genome.fa.s8.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  133  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36364541--36364592	25	2.0	27	81	7	63	50	0	1	48	1.12
36367196--36367332	22	6.1	23	75	5	86	13	22	24	39	1.90
36367232--36367349	22	5.3	22	80	3	128	16	20	26	37	1.93
36367232--36367349	45	2.6	45	78	2	130	16	20	26	37	1.93
36371520--36371564	22	2.0	23	86	8	65	37	4	24	33	1.76
36374116--36374216	23	4.5	22	77	3	94	16	21	22	38	1.93
36374116--36374217	45	2.3	45	81	3	125	16	21	23	38	1.93
36382525--36382609	42	2.0	42	100	0	170	44	9	15	30	1.78
36385122--36385189	34	2.0	34	100	0	136	52	11	11	23	1.70
36392329--36392386	29	1.9	31	86	10	84	43	3	0	53	1.17
36392809--36392842	11	3.3	11	92	8	54	50	0	0	50	1.00
36392809--36392842	10	3.3	10	88	8	50	50	0	0	50	1.00
36393876--36393907	9	3.7	9	95	4	57	46	0	0	53	1.00
36393890--36393958	35	2.0	35	83	8	88	53	2	1	42	1.24
36396841--36396881	15	2.7	16	85	11	59	41	0	0	58	0.98
36405055--36405141	27	3.2	27	79	6	86	37	18	16	27	1.92
36415140--36415174	16	2.2	16	100	0	70	28	20	28	22	1.98
36425090--36425153	18	3.5	17	75	12	56	25	1	3	70	1.11
36425798--36425841	15	2.9	15	80	10	54	56	0	0	43	0.99
36427546--36427589	19	2.2	20	80	11	56	63	4	0	31	1.14
36427594--36427632	19	2.2	18	86	9	53	58	0	0	41	0.98
36427555--36427626	26	2.7	26	75	12	74	56	2	0	40	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36427560--36427634	9	8.4	9	71	20	52	56	2	0	41	1.13
36427600--36427642	18	2.3	19	80	8	52	55	0	0	44	0.99
36430751--36430796	24	1.9	24	86	8	67	30	2	0	67	1.03
36430957--36431164	111	1.9	111	95	0	380	35	28	8	27	1.86
36431951--36431987	11	2.9	14	76	23	53	35	0	5	59	1.20
36431951--36432012	26	2.4	26	84	7	65	38	0	6	54	1.26
36432415--36432444	15	2.0	15	100	0	60	0	60	0	40	0.97
36432721--36432768	16	2.9	16	84	6	51	41	4	0	54	1.20
36433045--36433095	23	2.2	23	86	6	68	5	21	21	50	1.69
36436252--36436294	20	2.1	20	82	4	50	13	18	16	51	1.77
36437719--36437769	20	2.5	21	78	15	54	56	5	9	27	1.54
36444848--36444995	26	5.7	26	89	0	188	29	22	20	26	1.99
36444845--36444989	78	1.8	79	86	1	211	31	22	20	26	1.98
36446809--36447034	59	3.8	59	79	6	190	38	5	24	31	1.78
36446809--36446968	29	5.5	30	70	19	97	35	5	26	32	1.80
36446986--36447174	29	6.5	29	77	12	122	34	5	24	35	1.78
36446927--36447075	59	2.6	58	77	9	151	40	4	22	32	1.73
36447009--36447182	29	6.0	27	78	12	125	33	4	26	35	1.77
36449189--36449242	16	3.3	16	84	2	63	51	1	1	44	1.22
36449899--36449956	29	2.0	30	80	12	77	50	0	0	50	1.00
36449925--36449966	20	2.0	22	90	9	70	52	0	0	47	1.00
36449916--36449972	20	3.0	20	74	23	59	47	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36450722--36451826	45	25.3	45	84	5	1398	43	17	5	34	1.71
36450722--36451720	397	2.5	397	91	0	1581	43	17	5	34	1.71
36451386--36451460	37	2.2	33	80	17	105	41	18	6	33	1.77
36452318--36452496	28	6.3	28	79	3	189	50	12	17	19	1.77
36452318--36452496	57	3.2	56	81	5	207	50	12	17	19	1.77
36453437--36453563	33	3.9	33	79	14	113	48	14	3	33	1.60
36453483--36453539	29	2.0	29	86	6	80	50	14	1	33	1.52
36453571--36453638	36	1.9	35	88	5	102	42	14	2	39	1.61
36454826--36454891	34	2.1	31	88	11	98	31	18	18	31	1.95
36457843--36458011	45	3.8	45	84	1	205	42	15	6	35	1.73
36457843--36458011	90	1.9	90	85	2	232	42	15	6	35	1.73
36457941--36458085	74	2.0	74	88	0	218	43	16	4	35	1.69
36458015--36458130	45	2.6	45	88	0	160	45	16	5	32	1.69
36457913--36458130	119	1.8	119	89	2	339	42	16	5	34	1.73
36462697--36462724	8	3.5	8	100	0	56	39	0	0	60	0.97
36467082--36467127	20	2.2	21	92	7	76	43	2	0	54	1.12
36466967--36467297	144	2.2	147	89	6	499	48	9	0	41	1.40
36467107--36467197	34	2.7	34	80	0	110	47	8	1	42	1.41
36467240--36467281	20	2.2	18	91	8	66	40	0	0	59	0.97
36467175--36467333	70	2.3	70	89	4	232	47	5	0	46	1.26
36467267--36467358	26	3.6	26	69	17	84	51	10	0	38	1.37
36467293--36467331	12	3.1	12	92	7	60	51	2	0	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36467258--36467355	52	1.9	51	95	2	178	50	10	0	39	1.37
36467031--36467496	192	2.3	204	87	9	638	48	8	0	42	1.37
36467378--36467804	154	2.7	154	93	3	705	47	8	0	43	1.37
36467586--36467627	20	2.2	18	91	8	66	40	0	0	59	0.97
36466967--36467650	346	2.0	344	89	7	1044	48	9	0	41	1.40
36467608--36467695	34	2.6	33	82	5	104	46	10	1	42	1.45
36467725--36467788	18	3.2	20	82	13	87	40	3	0	56	1.15
36473838--36474087	43	5.8	43	76	8	224	26	18	25	29	1.98
36473815--36474081	86	3.1	85	80	7	263	27	17	26	28	1.98
36473838--36474075	129	1.9	128	84	9	324	28	18	25	28	1.98
36475303--36475328	12	2.2	12	100	0	52	34	11	7	46	1.69
36475974--36476016	15	2.8	14	83	16	50	32	0	2	65	1.06
36475941--36476106	80	2.1	78	83	7	203	46	0	1	52	1.08
36477412--36477458	25	2.0	23	87	8	67	59	6	2	31	1.34
36477969--36478078	29	3.7	29	70	19	93	25	10	10	53	1.67
36477969--36478074	31	3.6	28	78	11	97	26	10	7	55	1.60
36478025--36478094	31	2.2	31	84	2	86	27	12	8	51	1.69
36479723--36479765	5	7.8	5	85	14	50	74	0	4	20	1.00
36479720--36479765	12	4.1	11	81	15	58	73	0	4	21	1.00
36479723--36479765	17	2.6	16	88	7	59	74	0	4	20	1.00
36482991--36483080	17	5.4	16	75	7	56	35	4	6	53	1.47
36485068--36485234	30	5.7	29	74	12	137	34	24	2	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36485064--36485322	59	4.4	58	79	11	226	34	25	1	38	1.65
36485068--36485345	118	2.4	115	76	12	253	34	24	2	38	1.67
36490335--36490380	11	4.3	10	81	13	56	82	0	13	4	0.81
36490335--36490380	21	2.1	21	84	11	58	82	0	13	4	0.81
36491325--36491621	97	3.1	96	95	0	513	38	21	26	13	1.90
36491371--36491880	242	2.1	242	90	1	815	38	21	26	13	1.91
36491419--36492139	97	7.4	97	83	6	587	38	20	25	16	1.92
36491320--36492209	49	18.2	50	73	8	609	38	20	25	15	1.92
36492423--36492530	39	2.8	39	84	5	146	22	27	21	28	1.99
36492501--36492604	36	2.8	37	82	10	115	25	30	19	24	1.98
36492537--36492607	36	2.0	36	91	5	117	26	35	16	21	1.95
36493138--36493230	17	5.6	16	78	6	87	36	4	6	52	1.47
36493136--36493246	6	19.5	6	71	16	58	40	4	5	49	1.46
36495220--36495466	29	8.4	28	68	17	146	31	24	4	40	1.74
36495216--36495428	116	1.8	117	84	7	290	32	24	3	38	1.72
36495211--36495466	58	4.4	57	78	8	230	32	24	3	39	1.73
36501908--36502071	43	3.8	41	79	8	150	29	17	26	26	1.98
36502048--36502093	24	1.9	24	90	0	74	36	15	30	17	1.91
36502012--36502136	66	1.9	67	86	1	180	32	20	25	22	1.98
36502074--36502236	43	3.8	43	80	0	193	27	20	25	25	1.99
36502289--36502439	42	3.6	43	82	1	171	25	19	27	27	1.99
36505998--36506038	18	2.3	18	86	0	55	58	9	7	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36507420--36507451	16	2.1	16	94	5	57	46	0	6	46	1.27
36507424--36507566	60	2.4	60	81	8	175	43	2	6	47	1.43
36509086--36509367	139	2.0	139	99	0	555	34	15	19	30	1.93
36509794--36509840	22	2.2	21	84	3	58	70	2	8	19	1.24
36511288--36511485	104	1.9	104	82	3	245	26	24	11	37	1.89
36512220--36512265	18	2.7	17	80	9	58	76	0	6	17	1.00
36515012--36515073	22	2.9	22	83	7	74	69	0	11	19	1.18
36516405--36516695	30	9.8	29	72	10	117	33	4	26	35	1.76
36516405--36516508	29	3.6	29	77	6	111	32	6	26	33	1.83
36516518--36516690	30	5.8	29	77	10	154	34	1	27	37	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163