genome.fa.s8.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  39  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10206401--10206513	59	1.9	57	89	8	174	33	9	15	41	1.79
10207895--10208025	55	2.4	54	83	1	145	30	8	13	47	1.73
10210108--10210309	30	6.7	30	79	5	212	38	26	2	32	1.72
10210108--10210374	59	4.5	58	82	5	261	36	26	4	32	1.77
10210356--10210445	29	3.1	30	69	15	80	30	24	8	36	1.86
10210155--10210445	59	4.9	59	79	11	183	34	26	6	33	1.81
10212387--10212518	55	2.4	55	85	0	174	50	14	8	27	1.71
10213229--10213271	20	2.2	19	84	12	52	53	0	0	46	1.00
10213757--10213907	26	5.7	26	71	19	91	72	5	2	19	1.17
10213760--10213908	29	5.1	28	68	22	85	71	5	2	20	1.19
10213755--10213908	4	37.5	4	69	21	61	71	5	2	20	1.18
10214030--10214074	5	8.6	5	82	7	54	73	4	2	20	1.11
10214030--10214074	16	2.9	15	80	9	54	73	4	2	20	1.11
10220743--10220851	57	1.9	57	86	3	157	47	16	3	32	1.64
10223563--10223726	4	40.0	4	69	23	67	70	4	4	20	1.24
10223563--10223726	9	17.9	9	67	20	56	70	4	4	20	1.24
10223501--10223679	78	2.3	78	79	10	183	69	5	6	18	1.28
10223622--10223689	15	4.5	15	75	17	61	72	4	4	19	1.19
10223619--10223711	11	8.5	10	73	15	53	70	4	3	21	1.18
10223622--10223726	34	3.0	34	80	10	97	70	3	3	21	1.19
10229121--10229170	23	2.1	24	81	3	57	56	26	8	10	1.60
10229989--10230021	16	2.1	15	94	5	57	24	45	0	30	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10232491--10232595	4	25.2	4	73	14	70	71	3	4	20	1.20
10232470--10232594	65	1.9	68	85	5	175	68	4	7	19	1.31
10232699--10232766	30	2.3	29	82	12	84	64	4	8	22	1.40
10232748--10232793	5	8.8	5	86	9	65	76	2	2	19	1.00
10232748--10232793	16	2.9	15	84	9	65	76	2	2	19	1.00
10235193--10235217	5	5.0	5	100	0	50	80	0	20	0	0.72
10236433--10236504	6	12.5	6	75	11	53	43	2	1	52	1.24
10236447--10236518	22	3.2	23	84	5	85	47	2	2	47	1.31
10236905--10237029	42	3.0	42	87	3	182	45	21	0	32	1.52
10237583--10237608	5	5.2	5	100	0	52	23	19	19	38	1.93
10242192--10242402	30	7.1	29	79	8	203	38	26	1	33	1.65
10242202--10242403	59	3.4	58	84	4	244	38	25	1	34	1.65
10242192--10242461	59	4.6	58	80	9	219	38	26	2	32	1.72
10242350--10242474	58	2.1	59	86	1	171	36	24	8	31	1.84
10242350--10242509	58	2.7	58	80	9	164	33	23	8	35	1.84
10242557--10242618	28	2.2	28	88	5	90	33	27	9	29	1.88
10247680--10247757	12	6.2	12	72	20	61	79	1	16	2	0.91
10248725--10248944	51	4.4	51	69	7	171	41	18	25	14	1.88
10248725--10248949	101	2.2	101	87	0	315	41	18	25	14	1.88
10249334--10250154	207	4.0	206	90	1	1261	33	19	23	23	1.97
10250519--10250600	6	13.5	6	72	12	69	40	2	2	54	1.26
10253591--10253695	29	3.5	31	82	10	110	36	27	3	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10253572--10253701	60	2.2	60	83	6	156	38	26	3	31	1.74
10253667--10253709	22	2.0	21	90	4	68	39	25	0	34	1.56
10253638--10253735	51	1.9	51	87	4	144	35	26	3	34	1.72
10253692--10253819	59	2.2	59	80	6	145	35	24	8	31	1.85
10257304--10257366	30	2.1	30	82	8	74	26	12	11	49	1.74
10257570--10257729	29	5.4	29	70	18	105	48	12	14	24	1.78
10257571--10257734	60	2.7	61	87	2	226	50	12	13	23	1.75
10258172--10258205	17	2.0	17	88	0	50	23	23	5	47	1.73
10258983--10259027	22	2.0	22	100	0	90	17	13	17	51	1.77
10264864--10264919	23	2.3	24	84	9	69	69	7	1	21	1.22
10264886--10264993	4	25.8	4	71	19	60	69	4	4	21	1.25
10264886--10264994	9	12.3	9	67	16	50	69	4	4	21	1.24
10264886--10264933	14	3.5	13	80	2	51	70	4	2	22	1.15
10264939--10264987	22	2.2	22	80	16	57	69	4	4	22	1.23
10264943--10264995	19	3.0	18	81	10	65	73	3	1	20	1.08
10266187--10266264	26	2.8	28	81	13	90	69	5	2	23	1.21
10266127--10266264	4	33.8	4	69	16	70	68	5	4	21	1.26
10266335--10266402	30	2.3	29	82	12	84	64	7	8	19	1.45
10266391--10266429	5	7.6	5	82	5	51	74	0	0	25	0.82
10271939--10272046	31	3.6	30	72	20	91	24	16	12	46	1.82
10272009--10272072	30	2.1	30	82	8	76	29	17	10	42	1.83
10271939--10272125	89	2.1	90	83	5	227	23	16	13	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10272282--10272469	60	3.2	60	84	6	222	47	12	14	25	1.79
10276998--10277183	51	3.6	52	84	2	241	30	24	13	31	1.93
10278184--10278383	98	2.0	99	85	5	271	38	15	17	29	1.89
10278648--10278915	29	9.1	29	69	14	135	39	5	23	31	1.78
10278648--10278898	59	4.3	59	78	4	249	38	5	23	32	1.78
10278826--10279045	29	7.5	29	74	12	148	40	4	22	32	1.74
10278826--10279045	60	3.7	58	82	8	257	40	4	22	32	1.74
10280940--10281026	6	15.5	6	68	13	51	49	5	3	41	1.43
10280941--10281025	17	5.1	16	68	12	55	50	5	3	40	1.44
10280949--10281024	17	4.6	16	74	8	62	52	6	3	36	1.46
10282376--10282438	22	2.7	23	80	7	74	19	19	28	33	1.96
10283509--10283551	20	2.2	19	84	12	52	53	2	0	44	1.13
10284000--10284032	15	2.2	15	89	10	50	63	12	12	12	1.52
10284088--10284174	11	7.7	11	68	26	58	72	3	1	22	1.07
10284086--10284157	30	2.3	31	83	11	85	70	4	1	23	1.12
10284083--10284174	29	3.1	29	75	16	91	71	3	1	23	1.07
10284034--10284174	4	34.0	4	69	19	67	70	4	3	21	1.20
10285281--10285325	23	2.0	23	86	0	63	17	22	44	15	1.86
10291009--10291121	58	1.9	58	87	3	165	49	13	4	32	1.62
10294202--10294270	31	2.3	30	85	7	86	31	17	8	42	1.80
10294146--10294320	89	1.9	91	83	4	230	24	16	12	47	1.80
10294634--10294690	21	2.7	21	88	0	78	33	24	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10295359--10295644	52	5.5	52	82	5	319	35	24	14	25	1.93
10300832--10300905	21	3.5	21	75	0	67	31	29	10	28	1.91
10301568--10301857	52	5.6	51	81	6	334	34	25	14	26	1.94
10301568--10301854	101	2.8	102	84	3	351	34	25	14	25	1.94
10301570--10301855	153	1.9	153	88	1	430	34	25	14	25	1.94
10306062--10306193	55	2.4	55	87	0	174	31	6	14	48	1.68
10308135--10308240	11	9.3	11	67	17	56	70	4	3	20	1.21
10308193--10308253	22	2.8	22	79	20	65	68	4	0	26	1.09
10308216--10308267	18	2.7	19	73	11	52	69	3	0	26	1.06
10317203--10317252	25	2.0	26	88	4	75	20	18	22	40	1.92
10318166--10318276	29	3.9	28	73	10	89	48	8	20	22	1.75
10318166--10318293	58	2.2	58	87	1	177	46	9	21	22	1.80
10321574--10321603	13	2.2	14	94	5	53	3	13	0	83	0.77
10325106--10325151	23	2.0	22	84	12	58	60	0	0	39	0.97
10325110--10325166	22	2.5	23	82	8	71	56	0	0	43	0.99
10328994--10329025	7	4.7	7	96	3	57	15	0	0	84	0.63
10330177--10330718	30	18.2	30	80	9	454	38	25	1	35	1.64
10349314--10349346	15	2.1	16	88	5	50	45	0	0	54	0.99
10350986--10351073	24	3.7	24	77	5	90	43	15	18	22	1.88
10350997--10351061	12	5.4	12	70	5	51	44	15	16	23	1.86
10351033--10351073	12	3.4	12	82	0	55	43	17	19	19	1.88
10352580--10352674	35	2.7	34	82	4	109	25	13	18	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10353448--10353502	21	2.6	22	81	16	64	38	23	5	32	1.78
10359293--10359356	24	2.7	24	80	2	67	26	14	9	50	1.73
10360986--10361026	17	2.4	18	88	8	59	9	4	2	82	0.89
10363471--10363500	13	2.3	13	94	0	51	33	6	0	60	1.23
10363957--10364026	29	2.5	27	80	15	72	62	2	8	25	1.38
10364709--10364876	72	2.3	72	80	7	173	47	4	7	41	1.50
10365704--10365743	20	2.0	21	85	5	55	35	7	5	52	1.51
10366954--10366988	6	5.8	6	93	0	61	82	0	17	0	0.66
10374825--10375088	116	2.3	116	87	0	375	35	28	10	25	1.89
10380265--10380322	21	2.8	21	83	0	62	32	22	10	34	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163