27	7	40	1.82
12153802--12153853	21	2.5	20	84	9	68	26	23	5	44	1.76
12156434--12156488	16	3.4	17	82	9	62	41	1	3	52	1.29
12157066--12157094	3	9.7	3	100	0	58	31	0	0	68	0.89
12157973--12158178	30	6.9	29	83	6	234	39	23	1	35	1.66
12157973--12158178	59	3.5	60	89	4	310	39	23	1	35	1.66
12157969--12158202	30	7.9	28	80	9	200	37	23	2	36	1.69
12158003--12158202	59	3.4	59	87	5	280	38	22	2	38	1.65
12158186--12158320	29	4.6	29	74	17	93	29	22	5	42	1.77
12158189--12158353	87	1.9	88	82	3	208	29	23	6	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12158188--12158378	87	2.2	87	79	5	197	30	24	5	40	1.77
12160226--12160256	16	1.9	16	93	0	53	54	6	3	35	1.42
12161744--12161821	6	12.5	6	72	12	50	73	1	3	21	1.07
12161744--12161824	13	6.7	11	73	24	58	74	1	3	20	1.05
12161774--12161820	15	3.3	14	82	11	51	72	2	4	21	1.12
12171423--12171468	3	15.3	3	100	0	92	67	0	0	32	0.91
12180585--12180633	16	3.1	16	69	0	53	63	6	8	22	1.44
12188713--12188758	22	2.1	22	87	0	65	28	10	13	47	1.76
12205765--12205844	39	2.0	40	92	2	135	31	22	17	28	1.97
12205769--12205861	39	2.4	38	83	7	107	31	23	17	27	1.97
12218626--12218661	17	2.1	17	89	0	54	47	0	0	52	1.00
12219598--12219650	27	2.1	27	86	10	76	22	7	3	66	1.34
12223541--12223609	34	2.0	34	94	0	120	36	15	10	37	1.82
12225027--12225206	62	2.9	63	87	4	251	33	16	15	35	1.89
12226813--12226838	7	3.7	7	100	0	52	61	11	0	26	1.30
12227183--12227223	16	2.6	16	84	7	57	46	0	2	51	1.14
12227258--12227300	17	2.5	16	78	14	50	41	0	2	55	1.12
12235949--12235974	2	13.0	2	100	0	52	50	0	0	50	1.00
12237285--12237310	13	2.0	13	100	0	52	23	0	0	76	0.78
12241479--12241721	133	1.8	133	86	1	353	29	17	23	29	1.97
12245336--12245374	21	1.9	21	84	5	53	58	7	5	28	1.47
12246286--12246331	20	2.3	20	100	0	92	36	23	13	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12247441--12247526	34	2.5	35	83	3	104	32	33	10	23	1.89
12249868--12249941	31	2.4	31	79	4	78	45	6	16	31	1.73
12251506--12251546	17	2.4	17	91	4	64	21	24	2	51	1.60
12252395--12252441	21	2.2	21	88	3	67	72	4	10	12	1.25
12252421--12252450	16	1.9	16	93	6	53	66	3	16	13	1.37
12253253--12253295	19	2.3	19	84	8	52	58	4	0	37	1.19
12269641--12269715	37	2.0	37	84	5	98	18	14	2	64	1.41
12272989--12273147	74	2.1	74	88	0	228	33	11	23	30	1.90
12277417--12277449	17	1.9	17	88	11	50	54	3	12	30	1.52
12315643--12315822	90	2.0	91	83	5	231	27	12	12	46	1.79
12316273--12316318	20	2.3	20	88	3	67	69	2	4	23	1.17
12316943--12316987	21	2.2	20	84	7	56	31	6	6	55	1.52
12318230--12318280	23	2.2	23	96	0	93	31	23	21	23	1.98
12321688--12321721	11	3.2	11	91	4	52	91	5	0	2	0.51
12321770--12321804	13	2.7	13	86	13	54	45	40	0	14	1.45
12323065--12323117	11	4.9	10	80	19	54	20	1	0	77	0.87
12323064--12323117	25	2.2	25	83	12	67	20	1	0	77	0.86
12323205--12323317	3	36.7	3	70	16	54	31	5	3	59	1.37
12323274--12323347	28	2.8	27	80	12	73	31	2	2	63	1.22
12324461--12324971	23	22.3	23	87	2	697	33	5	14	46	1.66
12328173--12328210	15	2.4	16	86	4	51	42	0	0	57	0.98
12328171--12328229	24	2.4	25	80	11	68	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12329963--12330091	66	2.0	66	90	0	204	32	20	23	23	1.98
12340140--12340194	25	2.3	23	84	6	65	34	21	32	10	1.89
12347203--12347248	23	2.0	24	91	4	76	36	23	28	10	1.89
12347880--12347915	18	2.0	18	94	0	63	52	0	5	41	1.24
12348325--12348374	26	1.9	26	92	8	84	44	20	4	32	1.70
12349898--12350121	29	7.7	29	76	13	176	36	24	4	34	1.77
12349898--12350116	59	3.7	58	77	8	205	36	23	5	34	1.77
12350094--12350245	59	2.6	58	75	5	162	37	23	5	33	1.77
12354588--12354949	180	2.0	180	93	0	616	36	16	19	27	1.93
12364697--12364737	3	13.7	3	100	0	82	68	0	0	31	0.90
12371370--12371421	19	2.7	19	81	0	68	23	28	17	30	1.97
12377576--12377640	33	2.1	32	88	8	98	36	12	0	50	1.40
12381541--12381604	27	2.3	27	81	2	74	46	0	1	51	1.10
12381587--12381627	8	5.2	8	77	16	50	63	0	0	36	0.95
12381581--12381654	23	3.2	23	78	5	87	52	1	0	45	1.09
12381605--12381672	29	2.3	31	78	14	72	47	2	1	48	1.26
12382024--12382084	26	2.2	29	80	11	67	36	0	1	62	1.05
12382025--12382084	28	2.1	28	82	11	70	36	0	1	61	1.06
12383141--12383190	21	2.5	20	80	3	55	22	2	4	72	1.12
12384789--12384844	25	2.2	25	75	6	60	57	1	3	37	1.27
12384804--12384842	12	3.2	12	78	7	51	58	2	0	38	1.12
12389984--12390046	22	2.9	22	78	0	81	38	20	26	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12396925--12397028	52	2.0	52	100	0	208	38	13	1	46	1.54
12418455--12418511	23	2.6	21	77	5	60	42	28	7	22	1.80
12421917--12421945	13	2.1	14	93	6	51	20	24	3	51	1.62
12432371--12432428	17	3.4	17	69	26	50	51	1	0	46	1.11
12432859--12432938	6	13.3	6	81	15	76	48	2	0	48	1.14
12432857--12432927	37	1.9	37	83	11	92	43	2	0	53	1.15
12432859--12432936	11	7.1	11	74	10	61	48	2	0	48	1.15
12432861--12432936	17	4.6	17	77	9	77	48	2	0	48	1.15
12434705--12434891	30	6.3	30	83	5	211	39	20	4	35	1.73
12434704--12434897	90	2.2	88	85	5	264	38	21	4	35	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163