genome.fa.s8.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  36  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9554313--9554740	59	7.3	59	88	1	614	35	3	28	32	1.75
9554313--9554740	117	3.7	117	89	2	639	35	3	28	32	1.75
9556630--9556691	31	2.0	31	90	0	97	50	1	6	41	1.38
9564724--9564767	15	2.9	15	79	3	52	65	0	0	34	0.93
9564735--9564795	22	2.9	22	80	11	65	57	0	0	42	0.98
9565073--9565127	26	2.1	27	83	12	71	25	10	3	60	1.47
9565860--9565941	17	4.8	17	79	7	85	45	1	2	51	1.22
9565861--9565941	34	2.4	34	85	4	110	44	1	2	51	1.22
9566943--9567000	21	2.8	21	94	2	100	25	22	18	32	1.97
9567758--9568153	88	4.5	89	72	13	236	35	26	4	34	1.75
9567766--9568220	59	7.8	59	72	12	273	34	25	4	34	1.76
9567766--9568220	117	3.9	116	75	12	378	34	25	4	34	1.76
9567758--9568220	29	15.8	28	72	12	231	34	25	4	34	1.76
9567755--9568131	175	2.1	175	81	9	421	34	26	3	34	1.75
9572616--9572682	31	2.2	31	83	5	82	29	14	19	35	1.92
9573041--9573072	15	2.1	15	94	0	55	34	15	6	43	1.72
9573550--9573612	30	2.1	30	100	0	126	33	20	12	33	1.90
9597429--9597461	2	16.5	2	93	0	57	45	0	3	51	1.16
9603165--9603222	3	20.0	3	79	13	68	63	1	0	34	1.04
9603442--9603471	3	10.0	3	100	0	60	66	0	0	33	0.92
9605137--9605198	28	2.1	29	82	11	74	40	1	17	40	1.60
9607122--9607215	25	3.9	24	80	8	93	40	17	28	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9607118--9607215	48	2.1	47	86	5	135	40	16	27	15	1.88
9610590--9610845	118	2.2	118	80	2	291	36	5	22	35	1.78
9610649--9611010	119	3.1	118	83	8	382	36	3	23	37	1.70
9610675--9611003	59	5.6	59	83	9	361	35	2	24	37	1.69
9610739--9611018	30	9.4	30	74	13	202	36	1	22	38	1.65
9613342--9613969	201	3.1	198	84	4	741	23	21	19	34	1.96
9627230--9627331	23	4.3	23	77	11	100	38	21	28	11	1.89
9627227--9627290	23	2.6	25	85	9	105	40	21	26	10	1.86
9627227--9627331	48	2.2	46	82	12	117	39	20	27	12	1.89
9630543--9630604	32	2.0	31	83	3	79	45	6	4	43	1.51
9630974--9631001	3	9.3	3	100	0	56	67	0	0	32	0.91
9631376--9631423	20	2.4	21	82	10	64	43	0	0	56	0.99
9631427--9631483	30	1.9	30	82	13	73	43	5	1	49	1.35
9631957--9631994	17	2.2	18	85	4	51	13	15	5	65	1.43
9631957--9631994	18	2.2	18	90	4	60	13	15	5	65	1.43
9633086--9633122	14	2.6	15	87	8	51	78	0	2	18	0.87
9633391--9633424	17	2.1	15	89	10	50	61	0	0	38	0.96
9635242--9635282	19	2.2	18	86	8	55	19	2	4	73	1.13
9639492--9639540	25	2.0	25	84	11	66	26	26	0	46	1.53
9652406--9652433	6	4.7	6	100	0	56	85	0	14	0	0.59
9658312--9658373	27	2.3	28	81	15	69	58	0	37	4	1.20
9658319--9658365	15	2.9	16	78	15	53	57	0	36	6	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9658775--9658817	17	2.5	17	84	0	59	13	11	13	60	1.59
9666508--9666600	19	4.9	19	81	1	98	26	19	26	26	1.99
9666630--9666712	35	2.4	35	87	4	123	37	9	22	30	1.86
9672789--9672832	20	2.3	19	84	7	61	59	0	0	40	0.98
9673498--9673538	3	13.7	3	100	0	82	68	0	0	31	0.90
9673917--9673973	23	2.4	23	79	2	69	8	1	15	73	1.16
9673951--9674027	12	6.8	12	75	11	81	9	1	18	71	1.19
9673850--9674043	44	4.4	42	69	12	106	9	4	17	68	1.33
9673990--9674043	24	2.5	21	85	11	65	9	3	20	66	1.35
9677052--9677105	27	2.0	27	100	0	108	44	3	37	14	1.63
9678428--9678464	18	2.1	18	90	5	58	29	5	16	48	1.68
9679689--9679823	67	2.0	67	97	0	252	43	17	11	28	1.82
9681673--9681735	6	10.5	6	100	0	126	31	0	52	15	1.44
9682556--9682629	31	2.6	27	74	22	71	68	0	0	31	0.89
9692627--9692660	17	2.0	17	100	0	68	35	0	35	29	1.58
9710282--9710319	20	1.9	20	84	10	51	52	2	2	42	1.29
9711463--9711519	22	2.6	23	83	10	66	47	0	1	50	1.11
9719077--9719114	19	2.0	19	100	0	76	42	0	5	52	1.24
9729559--9729592	17	2.1	17	88	5	52	44	14	0	41	1.45
9733405--9733834	59	7.3	57	75	14	278	36	2	27	33	1.70
9733428--9733832	118	3.4	117	88	3	580	35	2	28	33	1.71
9733430--9733829	176	2.3	176	85	4	520	36	2	27	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9733727--9733898	29	5.8	29	73	13	95	35	2	23	37	1.70
9733823--9733902	29	2.7	30	80	5	101	33	3	20	42	1.70
9734731--9734773	22	2.0	21	90	4	68	55	6	0	37	1.27
9735503--9735537	18	1.9	18	94	0	61	20	8	14	57	1.63
9743707--9743786	4	19.2	4	75	16	65	78	0	20	1	0.81
9743703--9743781	14	5.9	13	74	21	74	79	0	18	1	0.80
9743702--9743836	54	2.6	52	81	9	152	77	0	20	2	0.87
9743689--9743821	9	14.0	9	77	12	115	78	0	17	3	0.89
9743689--9743842	54	2.9	52	79	11	147	75	0	20	3	0.93
9744758--9744961	50	4.1	50	77	6	234	35	17	31	15	1.91
9745239--9745461	78	2.9	78	83	4	297	25	30	19	24	1.98
9745239--9745465	39	5.8	39	70	3	143	25	30	19	23	1.98
9745483--9746989	209	7.2	209	90	0	2250	36	17	23	22	1.95
9747288--9747412	17	7.3	17	85	1	160	40	1	3	55	1.26
9747288--9747396	6	19.0	6	71	9	75	39	0	3	55	1.24
9747471--9747522	26	2.0	26	88	0	77	46	34	13	5	1.67
9754040--9754081	22	1.9	22	90	0	66	23	40	11	23	1.88
9755193--9755235	22	2.0	22	86	9	61	58	0	4	37	1.19
9763780--9764342	99	5.8	98	85	3	640	39	19	24	15	1.91
9763789--9764341	49	11.3	49	71	12	325	39	19	24	16	1.91
9765702--9765781	29	2.8	28	70	12	74	38	3	23	33	1.73
9765777--9765870	30	3.2	30	71	24	99	36	0	25	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9765679--9766192	59	8.8	59	84	9	578	35	2	28	33	1.71
9766142--9766250	29	3.8	29	81	9	116	35	3	21	39	1.71
9766146--9766263	29	4.1	27	77	16	103	34	2	23	38	1.69
9767427--9767456	3	10.0	3	100	0	60	33	0	0	66	0.92
9767838--9767930	26	3.4	26	71	18	89	26	7	26	38	1.83
9767810--9767932	57	2.2	57	97	1	230	26	8	26	39	1.84
9768275--9768307	6	5.8	6	92	7	52	33	0	0	66	0.92
9768279--9768326	17	2.8	17	80	3	51	41	0	0	58	0.98
9768329--9768369	17	2.4	18	76	12	50	56	7	0	36	1.27
9768754--9768882	17	7.4	17	86	9	163	41	0	2	55	1.12
9768754--9768882	6	22.2	6	74	15	119	41	0	2	55	1.12
9768754--9768882	35	3.7	35	83	8	165	41	0	2	55	1.12
9769574--9769632	3	19.0	3	79	6	64	62	1	0	35	1.05
9770656--9771079	29	14.6	29	66	17	156	31	24	4	39	1.75
9770710--9771103	57	6.9	56	80	10	363	32	25	4	37	1.77
9770709--9771083	116	3.3	112	85	7	443	32	25	4	37	1.76
9772279--9772337	31	1.9	31	92	0	100	49	6	0	44	1.29
9773337--9773385	25	2.0	25	83	0	62	53	2	6	38	1.38
9780870--9780911	22	1.9	22	95	0	75	50	0	19	30	1.48
9781054--9781191	68	2.0	68	92	0	231	28	25	13	32	1.94
9782782--9782823	22	1.9	22	95	0	75	50	0	19	30	1.48
9783839--9783865	14	1.9	14	100	0	54	66	25	0	7	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9784220--9784263	22	2.0	22	90	0	70	43	6	20	29	1.78
9784823--9784850	14	2.0	14	100	0	56	42	14	14	28	1.84
9785485--9785537	20	2.4	23	79	17	60	69	1	3	24	1.15
9787809--9787868	27	2.2	27	90	0	93	63	10	0	26	1.26
9788288--9788381	44	2.1	46	86	11	133	31	4	25	38	1.75
9788478--9788628	58	2.6	59	84	4	198	52	0	1	45	1.13
9788597--9788647	24	2.1	24	82	10	59	56	0	5	37	1.23
9798427--9798452	2	13.0	2	100	0	52	50	0	0	50	1.00
9800565--9800618	21	2.5	21	75	6	54	62	0	0	37	0.95
9801009--9801120	18	6.4	17	80	6	134	41	0	3	54	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163