genome.fa.s8.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  136  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36823597--36823641	23	2.0	23	86	0	63	35	20	13	31	1.91
36825050--36825107	26	2.2	26	84	6	73	29	15	15	39	1.88
36825667--36825706	17	2.2	19	86	8	57	25	2	5	67	1.23
36825833--36825864	15	2.0	17	88	11	50	31	0	3	65	1.08
36826938--36826971	16	2.2	15	89	5	50	29	0	2	67	1.05
36826940--36826982	22	2.0	22	85	0	59	32	0	2	65	1.06
36827157--36827181	13	1.9	13	100	0	50	72	0	20	8	1.10
36828746--36828797	27	1.9	28	85	14	74	59	13	7	19	1.58
36830788--36830841	26	2.1	26	82	6	65	31	5	3	59	1.38
36841422--36841490	20	3.6	20	73	11	72	57	2	4	34	1.33
36841406--36841500	37	2.6	37	90	4	142	55	3	3	37	1.32
36841480--36841517	14	2.7	14	88	8	51	50	2	2	44	1.30
36841480--36841530	14	3.8	13	80	12	50	47	1	3	47	1.32
36841717--36841795	6	13.2	6	77	15	83	48	2	0	49	1.14
36841709--36841795	17	5.3	16	78	13	88	47	2	1	49	1.21
36842805--36842835	16	1.9	16	93	0	53	16	22	22	38	1.92
36843709--36844083	59	6.4	59	89	3	535	32	28	3	35	1.75
36856224--36856467	68	3.5	68	85	9	346	36	13	19	30	1.91
36856226--36856420	37	5.4	35	69	19	134	36	12	20	31	1.89
36856207--36856467	143	1.8	143	91	1	434	35	14	19	30	1.91
36856490--36856609	37	3.4	36	73	14	115	35	14	20	29	1.92
36856968--36857046	6	13.2	6	79	15	92	46	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36856960--36857046	17	5.3	16	80	13	88	45	2	1	50	1.21
36856974--36857033	31	1.9	31	93	6	104	43	3	0	53	1.17
36856963--36857036	37	2.0	37	84	12	98	43	2	1	52	1.23
36857737--36857767	16	1.9	16	93	0	53	16	22	22	38	1.92
36858646--36859079	59	7.4	58	88	3	604	32	28	3	36	1.75
36860791--36860815	11	2.3	11	100	0	50	44	0	0	56	0.99
36860794--36860831	20	1.9	20	88	0	58	47	0	5	47	1.24
36861746--36861816	28	2.4	29	90	6	117	46	1	0	52	1.09
36861761--36861808	13	3.5	13	75	10	51	52	2	0	45	1.12
36861772--36861814	14	3.1	14	74	12	52	46	0	0	53	1.00
36862543--36862608	32	2.2	29	83	8	78	40	0	7	51	1.30
36874803--36874847	18	2.6	18	76	16	58	28	4	4	62	1.34
36875275--36875314	19	2.0	20	90	4	64	55	0	2	42	1.13
36879777--36879801	13	1.9	13	100	0	50	40	0	20	40	1.52
36882118--36882159	19	2.2	19	100	0	84	57	14	19	9	1.64
36882242--36882306	29	2.6	25	83	16	73	50	4	0	44	1.22
36882234--36882299	29	2.3	29	91	0	114	54	6	0	39	1.25
36890022--36890081	30	2.0	30	83	9	77	53	8	16	21	1.69
36890238--36890370	30	4.4	30	94	1	214	38	0	21	40	1.53
36892302--36892397	6	16.0	6	74	15	83	55	1	2	41	1.18
36892310--36892367	17	3.6	17	79	13	77	56	0	3	39	1.16
36892304--36892390	11	7.9	11	76	13	81	57	0	2	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36892310--36892399	31	3.0	29	88	4	117	57	1	2	38	1.18
36892953--36892994	22	1.9	22	90	0	66	40	0	0	59	0.97
36893425--36893546	61	2.0	61	87	8	174	33	7	4	54	1.47
36895117--36895154	20	1.9	20	100	0	76	7	7	15	68	1.37
36895087--36895151	31	2.1	31	85	5	87	6	7	16	69	1.33
36895106--36895230	20	5.9	20	70	15	65	8	6	18	66	1.40
36895145--36895241	24	4.3	23	73	11	76	9	6	19	64	1.43
36895117--36895245	67	1.9	66	83	7	163	10	6	17	65	1.43
36895348--36895431	38	2.2	38	81	12	100	28	0	8	63	1.23
36896837--36896901	28	2.3	29	81	7	71	44	3	3	49	1.33
36903684--36903746	30	2.1	30	100	0	126	28	30	6	34	1.82
36904065--36904103	6	6.5	6	87	0	51	23	30	0	46	1.53
36907905--36908149	52	4.7	52	79	5	255	34	23	14	27	1.94
36912004--36912226	51	4.5	51	72	13	167	43	3	7	45	1.48
36912095--36912139	23	2.0	23	83	8	58	53	2	4	40	1.33
36911888--36912136	136	1.8	136	88	4	385	44	4	8	42	1.57
36912472--36912941	238	2.0	238	89	3	732	37	5	14	42	1.70
36922474--36922498	13	1.9	13	100	0	50	64	28	8	0	1.22
36925186--36925212	6	4.5	6	100	0	54	14	0	0	85	0.61
36925670--36926475	49	16.4	49	74	5	673	19	25	17	38	1.93
36925678--36926475	98	8.1	98	90	0	1200	19	24	17	38	1.93
36932123--36932348	114	2.0	113	87	1	328	38	16	15	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36934069--36934107	18	2.2	18	86	9	53	28	12	43	15	1.83
36941498--36941531	2	17.5	2	87	6	52	47	0	2	50	1.16
36943464--36943522	27	2.1	27	81	9	66	33	11	22	32	1.90
36943532--36943932	59	6.8	58	86	4	511	34	3	29	31	1.76
36943534--36943932	117	3.4	117	85	5	522	35	4	29	31	1.76
36943509--36943961	29	15.5	29	68	19	133	35	4	28	32	1.76
36943533--36943993	117	3.9	115	82	6	504	34	4	28	32	1.77
36945946--36946012	11	6.0	11	83	10	75	56	2	0	40	1.14
36945946--36946014	5	12.6	5	78	17	66	55	2	0	42	1.15
36945953--36946026	17	4.4	16	83	8	76	54	4	1	40	1.28
36945946--36946012	28	2.4	28	92	0	107	56	2	0	40	1.14
36949954--36950043	43	2.1	43	100	0	180	21	20	18	40	1.92
36962689--36962713	13	1.9	13	100	0	50	40	0	8	52	1.31
36962698--36962740	17	2.5	17	88	3	59	37	0	4	58	1.19
36962698--36962745	18	2.8	17	87	6	62	37	0	6	56	1.25
36962714--36962753	16	2.4	17	87	4	55	37	2	5	55	1.35
36964478--36964630	30	5.1	29	68	21	93	31	28	3	35	1.76
36964468--36964821	59	6.0	59	83	4	410	31	28	3	36	1.73
36964548--36964646	29	3.3	30	72	16	89	29	32	4	34	1.76
36964568--36964785	29	7.5	30	68	16	102	32	29	3	35	1.73
36968207--36968330	51	2.4	51	82	0	140	32	23	12	32	1.91
36968314--36968348	16	2.2	16	100	0	70	31	28	11	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36968263--36968399	67	2.0	67	94	0	238	32	24	12	31	1.92
36973791--36973964	89	2.0	89	91	2	287	41	26	6	24	1.80
36990892--36990948	21	2.8	21	79	12	64	40	10	1	47	1.48
36991139--36991175	18	2.0	20	89	10	60	48	0	0	51	1.00
36996014--36996072	19	3.2	18	79	13	59	64	1	0	33	1.04
36996008--36996053	19	2.5	17	83	16	56	58	2	0	39	1.10
36996487--36996526	12	3.5	11	86	10	53	42	0	2	55	1.13
37002604--37002645	15	2.8	16	78	10	52	45	0	0	54	0.99
37004510--37004534	7	3.6	7	100	0	50	32	12	12	44	1.78
37004527--37004571	23	2.0	23	86	0	63	31	13	20	35	1.91
37004781--37004856	34	2.2	34	92	0	134	28	19	0	51	1.47
37007839--37007865	3	9.0	3	100	0	54	33	33	0	33	1.58
37010683--37010847	87	1.9	86	85	6	226	36	23	14	25	1.93
37013908--37013942	18	1.9	18	100	0	70	54	17	5	22	1.64
37014027--37014082	18	3.1	19	82	12	64	58	5	0	35	1.21
37014082--37014120	20	2.0	20	89	0	60	58	2	0	38	1.12
37028168--37028236	24	2.8	24	80	6	77	18	15	30	34	1.93
37028929--37028983	21	2.6	21	82	0	74	30	9	27	32	1.88
37048409--37048469	31	2.0	31	90	6	97	45	14	11	27	1.80
37049346--37049391	16	2.9	16	83	3	58	65	0	0	34	0.93
37053035--37053079	3	15.7	3	86	9	67	66	0	33	0	0.92
37053653--37053710	27	2.1	27	87	0	80	53	12	13	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37059709--37059764	25	2.2	25	87	0	76	66	5	5	23	1.34
37061178--37061634	161	2.8	161	92	1	765	52	19	5	22	1.67
37061469--37061547	22	3.5	22	73	20	72	54	21	3	20	1.60
37061745--37061776	7	4.9	7	85	14	50	71	15	0	12	1.14
37061747--37061771	12	2.1	12	100	0	50	68	16	0	16	1.22
37061780--37061835	25	2.2	25	96	0	103	39	16	14	30	1.88
37062019--37062062	12	3.7	12	87	0	61	59	15	11	13	1.62
37062343--37062426	35	2.4	35	87	0	114	59	15	2	22	1.48
37063408--37063437	13	2.3	13	94	0	51	10	10	16	63	1.51
37072657--37072699	14	3.2	13	77	9	50	18	18	4	58	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163