genome.fa.s8.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  94  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26827019--26827052	12	2.8	13	82	17	54	73	0	26	0	0.83
26827365--26827566	94	2.2	94	81	4	230	33	20	6	38	1.80
26827509--26827674	71	2.4	69	81	6	199	34	17	5	42	1.72
26827783--26827814	6	5.3	6	96	0	55	65	0	0	34	0.93
26827801--26827958	68	2.3	67	85	8	178	47	5	8	39	1.55
26827826--26827959	68	2.0	69	89	4	209	46	4	8	40	1.56
26833085--26833177	47	2.0	47	89	0	141	21	22	15	40	1.90
26836764--26836870	32	3.2	32	70	17	90	28	16	27	27	1.97
26836777--26836898	37	3.4	37	73	13	130	31	13	27	27	1.94
26836760--26836933	69	2.5	69	86	4	253	29	14	28	28	1.95
26836796--26836931	32	3.9	35	70	18	99	30	11	27	30	1.92
26836709--26836991	33	8.4	31	70	15	145	30	14	25	28	1.95
26842550--26842633	28	3.0	28	86	8	107	34	17	17	29	1.94
26842550--26842662	28	4.0	28	81	5	102	32	15	18	32	1.93
26842651--26842737	27	3.2	28	70	6	72	31	11	19	37	1.87
26842659--26842761	54	1.9	54	82	7	129	28	16	17	37	1.91
26844226--26844292	34	2.0	34	87	0	98	32	11	14	40	1.83
26845393--26845424	13	2.5	13	94	0	55	34	15	9	40	1.80
26845443--26845477	4	8.8	4	93	0	61	48	22	0	28	1.51
26850526--26850575	21	2.3	22	80	16	68	32	2	6	60	1.32
26852004--26852226	43	5.3	43	90	3	355	21	31	21	25	1.98
26852004--26852226	84	2.6	85	90	4	353	21	31	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26854444--26854476	16	2.1	17	88	11	52	30	6	0	63	1.18
26855597--26855776	41	4.3	42	84	4	213	23	23	22	31	1.99
26861322--26861364	20	2.2	20	82	0	50	41	6	2	48	1.43
26866685--26866772	34	2.6	34	80	12	99	54	12	9	23	1.66
26870621--26870901	136	2.1	135	94	2	499	28	29	14	26	1.96
26871446--26871637	81	2.4	81	83	6	212	32	27	15	23	1.95
26871485--26871642	81	2.0	81	88	5	239	32	25	17	25	1.97
26881970--26882213	42	5.7	42	84	6	285	26	26	9	38	1.86
26881997--26882060	23	3.0	23	65	23	57	26	23	9	40	1.85
26881929--26882242	42	7.4	42	80	7	278	26	27	10	36	1.88
26886402--26886445	14	2.8	16	86	10	56	63	4	2	29	1.26
26889242--26889290	16	2.9	17	82	11	57	69	0	6	24	1.11
26890877--26890957	29	2.9	28	79	1	99	55	7	14	22	1.64
26891199--26891223	13	1.9	13	100	0	50	16	36	24	24	1.94
26893463--26893510	15	3.3	14	77	8	51	72	18	0	8	1.08
26895049--26895111	29	2.2	28	78	13	67	19	17	1	61	1.42
26894879--26895446	283	2.0	279	96	2	1050	23	14	2	59	1.47
26895437--26895481	17	2.6	18	82	7	56	28	2	0	68	1.01
26895315--26897343	685	3.0	684	95	1	3559	30	13	9	46	1.75
26900318--26900351	10	3.3	10	87	4	50	85	0	14	0	0.60
26901317--26901371	7	8.3	7	86	9	71	78	0	21	0	0.76
26901314--26901370	13	4.4	13	82	8	64	77	0	22	0	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26901309--26901373	26	2.5	26	85	11	89	80	0	20	0	0.72
26901305--26901373	7	9.7	7	74	14	61	81	0	18	0	0.70
26904603--26904632	14	2.1	14	100	0	60	30	6	13	50	1.67
26904815--26904845	16	1.9	16	93	0	53	51	0	0	48	1.00
26906859--26906894	9	4.0	9	89	10	56	66	8	2	22	1.31
26906861--26906894	17	1.9	18	94	5	61	67	5	2	23	1.26
26907978--26908054	30	2.7	28	79	13	86	50	2	0	46	1.15
26907985--26908043	31	1.9	31	86	6	84	49	3	0	47	1.18
26913267--26913317	21	2.4	21	80	0	57	29	7	11	50	1.67
26914121--26914171	21	2.4	21	86	0	75	27	7	13	50	1.69
26914917--26914967	21	2.4	21	86	0	75	27	7	13	50	1.69
26915409--26915533	24	5.3	23	71	15	94	28	16	22	32	1.96
26915409--26915552	47	3.1	47	87	2	209	29	15	22	32	1.95
26915476--26915550	24	3.1	23	69	17	55	29	14	25	30	1.95
26915561--26915763	30	6.9	30	69	12	116	27	25	21	26	1.99
26915683--26915744	14	4.3	15	74	15	58	24	29	22	24	1.99
26915644--26915764	43	2.8	43	79	3	118	27	27	19	25	1.99
26915782--26915813	12	2.4	14	90	10	50	15	25	28	31	1.96
26915860--26915930	28	2.5	29	86	4	92	25	14	25	35	1.93
26916122--26916162	21	2.0	21	95	0	73	41	14	12	31	1.83
26918310--26918386	23	3.3	23	90	0	118	29	23	9	37	1.86
26919134--26919181	21	2.3	21	96	0	87	18	25	12	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26921247--26921271	2	12.5	2	100	0	50	48	0	0	52	1.00
26921511--26921561	27	2.0	27	85	14	72	29	15	5	49	1.68
26921591--26921672	38	2.3	35	81	12	94	29	6	3	60	1.37
26921660--26921702	18	2.5	17	82	14	52	25	2	0	72	0.97
26921657--26921705	19	2.6	18	78	18	55	26	4	0	69	1.06
26923317--26923482	58	2.8	57	76	16	162	36	4	28	30	1.76
26923314--26923507	58	3.3	58	76	11	148	37	4	28	29	1.76
26925656--26926069	58	7.2	58	78	11	383	36	3	28	31	1.74
26925874--26925966	29	3.2	30	69	26	90	32	2	29	36	1.69
26925716--26926069	115	3.1	112	81	10	387	36	3	28	31	1.75
26927095--26927152	3	19.0	3	84	10	64	37	1	0	60	1.07
26927120--26927152	3	11.0	3	100	0	66	33	0	0	66	0.92
26927859--26927918	6	10.0	6	75	13	61	55	0	3	41	1.16
26927859--26927929	17	4.4	17	78	10	85	56	1	2	39	1.23
26927861--26927929	11	5.8	12	77	12	54	57	1	2	37	1.22
26931335--26931360	9	2.9	9	100	0	52	34	0	0	65	0.93
26938864--26938931	30	2.3	29	82	12	77	35	2	8	52	1.47
26940171--26940204	17	2.0	17	88	11	52	32	0	2	64	1.08
26940183--26940267	22	3.6	22	70	17	64	27	3	3	65	1.25
26940187--26940267	23	3.5	23	70	21	69	25	3	3	66	1.25
26940182--26940267	47	1.9	44	88	9	129	27	3	3	65	1.25
26941113--26941149	3	12.3	3	100	0	74	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26943624--26943673	22	2.3	22	85	0	64	44	4	16	36	1.66
26947147--26947182	17	2.1	18	89	5	56	41	5	2	50	1.40
26952743--26952776	13	2.5	13	95	4	59	38	0	5	55	1.24
26957696--26957755	27	2.2	27	93	0	102	33	31	21	13	1.92
26967558--26967614	24	2.4	24	90	0	96	36	15	26	21	1.93
26973096--26973229	30	4.5	29	75	7	108	35	7	20	36	1.81
26974954--26975074	42	2.9	42	80	9	131	28	18	24	28	1.98
26974954--26975477	38	12.9	41	69	17	169	25	17	24	32	1.97
26975098--26975300	40	5.2	39	69	20	145	26	17	23	33	1.96
26975117--26975319	38	5.2	38	75	11	205	25	17	21	35	1.95
26975010--26975342	78	4.2	77	83	6	357	24	17	24	32	1.97
26975289--26975394	51	2.1	51	90	0	167	30	14	26	29	1.95
26975211--26975472	129	2.0	129	88	2	393	27	15	25	32	1.95
26975746--26976367	49	12.7	49	72	5	423	21	28	14	34	1.93
26975753--26976363	98	6.2	98	84	1	688	21	29	14	34	1.93
26976577--26976792	112	1.9	116	86	3	314	37	11	20	30	1.88
26977538--26977575	20	1.9	20	89	10	60	31	26	5	36	1.79
26978210--26978661	52	8.7	52	94	0	742	35	27	13	24	1.92
26982820--26982849	16	1.9	16	93	6	53	0	13	0	86	0.57
26985648--26985852	104	2.0	103	85	2	277	36	18	15	29	1.91
26985883--26985914	16	2.0	16	93	0	55	31	0	3	65	1.08
26986163--26986306	73	2.0	73	87	2	209	54	3	20	21	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26986268--26986412	30	4.9	29	86	5	166	36	5	23	34	1.78
26986277--26986410	59	2.2	60	85	6	175	36	5	23	35	1.77
26988117--26988322	89	2.3	89	95	1	369	24	10	13	51	1.72
26990971--26991618	350	1.9	350	96	1	1192	32	14	15	38	1.87
26991912--26991946	18	1.9	18	88	11	54	60	0	5	34	1.21
26993644--26993759	30	3.9	30	80	4	135	34	3	20	41	1.69
26993636--26993759	60	2.1	60	86	3	169	33	4	21	40	1.72
26993646--26993773	60	2.1	60	81	5	143	37	3	18	39	1.70
26994894--26994935	10	4.1	10	84	3	57	23	0	2	73	0.94
26994888--26994933	16	2.8	16	86	3	56	21	2	2	73	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163