genome.fa.s8.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  41  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10565544--10566065	69	7.6	69	93	2	840	33	17	20	29	1.95
10565549--10566255	31	20.5	37	68	19	340	33	16	20	29	1.95
10566065--10566323	68	3.8	69	85	3	337	34	16	19	28	1.94
10565548--10566190	207	3.1	203	85	9	729	33	16	20	29	1.95
10566589--10566664	11	6.8	11	77	8	82	43	3	1	51	1.28
10566589--10566680	17	5.5	16	76	14	80	43	3	2	51	1.30
10566592--10566663	6	12.7	6	75	16	64	41	4	1	52	1.29
10567385--10567417	17	1.9	17	93	0	57	57	3	0	39	1.14
10567390--10567457	29	2.3	30	76	16	70	52	7	1	38	1.38
10567775--10567814	20	2.0	20	85	0	53	30	17	42	10	1.82
10568417--10568792	30	12.6	30	89	2	544	37	23	2	35	1.70
10568595--10568874	30	9.5	28	77	10	90	36	25	3	35	1.73
10568774--10568913	59	2.4	58	90	4	210	30	29	5	34	1.81
10570766--10570807	22	1.9	22	90	0	66	23	11	40	23	1.88
10573334--10573365	15	2.3	15	89	10	50	15	9	6	68	1.36
10577968--10578011	23	2.0	23	86	4	63	36	4	0	59	1.18
10579125--10579166	22	1.9	22	90	0	66	23	11	40	23	1.88
10581693--10581724	15	2.3	15	89	10	50	15	9	6	68	1.36
10586327--10586370	23	2.0	23	86	4	63	36	4	0	59	1.18
10587484--10587525	22	1.9	22	90	0	66	23	11	40	23	1.88
10590053--10590084	15	2.3	15	89	10	50	15	9	6	68	1.36
10594687--10594730	23	2.0	23	86	4	63	36	4	0	59	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10595839--10595880	22	1.9	22	90	0	66	23	11	40	23	1.88
10601505--10601635	29	4.5	29	69	11	81	35	3	26	34	1.72
10601570--10601997	30	14.3	29	84	7	247	35	3	23	36	1.72
10601467--10601607	59	2.4	59	88	4	196	33	4	30	31	1.77
10601599--10601992	60	6.6	60	91	2	614	36	3	22	37	1.72
10601587--10601997	90	4.6	90	91	3	643	36	3	23	36	1.73
10602950--10603017	29	2.3	30	78	16	79	39	1	5	52	1.34
10602990--10603022	17	1.9	17	93	0	57	39	0	3	57	1.14
10603640--10603731	17	5.5	16	77	11	78	50	2	4	43	1.34
10603657--10603711	6	9.7	6	76	11	62	50	1	3	43	1.30
10603656--10603711	11	5.0	11	84	4	76	51	1	3	42	1.29
10604199--10604261	22	2.8	23	83	4	67	60	0	3	36	1.13
10608845--10608876	15	2.3	15	89	10	50	68	6	9	15	1.36
10611404--10611445	22	1.9	22	90	0	66	23	40	11	23	1.88
10612559--10612602	23	2.0	23	86	4	63	59	0	4	36	1.18
10617154--10617230	12	6.8	11	76	10	75	44	2	1	51	1.23
10617157--10617229	6	12.7	6	72	18	57	42	2	1	53	1.23
10617177--10617244	17	3.9	17	80	16	61	44	1	1	52	1.19
10617335--10617376	12	3.2	13	86	13	59	42	26	14	16	1.86
10617434--10617464	15	2.1	15	100	0	62	19	54	12	12	1.70
10618288--10618330	22	2.0	22	86	9	61	72	4	18	4	1.20
10619022--10619236	30	7.1	30	95	0	376	36	26	3	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10619273--10619550	29	9.5	28	66	18	129	33	25	3	37	1.74
10619271--10619584	59	5.4	59	88	1	470	33	27	3	35	1.75
10631558--10631946	31	11.5	31	67	19	188	34	18	20	26	1.95
10631507--10631955	68	6.5	68	92	2	738	34	18	20	26	1.96
10632245--10632321	12	6.8	11	76	10	75	44	2	1	51	1.23
10632248--10632320	6	12.7	6	72	18	57	42	2	1	53	1.23
10632268--10632335	17	3.9	17	80	16	61	44	1	1	52	1.19
10632426--10632467	12	3.2	13	86	13	59	42	26	14	16	1.86
10632525--10632555	15	2.1	15	100	0	62	19	54	12	12	1.70
10633378--10633420	22	2.0	22	86	9	61	72	4	18	4	1.20
10634115--10634493	30	12.6	30	91	0	571	37	23	3	35	1.71
10634473--10634665	59	3.3	59	91	1	307	33	27	4	34	1.76
10634113--10634551	90	4.9	88	85	6	458	36	24	3	35	1.71
10634475--10634635	29	5.5	28	70	14	119	32	27	3	36	1.75
10634505--10634665	30	5.4	29	71	9	119	33	28	3	34	1.75
10634475--10634635	30	5.5	28	69	19	107	32	27	3	36	1.75
10634473--10634709	118	2.0	118	83	6	300	30	29	5	34	1.80
10638468--10638509	22	1.9	22	90	0	66	23	40	11	23	1.88
10639623--10639666	23	2.0	23	86	4	63	59	0	4	36	1.18
10644269--10644300	15	2.3	15	89	10	50	68	6	9	15	1.36
10646829--10646870	22	1.9	22	90	0	66	23	40	11	23	1.88
10647983--10648026	23	2.0	23	86	4	63	59	0	4	36	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10652630--10652661	15	2.3	15	89	10	50	68	6	9	15	1.36
10654684--10655023	57	5.9	59	83	3	422	34	3	29	32	1.76
10654684--10655023	116	2.9	117	86	2	436	34	3	29	32	1.76
10665980--10666061	29	2.8	29	77	7	85	34	3	30	31	1.75
10665960--10666299	30	11.6	30	64	22	95	35	4	29	31	1.78
10666135--10666238	28	3.5	28	69	15	93	35	1	29	32	1.69
10666128--10666284	29	5.3	29	66	22	85	36	3	29	30	1.73
10665984--10666294	58	5.3	58	81	7	335	34	4	30	30	1.77
10667018--10667052	18	1.9	18	94	0	61	25	17	17	40	1.90
10667070--10667102	15	2.1	16	88	5	50	21	21	0	57	1.41
10667327--10667414	15	5.6	16	78	14	85	39	2	1	56	1.19
10668046--10668115	37	1.9	37	88	8	108	14	14	31	40	1.86
10668152--10668220	5	12.6	5	76	11	57	57	1	1	39	1.16
10668153--10668221	11	6.2	11	74	12	61	56	1	1	40	1.17
10668160--10668230	17	4.2	16	76	15	63	59	2	2	35	1.27
10668153--10668231	22	3.5	22	79	6	70	58	2	2	36	1.25
10668484--10668751	92	2.9	92	86	3	346	32	17	15	33	1.92
10668677--10669294	76	8.0	76	90	3	954	32	18	16	32	1.93
10668677--10669294	154	4.0	154	91	3	994	32	18	16	32	1.93
10676248--10676279	15	2.3	15	89	10	50	68	6	9	15	1.36
10678807--10678848	22	1.9	22	90	0	66	23	40	11	23	1.88
10679962--10680005	23	2.0	23	86	4	63	59	0	4	36	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10684557--10684633	12	6.8	11	76	10	75	44	2	1	51	1.23
10684560--10684632	6	12.7	6	72	18	57	42	2	1	53	1.23
10684580--10684647	17	3.9	17	80	16	61	44	1	1	52	1.19
10684738--10684779	12	3.2	13	86	13	59	42	26	14	16	1.86
10684837--10684867	15	2.1	15	100	0	62	19	54	12	12	1.70
10685691--10685733	22	2.0	22	86	9	61	72	4	18	4	1.20
10686426--10686810	30	12.7	30	91	3	612	37	25	3	33	1.73
10686792--10686982	59	3.2	59	90	1	294	33	27	4	34	1.76
10686825--10686982	30	5.3	30	68	19	107	32	29	3	34	1.75
10686792--10686952	29	5.5	29	70	14	125	33	27	3	35	1.75
10686792--10687026	118	2.0	118	82	6	287	31	28	5	34	1.80
10690786--10690827	22	1.9	22	90	0	66	23	40	11	23	1.88
10706804--10706934	29	4.5	29	69	11	81	35	3	26	34	1.72
10706869--10707297	30	14.3	29	86	5	263	35	3	23	36	1.73
10706766--10706906	59	2.4	59	88	4	196	33	4	30	31	1.77
10706898--10707292	60	6.6	60	92	1	632	35	3	23	37	1.73
10706886--10707297	90	4.6	90	92	1	659	35	3	23	36	1.74
10708251--10708318	29	2.3	30	78	16	79	39	1	5	52	1.34
10708291--10708323	17	1.9	17	93	0	57	39	0	3	57	1.14
10708941--10709032	17	5.5	16	77	11	78	50	2	4	43	1.34
10708958--10709012	6	9.7	6	76	11	62	50	1	3	43	1.30
10708957--10709012	11	5.0	11	84	4	76	51	1	3	42	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10709500--10709562	22	2.8	23	83	4	67	60	0	3	36	1.13
10714146--10714177	15	2.3	15	89	10	50	68	6	9	15	1.36
10717786--10717817	15	2.3	15	89	10	50	15	9	6	68	1.36
10722412--10722455	23	2.0	23	86	4	63	36	4	0	59	1.18
10723568--10723609	22	1.9	22	90	0	66	23	11	40	23	1.88
10726137--10726168	15	2.3	15	89	10	50	15	9	6	68	1.36
10730751--10730814	22	2.9	22	81	6	67	35	3	0	60	1.12
10730770--10730813	23	2.0	23	86	4	63	36	2	0	61	1.09
10731301--10731356	11	5.0	11	84	4	76	42	3	1	51	1.29
10731281--10731372	17	5.5	16	81	11	78	43	4	2	50	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163