genome.fa.s8.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  118  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32816643--32816744	29	3.5	28	82	9	91	35	24	4	35	1.77
32816846--32816906	27	2.2	27	82	8	79	40	27	3	27	1.72
32816756--32817039	144	2.0	146	83	2	367	33	23	5	37	1.79
32832140--32832213	31	2.5	30	83	10	91	20	4	5	70	1.24
32832763--32832807	22	2.0	23	91	4	74	8	51	0	40	1.33
32832964--32833032	17	4.1	17	80	0	84	37	1	4	56	1.28
32833727--32833756	12	2.4	13	94	5	53	26	6	0	66	1.16
32834773--32835094	29	10.9	29	76	11	230	35	22	4	37	1.75
32834768--32835061	59	5.0	58	77	13	237	34	23	4	37	1.74
32834808--32835149	29	11.6	29	74	13	159	35	23	4	36	1.75
32834767--32835154	59	6.6	57	74	13	234	35	24	4	35	1.76
32835107--32835187	28	2.8	28	70	17	67	38	30	3	27	1.74
32835134--32835303	59	2.9	59	89	0	270	32	30	7	30	1.84
32834930--32835303	29	12.8	29	74	14	288	33	28	6	31	1.82
32834930--32835303	88	4.3	87	77	7	260	33	28	6	31	1.82
32835545--32835730	97	1.9	98	89	5	288	26	16	18	39	1.91
32836159--32836197	20	2.0	20	90	5	62	58	2	28	10	1.44
32843058--32843250	46	4.2	46	78	3	190	40	25	11	21	1.88
32843059--32843288	46	5.0	46	77	5	187	40	25	12	21	1.88
32843070--32843240	92	1.8	93	83	6	231	39	26	11	22	1.88
32847665--32847724	25	2.4	25	78	10	61	38	25	10	26	1.87
32850095--32850138	15	2.9	15	79	0	52	45	2	2	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32850057--32850202	58	2.5	58	81	15	176	47	2	1	49	1.21
32850372--32850443	16	4.5	16	83	0	99	26	26	5	41	1.77
32850601--32850684	3	26.7	3	76	9	69	57	1	0	41	1.06
32850593--32850684	19	5.1	18	76	11	98	56	1	0	42	1.06
32850617--32850698	29	2.8	29	78	7	78	57	3	0	39	1.16
32851775--32851907	31	4.6	29	75	14	96	39	23	3	33	1.73
32863885--32864503	92	6.7	92	93	0	1049	35	15	15	32	1.90
32864787--32864848	6	10.7	6	75	18	60	43	1	1	53	1.20
32864787--32864861	17	4.4	17	76	5	71	44	1	2	52	1.23
32864794--32864847	28	1.9	28	96	0	99	42	1	0	55	1.10
32865242--32865301	25	2.4	25	81	10	70	38	25	10	26	1.87
32865570--32865653	3	26.7	3	76	9	69	57	1	0	41	1.06
32865562--32865653	19	5.1	18	76	11	98	56	1	0	42	1.06
32865586--32865667	29	2.8	29	78	7	78	57	3	0	39	1.16
32866769--32866951	29	6.3	28	75	11	147	36	26	5	31	1.79
32866773--32866948	60	3.0	58	81	7	169	35	26	5	32	1.80
32867045--32867105	28	2.2	28	91	5	97	36	26	9	27	1.88
32866928--32867249	145	2.2	145	83	1	394	31	24	8	35	1.86
32874382--32874484	51	2.0	52	84	1	136	35	16	6	40	1.75
32875793--32875850	21	2.8	20	75	14	55	12	6	6	74	1.22
32882043--32882371	30	11.1	30	84	2	378	34	24	2	38	1.68
32882043--32882372	59	5.6	60	85	2	416	34	24	2	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32886556--32886596	17	2.5	16	88	7	64	82	0	17	0	0.66
32886556--32886595	11	3.6	12	80	16	50	82	0	17	0	0.67
32886576--32886693	61	2.0	60	93	5	202	54	11	22	11	1.68
32888494--32889461	49	19.8	48	72	12	632	36	19	25	18	1.94
32888494--32889494	98	10.2	98	88	1	1391	36	19	25	17	1.94
32889754--32889845	39	2.3	38	78	14	96	30	27	14	28	1.95
32891545--32891842	30	10.1	30	87	2	399	36	24	1	38	1.62
32891547--32891841	58	5.0	59	89	2	405	36	24	1	37	1.63
32891547--32891841	88	3.3	87	88	2	403	36	24	1	37	1.63
32893687--32893720	17	2.0	17	94	0	59	20	0	0	79	0.73
32894811--32894850	21	1.9	21	94	0	71	55	7	0	37	1.29
32894806--32894848	9	4.8	9	82	0	50	58	4	0	37	1.19
32894811--32894857	21	2.2	21	88	0	67	53	8	2	36	1.44
32895679--32895738	31	1.9	32	86	10	88	18	13	10	58	1.62
32896011--32896272	29	8.9	29	77	10	237	36	25	3	34	1.73
32896023--32896272	59	4.3	59	81	6	301	36	25	3	34	1.73
32902065--32902129	5	13.4	5	81	15	59	81	0	16	1	0.77
32902065--32902135	13	5.8	12	81	15	83	80	0	18	1	0.79
32902065--32902135	22	3.0	24	82	15	85	80	0	18	1	0.79
32902070--32902134	21	3.1	21	82	14	73	81	0	16	1	0.77
32902065--32902134	29	2.4	29	80	17	83	81	0	17	1	0.77
32903280--32903851	50	11.3	50	71	13	339	38	22	25	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32903280--32903631	101	3.5	101	89	0	501	36	22	26	13	1.92
32903493--32903864	150	2.4	154	80	7	402	37	22	25	13	1.92
32904249--32904389	39	3.6	39	75	0	147	22	28	20	28	1.99
32904198--32904396	78	2.5	77	87	3	281	23	28	20	28	1.99
32904541--32904972	153	2.8	152	86	3	528	34	19	23	22	1.96
32906128--32906178	21	2.5	20	83	6	66	58	7	0	33	1.27
32907283--32907516	29	8.0	29	73	8	165	35	25	4	35	1.76
32907295--32907518	59	3.8	59	82	6	258	35	24	4	35	1.77
32907471--32907565	29	3.3	28	70	16	86	32	23	8	35	1.85
32907865--32908046	96	1.9	96	83	6	235	30	19	12	37	1.89
32909890--32909933	17	2.6	17	85	0	61	31	11	20	36	1.88
32911520--32911557	16	2.4	16	95	0	67	26	26	34	13	1.93
32913042--32913234	29	6.6	29	73	14	139	36	2	26	34	1.69
32913042--32913302	30	8.9	29	70	18	116	34	3	27	34	1.74
32913062--32913259	58	3.4	58	81	8	199	34	3	27	34	1.72
32914334--32914381	26	1.9	26	87	8	73	41	6	0	52	1.27
32914358--32914403	19	2.5	19	89	3	67	43	4	0	52	1.21
32915140--32915202	18	3.4	18	81	14	76	52	4	3	39	1.38
32915611--32916083	200	2.4	199	85	2	653	20	21	19	37	1.95
32915968--32916169	86	2.3	86	87	1	280	24	25	15	34	1.95
32915804--32916369	286	2.0	286	89	1	866	22	22	18	36	1.95
32916054--32916478	200	2.1	200	90	0	672	22	21	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32928656--32928831	29	6.0	30	71	20	122	36	2	27	33	1.69
32928680--32928912	59	3.9	58	78	9	179	35	4	27	33	1.77
32928761--32928854	29	3.2	30	74	16	90	30	3	29	36	1.73
32929981--32930028	26	1.9	26	87	8	73	41	6	0	52	1.27
32930005--32930050	19	2.5	19	89	3	67	43	4	0	52	1.21
32930039--32930064	3	8.7	3	100	0	52	30	0	0	69	0.89
32933814--32933938	42	3.0	42	77	2	117	21	24	23	31	1.98
32934774--32934834	28	2.2	28	80	8	72	62	1	1	34	1.15
32937237--32937288	18	3.0	18	86	10	65	53	0	0	46	1.00
32938330--32938400	3	23.7	3	94	0	124	32	2	0	64	1.08
32939550--32939612	30	2.2	28	80	8	72	33	6	28	31	1.82
32939565--32939917	29	12.0	29	77	7	284	33	3	26	35	1.74
32939566--32939910	117	2.9	116	82	6	376	34	3	26	35	1.75
32939562--32939898	59	5.8	58	76	9	258	33	3	27	35	1.75
32941555--32941592	19	2.0	19	94	0	67	10	18	36	34	1.85
32941784--32941844	17	3.5	17	86	2	77	54	1	1	42	1.20
32941784--32941844	6	10.5	6	72	13	56	54	1	1	42	1.20
32942485--32943009	92	5.7	92	96	0	935	32	20	15	32	1.94
32950544--32950591	21	2.3	21	85	0	69	10	29	8	52	1.65
32954350--32954543	98	2.0	98	81	4	232	40	13	19	27	1.88
32954898--32954958	28	2.1	29	81	6	79	29	8	22	39	1.83
32955065--32955224	29	5.4	29	73	14	123	36	3	23	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32955081--32955229	59	2.5	58	83	7	192	35	3	24	36	1.72
32955081--32955316	30	8.0	29	73	10	158	36	3	22	37	1.73
32955081--32955293	59	3.6	60	78	6	175	35	3	23	37	1.73
32956784--32956863	29	2.7	29	79	13	90	30	10	20	40	1.85
32957204--32957275	11	6.2	11	76	12	56	52	1	1	44	1.18
32957191--32957276	17	5.2	17	81	9	88	50	2	1	46	1.21
32957201--32957278	6	13.2	6	76	12	81	53	1	1	43	1.16
32957201--32957289	17	5.4	17	85	9	112	53	2	1	42	1.20
32959203--32959268	31	2.1	31	85	0	87	31	12	7	48	1.68
32964704--32964755	15	3.4	15	68	5	50	30	7	11	50	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163