genome.fa.s8.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  117  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32710449--32710761	59	5.3	59	85	7	395	32	29	3	34	1.76
32722267--32722932	50	13.2	51	74	8	297	40	21	24	13	1.89
32722262--32722970	100	7.1	100	76	8	550	40	21	24	14	1.90
32722522--32722977	150	3.0	150	89	2	659	39	20	25	14	1.91
32723335--32723411	11	7.1	11	77	15	72	42	0	1	55	1.07
32723333--32723411	17	4.8	17	81	12	85	43	0	1	55	1.07
32723336--32723410	28	2.8	26	84	8	80	44	0	1	54	1.08
32723335--32723410	6	13.8	6	72	18	67	43	0	1	55	1.08
32725114--32725249	30	4.6	29	76	11	143	38	18	3	38	1.68
32725101--32725697	59	10.0	59	77	10	447	34	25	3	36	1.73
32725264--32725588	30	11.2	27	68	22	153	34	28	2	35	1.71
32725203--32725697	58	8.3	59	82	7	522	34	26	3	35	1.73
32725313--32725698	29	12.9	30	65	25	146	33	27	2	35	1.72
32725524--32725654	68	1.9	68	89	3	201	36	25	3	34	1.72
32725465--32725698	127	1.9	125	90	1	378	32	27	3	35	1.75
32725594--32725682	28	3.1	28	70	28	71	31	28	4	35	1.77
32725614--32725698	28	2.9	28	70	26	70	31	30	2	35	1.71
32735547--32735625	37	2.1	37	97	0	149	55	3	12	27	1.54
32738022--32738094	29	2.5	30	78	14	80	38	8	23	30	1.84
32738040--32738271	29	7.9	29	75	10	145	35	2	27	34	1.71
32738054--32738271	58	3.7	58	79	8	230	35	1	26	35	1.68
32739377--32739428	18	2.7	19	82	8	61	42	1	1	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32739363--32739429	27	2.5	27	85	9	75	40	4	1	53	1.30
32740189--32740242	17	3.1	18	89	7	85	59	3	0	37	1.15
32740221--32740253	11	2.8	12	86	9	50	60	3	0	36	1.12
32742559--32742592	2	17.0	2	87	0	50	52	2	0	44	1.16
32742575--32742766	58	3.2	56	73	16	172	35	5	5	52	1.49
32743413--32743645	30	7.8	30	79	9	219	35	27	2	35	1.69
32743425--32743649	90	2.5	88	83	7	251	35	27	2	35	1.71
32743414--32743738	30	11.0	29	75	8	210	34	28	3	33	1.74
32746298--32746375	6	13.5	6	70	12	56	44	2	3	48	1.34
32746302--32746349	17	2.8	17	90	9	71	39	0	6	54	1.26
32746284--32746334	23	2.2	24	89	3	77	37	1	3	56	1.29
32746302--32746363	17	3.6	17	82	6	63	41	1	4	51	1.33
32747027--32747112	3	27.0	3	71	15	57	59	2	2	36	1.23
32747018--32747114	15	6.6	14	76	14	81	58	3	2	36	1.25
32748183--32748252	26	2.7	26	97	2	131	32	17	2	47	1.62
32748266--32748458	57	3.4	57	89	3	280	32	29	2	36	1.69
32748152--32748539	29	13.8	28	71	15	173	32	25	3	38	1.73
32748498--32748557	27	2.2	27	84	3	75	35	31	8	25	1.85
32749092--32749154	11	5.5	11	79	5	72	41	4	1	52	1.32
32749099--32749153	23	2.4	23	90	3	85	43	3	1	50	1.30
32749099--32749153	6	9.7	6	75	11	53	43	3	1	50	1.30
32749197--32749257	14	4.5	14	85	8	90	36	29	18	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32749197--32749257	26	2.3	27	88	5	88	36	29	18	16	1.92
32751437--32751613	30	5.9	30	86	5	234	36	26	1	35	1.67
32751441--32751761	59	5.5	55	83	8	207	33	27	4	34	1.76
32751594--32751754	29	5.5	29	69	15	116	32	26	4	35	1.78
32751565--32751796	117	2.0	118	84	5	310	29	29	6	34	1.83
32753940--32754009	34	2.1	34	97	0	131	32	24	20	22	1.97
32759568--32759611	18	2.4	18	80	3	52	54	2	38	4	1.33
32763791--32763825	18	1.9	18	100	0	70	22	11	11	54	1.68
32764257--32764605	49	7.1	49	71	5	231	38	20	25	14	1.91
32764257--32764606	98	3.6	98	87	1	488	38	20	25	14	1.91
32764541--32764727	67	2.8	67	91	0	302	41	21	28	9	1.83
32765183--32765278	6	16.5	6	71	10	74	44	4	2	48	1.33
32765169--32765213	17	2.6	18	89	3	65	37	4	2	55	1.32
32765187--32765278	35	2.6	34	75	13	89	43	4	2	50	1.34
32765169--32765252	41	2.0	42	88	2	125	39	3	3	53	1.36
32765187--32765266	17	4.6	17	77	7	72	42	3	2	51	1.33
32765625--32765706	13	5.6	14	72	17	60	58	3	2	35	1.29
32766099--32766230	66	2.0	66	92	5	223	25	13	44	16	1.84
32766773--32766991	29	7.5	29	67	17	78	32	22	3	40	1.72
32766767--32766991	59	3.8	58	78	5	229	32	23	3	41	1.71
32766748--32767021	58	4.6	59	78	5	259	31	24	4	39	1.74
32766752--32767054	58	5.2	57	76	7	173	31	25	4	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32767006--32767066	28	2.1	28	84	3	77	27	32	11	27	1.91
32769759--32769848	9	10.6	9	72	18	77	76	0	22	1	0.85
32769743--32769862	32	3.7	32	78	9	118	75	0	21	3	0.95
32769757--32769839	23	3.6	23	79	9	82	77	0	21	1	0.84
32769765--32769858	16	5.8	16	73	21	61	74	0	23	2	0.93
32769768--32769840	24	3.0	25	78	9	89	73	0	24	1	0.90
32769757--32769848	25	3.7	23	74	18	62	77	0	21	1	0.84
32770787--32771666	50	17.8	49	73	8	417	35	16	30	17	1.92
32770787--32771476	247	2.8	246	77	5	701	35	16	29	17	1.92
32771123--32771668	297	1.8	297	83	4	717	35	16	29	17	1.92
32770779--32771680	99	9.1	98	76	6	532	36	16	29	18	1.92
32771954--32772119	39	4.3	39	70	10	115	25	30	15	28	1.95
32772851--32772912	7	8.9	7	85	0	70	43	32	0	24	1.54
32772850--32772946	21	4.5	21	80	6	104	42	28	0	28	1.56
32773371--32773404	14	2.4	14	90	0	50	47	5	5	41	1.52
32773387--32773411	10	2.5	10	100	0	50	48	0	8	44	1.32
32774028--32774443	30	13.9	30	75	7	303	33	25	3	37	1.74
32774027--32774443	60	7.0	60	77	8	343	33	25	3	37	1.74
32777890--32777923	16	2.1	16	94	0	59	50	11	0	38	1.39
32786545--32786605	28	2.1	29	81	6	79	27	8	27	36	1.85
32786619--32786754	59	2.3	59	80	9	154	36	6	23	33	1.81
32786662--32786754	29	3.1	29	73	16	91	36	4	22	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32786736--32786954	30	7.3	29	75	7	163	39	2	24	33	1.69
32786749--32786976	60	3.8	59	81	6	230	38	2	24	35	1.68
32787397--32787439	7	6.1	7	83	0	50	23	0	34	41	1.55
32787398--32787438	14	2.9	14	88	0	64	24	0	31	43	1.54
32787400--32787439	21	1.9	21	94	0	71	25	0	30	45	1.54
32788157--32788217	10	5.9	10	78	12	54	37	4	3	54	1.39
32788153--32788190	20	1.9	19	94	5	67	42	0	2	55	1.14
32794968--32795032	30	2.3	27	79	12	67	33	3	29	33	1.73
32795038--32795324	30	9.8	29	71	17	130	41	3	23	32	1.70
32794999--32795247	115	2.1	114	82	11	285	40	3	24	31	1.72
32794962--32795279	58	5.5	58	75	13	237	39	4	24	31	1.74
32795114--32795278	29	5.7	29	77	11	140	43	3	21	31	1.70
32795053--32795347	59	5.0	59	79	11	254	41	3	23	32	1.70
32795202--32795385	30	6.2	30	84	3	230	40	2	22	34	1.66
32795180--32795406	60	3.8	58	86	5	260	38	2	23	35	1.69
32795202--32795406	30	6.9	30	82	4	220	39	2	22	35	1.68
32796440--32796480	16	2.5	17	84	7	59	43	0	2	53	1.13
32797170--32797288	11	10.7	11	66	20	61	55	3	2	38	1.30
32797201--32797288	6	14.8	6	70	14	58	56	2	3	37	1.28
32797179--32797288	17	6.3	16	77	15	87	55	3	2	38	1.32
32797207--32797288	37	2.3	35	87	8	112	57	2	3	36	1.30
32798785--32798817	15	2.2	15	100	0	66	18	15	18	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32800800--32800888	46	1.9	46	93	0	151	34	8	10	46	1.69
32802150--32802453	41	7.4	41	79	7	242	30	22	27	20	1.98
32802175--32802469	82	3.6	82	84	3	355	29	22	28	19	1.98
32802175--32802469	123	2.4	122	85	2	378	29	22	28	19	1.98
32806503--32806537	16	2.2	16	89	0	52	8	11	14	65	1.46
32807882--32808104	42	5.3	43	86	4	294	22	18	30	28	1.97
32814755--32814799	17	2.6	18	82	3	56	40	4	0	55	1.20
32814790--32814839	18	2.8	18	87	0	73	44	2	2	52	1.24
32816575--32816647	29	2.5	30	77	8	78	36	26	4	32	1.75
32816591--32816724	29	5.0	28	73	18	122	34	24	5	35	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163