genome.fa.s8.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  93  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26513113--26513161	20	2.7	18	77	22	57	42	2	4	51	1.32
26513140--26513254	61	1.9	58	84	8	151	40	2	5	51	1.38
26519533--26519739	52	4.0	52	85	0	261	33	22	14	28	1.94
26519567--26519739	52	3.3	52	90	0	265	33	21	14	30	1.93
26519549--26519739	104	1.8	105	89	1	303	31	22	15	30	1.95
26522395--26522437	14	3.1	14	75	0	50	32	20	25	20	1.97
26522388--26522427	21	2.0	20	85	5	53	37	22	22	17	1.94
26529152--26529179	14	2.0	14	100	0	56	42	0	7	50	1.30
26533958--26534279	161	2.0	160	96	0	590	42	5	19	32	1.75
26534597--26534841	38	6.4	38	77	3	199	32	18	15	33	1.93
26536351--26536855	42	12.0	42	83	2	586	22	8	13	55	1.64
26536931--26536964	16	2.1	16	88	0	50	44	2	23	29	1.68
26537384--26537424	21	2.0	21	90	0	64	12	12	36	39	1.80
26539157--26539219	29	2.2	29	82	0	72	25	6	15	52	1.66
26541771--26541825	12	4.6	12	79	0	56	60	1	12	25	1.43
26542179--26542226	24	2.0	24	87	0	69	20	14	16	47	1.82
26542311--26542399	47	1.9	46	86	6	126	32	10	15	41	1.81
26542311--26542398	23	3.8	23	83	4	97	32	10	15	40	1.81
26549566--26549730	29	5.6	29	66	20	92	33	3	29	34	1.73
26549566--26549781	29	7.3	30	66	23	77	33	2	31	32	1.72
26549718--26549888	29	6.0	28	73	17	136	36	1	29	32	1.65
26549565--26549816	117	2.2	115	82	7	301	34	2	29	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26549564--26549800	59	4.1	58	84	3	278	33	2	31	32	1.71
26549713--26549886	86	2.0	86	93	0	294	36	1	29	33	1.65
26551768--26551883	6	20.0	6	71	13	73	51	4	1	42	1.31
26551769--26551883	17	6.7	16	70	12	68	52	4	1	41	1.31
26551767--26551880	59	1.9	58	84	5	149	50	4	1	43	1.32
26553687--26553785	49	2.0	48	94	1	171	45	9	14	31	1.76
26555420--26555454	14	2.5	14	95	0	61	25	2	34	37	1.71
26562499--26562566	22	3.1	22	84	0	82	36	13	13	36	1.83
26581024--26581048	11	2.3	11	100	0	50	12	0	8	80	0.92
26581787--26581820	13	2.5	14	85	9	52	76	0	8	14	1.01
26581787--26581820	7	5.0	7	89	7	52	76	0	8	14	1.01
26585567--26585607	3	13.7	3	89	0	64	34	31	0	34	1.58
26585606--26585634	3	10.0	3	92	7	51	31	0	0	68	0.89
26603657--26603713	21	2.7	21	86	0	87	33	26	8	31	1.87
26606725--26606754	12	2.4	12	94	5	51	63	0	36	0	0.95
26606924--26607001	32	2.4	32	79	8	95	29	3	15	51	1.61
26609588--26609636	25	2.0	25	91	0	80	55	6	12	26	1.60
26610506--26610580	31	2.5	31	87	10	102	45	22	12	20	1.83
26611645--26611720	32	2.5	30	85	12	93	23	10	18	47	1.79
26613093--26613205	57	1.9	60	87	5	169	38	6	12	43	1.68
26615839--26616002	51	3.2	51	78	4	161	36	23	15	25	1.93
26618161--26618567	29	14.0	29	68	20	187	36	3	25	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26618161--26618566	59	7.0	56	77	12	317	36	3	25	34	1.73
26618263--26618565	59	5.2	58	80	11	336	36	2	25	35	1.70
26618263--26618565	57	5.2	57	82	9	357	36	2	25	35	1.70
26620369--26620443	23	3.3	22	73	14	71	53	2	1	42	1.23
26620370--26620425	11	4.9	11	81	14	51	53	1	1	42	1.21
26620351--26620443	6	16.2	6	68	20	56	52	2	2	43	1.25
26620382--26620445	28	2.2	29	91	2	103	56	1	0	42	1.09
26620394--26620425	11	2.8	11	95	4	55	59	0	0	40	0.97
26626412--26626446	7	4.7	7	92	7	52	14	0	2	82	0.77
26626412--26626446	15	2.3	15	90	9	54	14	0	2	82	0.77
26628099--26628240	28	5.1	27	80	6	115	33	23	17	25	1.96
26628106--26628240	56	2.4	55	78	8	139	32	24	17	25	1.96
26635311--26635377	28	2.4	28	79	0	80	38	22	13	25	1.90
26643808--26643859	26	2.0	27	84	3	70	63	3	23	9	1.41
26659415--26659451	18	2.1	18	89	0	56	48	0	27	24	1.51
26663572--26663653	33	2.5	33	97	0	155	56	4	30	8	1.51
26676693--26676731	18	2.3	17	91	8	62	23	17	7	51	1.71
26680540--26680578	18	2.1	19	85	9	53	38	2	17	41	1.64
26687690--26687729	22	2.0	20	85	14	55	32	25	30	12	1.92
26687912--26687955	22	2.1	21	83	8	54	45	9	22	22	1.80
26695386--26695429	23	2.0	22	86	4	61	45	15	0	38	1.47
26701022--26701066	18	2.4	20	78	17	60	22	2	4	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26701133--26701176	17	2.6	18	80	20	58	29	9	0	61	1.27
26701136--26701187	22	2.4	21	81	9	59	32	7	0	59	1.26
26706464--26706496	17	2.0	17	88	5	50	72	6	0	21	1.05
26713975--26714132	84	1.9	84	80	2	183	21	32	13	32	1.92
26715872--26715910	15	2.5	16	83	4	53	28	10	0	61	1.28
26724972--26726148	392	3.0	390	89	1	1748	24	17	21	36	1.94
26726495--26726998	252	2.0	252	99	0	990	28	13	16	40	1.87
26727728--26727757	14	2.1	15	93	6	53	76	0	6	16	0.99
26737410--26737456	24	2.0	24	83	8	60	51	8	12	27	1.69
26740385--26740448	27	2.4	27	91	0	101	42	14	31	12	1.82
26744143--26744251	50	2.2	50	80	11	125	49	7	2	40	1.45
26748927--26748980	3	18.0	3	84	0	72	25	0	7	66	1.17
26749069--26749094	6	4.3	6	100	0	52	19	0	15	65	1.27
26748836--26749257	142	3.0	142	89	3	590	22	12	17	48	1.80
26749093--26749144	3	17.3	3	100	0	104	32	32	0	34	1.58
26748866--26749280	136	3.0	136	89	3	582	22	13	14	49	1.78
26749205--26749236	6	5.3	6	100	0	64	18	0	15	65	1.27
26749235--26749326	3	30.7	3	97	0	175	34	32	0	32	1.58
26753024--26753075	24	2.2	24	92	0	86	53	9	11	25	1.67
26753032--26753081	24	2.1	24	96	0	91	56	10	10	24	1.63
26759085--26759198	52	2.2	53	88	3	167	34	13	25	27	1.93
26759084--26759207	27	4.7	27	82	4	153	33	12	25	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26759377--26759705	158	2.1	158	88	0	496	34	16	20	27	1.95
26761987--26762021	18	1.9	18	94	0	61	5	48	14	31	1.67
26769533--26769590	24	2.5	22	81	13	80	36	0	3	60	1.14
26770028--26770069	21	2.0	22	86	13	61	45	7	0	47	1.30
26771425--26771451	13	2.1	13	100	0	54	40	14	14	29	1.86
26771828--26771912	31	2.8	31	78	10	95	67	3	1	28	1.15
26779715--26779748	13	2.6	13	90	0	50	0	0	17	82	0.67
26781553--26781612	31	1.9	31	89	0	93	35	11	15	38	1.83
26787501--26787547	24	2.0	24	83	8	60	27	12	10	48	1.74
26790350--26790414	33	2.0	32	84	6	85	38	21	4	35	1.74
26792866--26792906	21	2.0	21	85	0	55	31	7	17	43	1.76
26798872--26798906	19	1.9	17	88	11	52	34	0	28	37	1.58
26800449--26800775	49	6.6	48	75	4	249	24	22	17	36	1.95
26800449--26800704	98	2.6	98	83	3	289	23	23	16	36	1.94
26800449--26800776	147	2.2	148	77	4	358	24	21	17	36	1.95
26805848--26805950	42	2.5	42	82	7	113	22	34	24	18	1.96
26808534--26808564	16	1.9	16	93	0	53	48	0	6	45	1.28
26809868--26809913	22	2.1	22	95	0	83	19	21	8	50	1.75
26810245--26810287	20	2.2	20	95	0	77	51	16	6	25	1.69
26813606--26813677	21	3.4	21	90	3	117	20	20	11	47	1.81
26816603--26816635	16	2.1	16	94	0	57	33	0	0	66	0.92
26816954--26816991	12	2.8	13	84	15	51	23	0	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26817928--26818061	29	4.5	30	82	6	157	40	18	3	37	1.69
26817989--26818046	31	1.9	30	89	3	89	34	20	5	39	1.75
26817930--26818061	60	2.2	60	82	9	155	40	18	3	37	1.68
26818131--26818189	26	2.2	27	81	3	66	23	3	6	66	1.32
26825003--26825083	36	2.2	36	84	4	119	32	8	24	34	1.86
26825468--26825569	10	9.2	10	73	17	69	38	4	17	39	1.71
26825473--26825664	59	3.1	59	81	12	240	36	5	19	38	1.76
26825591--26825636	20	2.3	21	88	7	69	39	6	17	36	1.76
26825532--26825671	68	2.1	68	90	0	217	36	6	20	37	1.78
26825667--26825929	23	11.4	23	88	0	382	33	3	15	48	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163