genome.fa.s8.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  35  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9301904--9301976	28	2.5	28	86	4	110	47	23	13	15	1.80
9303514--9303825	162	1.9	163	84	4	425	25	17	12	44	1.83
9303926--9304071	30	4.9	29	78	5	114	39	23	2	34	1.69
9303924--9304060	61	2.3	59	80	8	152	40	21	2	35	1.68
9304044--9304240	59	3.4	58	73	2	198	29	31	4	35	1.76
9316033--9316983	76	12.7	76	89	4	1379	33	15	18	32	1.92
9315884--9316983	152	7.4	152	88	5	1459	33	15	18	31	1.93
9315884--9316983	296	3.7	296	90	3	1610	33	15	18	31	1.93
9317223--9317293	31	2.4	29	88	4	97	39	4	0	56	1.19
9317221--9317291	11	6.5	11	73	15	58	39	4	0	56	1.19
9317270--9317304	17	2.1	17	88	0	52	45	2	0	51	1.16
9317343--9317415	28	2.5	28	93	4	119	49	24	12	13	1.77
9317350--9317400	13	3.8	13	71	19	50	47	25	15	11	1.80
9317367--9317417	15	3.5	15	72	20	54	45	27	11	15	1.81
9317539--9317577	20	2.0	20	90	10	62	23	51	12	12	1.74
9318957--9319261	161	1.9	161	85	4	427	24	18	11	44	1.83
9319359--9319546	30	6.3	30	85	5	240	38	21	4	35	1.73
9319359--9319562	60	3.4	59	87	6	270	37	23	4	34	1.75
9337665--9337721	21	2.7	21	80	2	60	21	14	28	36	1.92
9341728--9341795	29	2.3	30	82	9	86	30	10	4	54	1.54
9347054--9347093	15	2.7	15	84	0	53	35	20	5	40	1.74
9350935--9350960	3	8.7	3	100	0	52	0	30	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9360785--9360856	30	2.4	30	86	6	92	20	12	19	47	1.82
9361325--9361366	13	3.3	13	73	6	50	23	0	2	73	0.94
9361314--9361366	25	2.2	25	96	3	99	24	0	3	71	1.02
9370439--9370473	17	1.9	19	88	11	56	57	2	5	34	1.37
9379843--9379882	17	2.4	16	83	4	53	67	2	0	30	1.04
9384338--9384367	13	2.3	13	100	0	60	60	10	6	23	1.52
9389607--9389654	16	2.8	17	87	6	62	37	2	2	58	1.22
9389646--9389673	13	2.2	13	100	0	56	50	0	0	50	1.00
9393517--9393640	58	2.2	56	84	9	155	34	1	5	58	1.32
9393471--9393658	58	3.3	57	73	15	147	36	1	4	57	1.30
9393770--9393823	15	3.6	14	75	9	54	20	0	11	68	1.19
9394295--9394319	6	4.2	6	100	0	50	48	0	36	16	1.46
9397532--9397571	21	1.9	21	100	0	80	40	15	25	20	1.90
9402110--9402176	31	2.2	30	84	10	82	25	19	8	46	1.79
9402430--9402589	31	5.3	30	67	11	87	47	10	16	25	1.78
9412009--9412052	22	2.0	22	100	0	88	45	9	13	31	1.75
9412667--9412719	20	2.7	20	93	0	88	50	5	18	24	1.68
9424119--9424177	26	2.2	28	79	11	70	64	0	0	35	0.94
9425624--9425714	28	3.2	28	77	14	105	38	4	28	28	1.76
9425592--9425902	59	5.3	59	87	4	396	34	2	28	34	1.71
9425631--9425904	29	9.3	29	67	24	130	33	2	29	35	1.70
9425680--9425971	29	10.0	29	67	17	108	31	2	28	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9425858--9425913	30	1.9	28	85	7	76	30	0	33	35	1.58
9425581--9425960	118	3.3	115	80	8	390	33	3	27	35	1.73
9426929--9427032	6	18.0	6	73	18	87	55	0	0	42	1.12
9426913--9427032	17	7.3	17	82	11	124	53	1	0	44	1.16
9426929--9427032	11	9.0	11	72	16	77	55	0	0	42	1.12
9427344--9427933	76	8.0	76	86	5	859	32	19	14	33	1.92
9427344--9427933	221	2.7	221	86	5	829	32	19	14	33	1.92
9427344--9427932	297	2.0	296	95	0	1052	32	19	14	33	1.92
9439913--9440165	30	8.6	29	68	17	128	33	2	29	35	1.71
9439914--9440165	59	4.3	59	90	2	389	33	2	29	34	1.71
9439955--9440193	29	8.1	29	68	20	138	30	2	30	36	1.69
9439914--9440216	118	2.6	118	84	3	315	32	3	29	34	1.74
9441414--9441460	21	2.2	21	88	0	67	42	10	2	44	1.51
9442210--9442279	6	12.0	6	70	22	51	54	1	1	42	1.18
9442212--9442273	10	6.0	10	75	20	56	56	0	1	41	1.09
9442210--9442267	17	3.7	16	79	11	66	55	0	1	43	1.10
9445928--9446081	48	3.1	48	62	18	118	44	22	9	22	1.82
9445894--9446091	99	2.0	99	100	0	396	46	22	9	22	1.79
9448564--9448610	22	2.1	22	100	0	94	63	6	12	17	1.48
9456757--9456804	21	2.2	21	85	10	62	52	27	2	18	1.57
9458164--9458261	48	2.0	48	96	0	178	44	6	12	36	1.67
9465956--9466053	10	10.3	10	69	20	59	34	5	2	58	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9466315--9466344	15	2.0	15	93	0	51	56	0	0	43	0.99
9466853--9466926	29	2.5	29	86	4	94	50	16	13	20	1.78
9467621--9467677	28	2.0	28	93	0	96	49	8	12	29	1.70
9467975--9468005	15	2.1	15	93	0	53	70	0	0	29	0.87
9473935--9473968	17	2.0	17	94	0	59	52	2	0	44	1.16
9474675--9474703	14	2.0	15	93	6	51	51	0	0	48	1.00
9475060--9475102	18	2.4	18	88	7	61	53	0	0	46	1.00
9493020--9493069	15	3.3	15	74	23	50	18	16	8	58	1.62
9493775--9493805	11	2.7	11	95	5	53	83	0	9	6	0.79
9494801--9494845	22	2.0	23	82	4	56	55	0	8	35	1.31
9495710--9495777	26	2.6	25	79	4	73	58	4	1	35	1.27
9498318--9498343	7	3.7	7	100	0	52	46	0	0	53	1.00
9498320--9498367	24	2.0	25	83	4	62	39	6	2	52	1.39
9499931--9500003	11	6.5	11	75	13	51	82	0	5	12	0.83
9499898--9499987	12	6.9	13	79	8	69	80	0	6	13	0.91
9499924--9499996	30	2.5	28	85	12	101	82	0	5	12	0.83
9499918--9499987	6	10.8	6	87	6	59	81	0	5	12	0.86
9499895--9500003	34	3.1	35	82	11	120	81	0	7	11	0.87
9499898--9500005	47	2.4	46	81	7	123	80	0	8	11	0.90
9499955--9500005	8	6.0	8	78	19	50	84	0	9	5	0.78
9501372--9501455	39	2.2	39	86	0	114	25	26	19	29	1.98
9501691--9501889	85	2.3	85	81	0	227	37	16	23	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9501691--9501925	85	2.8	85	78	1	211	36	14	23	25	1.93
9501513--9502154	294	2.2	294	86	1	912	37	17	22	23	1.94
9501987--9502154	85	2.0	85	84	2	221	36	17	22	22	1.94
9501775--9502361	209	2.8	209	88	0	843	36	16	22	24	1.94
9502198--9502354	86	1.8	85	82	4	199	37	15	21	25	1.93
9503744--9503782	6	6.5	6	85	11	53	20	30	0	48	1.50
9507407--9507435	9	3.0	10	90	10	51	10	0	0	89	0.48
9507456--9507500	19	2.4	19	81	7	56	37	0	4	57	1.19
9512286--9512496	111	1.9	113	88	5	320	29	11	3	55	1.51
9516753--9516835	24	3.2	24	78	15	94	46	4	7	40	1.52
9522046--9522337	30	9.8	30	82	7	240	41	3	21	33	1.69
9522087--9522317	60	3.8	60	85	4	270	42	1	21	34	1.63
9522086--9522337	90	2.8	91	82	8	302	42	1	21	34	1.64
9524505--9525180	78	8.7	77	82	3	732	26	19	30	24	1.98
9524528--9525180	234	2.8	234	85	3	859	26	19	29	24	1.98
9524569--9525161	39	15.2	39	72	2	348	26	19	30	23	1.98
9533695--9533732	14	2.5	16	83	12	53	23	2	10	63	1.39
9533698--9533732	15	2.4	15	90	4	54	22	2	8	65	1.34
9533982--9534037	14	4.0	14	76	13	53	26	0	5	67	1.11
9535655--9535744	29	3.1	29	74	1	74	58	0	7	33	1.26
9535731--9535947	40	5.4	40	65	13	113	57	2	6	33	1.38
9535656--9535983	162	2.0	162	99	0	647	57	2	6	33	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9537197--9537230	6	5.7	6	100	0	68	35	32	0	32	1.58
9537427--9537466	20	2.0	20	95	0	71	25	7	10	57	1.57
9538737--9539077	30	11.7	29	68	24	154	36	2	26	33	1.71
9538732--9539101	58	6.3	59	90	3	534	35	2	27	33	1.71
9538732--9539101	117	3.2	116	87	4	521	35	2	27	33	1.71
9540989--9541047	6	9.8	6	73	14	50	54	1	5	38	1.33
9541005--9541031	14	1.9	14	100	0	54	51	0	11	37	1.37
9541370--9542237	92	9.4	92	95	0	1495	27	16	20	36	1.93
9541838--9542241	40	8.8	47	61	22	117	28	14	19	36	1.92
9554313--9554740	29	14.7	29	66	24	165	35	3	28	32	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163