genome.fa.s8.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  122  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33688638--33688681	16	2.8	17	83	10	58	63	2	0	34	1.07
33699663--33699725	31	2.0	31	84	6	83	26	7	20	44	1.79
33705640--33705669	14	2.1	14	93	0	51	63	0	36	0	0.95
33706405--33706438	6	5.7	6	85	0	50	47	0	47	5	1.26
33707309--33707376	30	2.3	29	85	12	86	50	4	4	41	1.42
33713314--33713378	34	1.9	34	84	6	87	20	3	18	58	1.52
33714819--33714860	20	2.1	20	100	0	84	23	26	11	38	1.90
33717117--33717159	3	14.3	3	95	0	77	0	30	0	69	0.88
33734260--33734540	30	9.5	29	66	25	103	34	3	28	33	1.73
33734260--33734569	59	5.3	59	84	5	394	34	3	28	33	1.75
33734536--33734601	32	2.1	32	91	2	107	27	4	25	42	1.74
33734284--33734606	31	10.9	30	67	20	126	33	3	28	34	1.73
33736507--33736595	6	15.0	6	69	19	62	51	2	3	42	1.30
33736509--33736596	17	5.0	17	76	12	61	53	2	3	40	1.30
33737920--33737985	27	2.4	27	78	11	73	60	1	1	36	1.15
33742880--33743035	85	1.8	85	84	2	215	41	10	26	21	1.85
33745667--33745693	2	13.5	2	100	0	54	0	0	48	51	1.00
33756637--33756685	24	2.0	24	84	0	62	55	8	6	30	1.54
33758166--33758218	27	2.0	26	82	10	63	52	3	1	41	1.30
33760024--33760353	105	3.1	105	85	1	401	30	26	12	30	1.92
33762759--33762791	16	2.0	17	88	5	50	51	0	0	48	1.00
33765063--33765106	22	2.0	21	87	12	63	25	18	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33766036--33766481	105	4.3	103	76	6	378	30	25	13	31	1.93
33765970--33766481	210	2.4	210	79	5	493	30	25	13	31	1.93
33766727--33767354	314	2.0	315	91	1	1010	37	24	13	25	1.91
33774677--33774749	3	24.0	3	85	2	101	35	2	0	61	1.10
33776296--33776628	165	2.0	165	97	0	630	30	28	15	25	1.96
33785428--33785678	58	4.3	58	85	5	353	35	5	27	31	1.79
33785428--33785678	29	8.6	28	69	9	153	35	5	27	31	1.79
33785660--33785771	30	3.7	30	92	4	165	33	3	25	36	1.74
33785428--33785707	58	4.8	57	82	6	234	34	5	27	32	1.79
33785672--33785771	30	3.3	30	94	2	166	34	4	23	39	1.73
33785838--33786186	161	2.2	161	86	5	474	44	14	16	24	1.84
33786756--33786790	6	5.8	6	93	0	61	48	0	0	51	1.00
33787265--33787295	15	2.1	15	100	0	62	12	12	54	19	1.70
33787467--33787559	17	5.5	16	76	17	73	50	2	3	44	1.30
33787483--33787559	11	6.8	11	73	10	66	50	2	3	42	1.34
33787849--33788489	68	9.4	68	95	0	1104	27	20	17	34	1.95
33800444--33800640	59	3.4	58	83	4	270	36	5	27	31	1.79
33800547--33800759	30	7.2	29	76	13	118	37	3	22	36	1.71
33800444--33800669	59	3.9	55	78	7	191	35	5	26	32	1.79
33800446--33800699	117	2.2	117	84	6	327	36	4	25	33	1.77
33800634--33800759	60	2.1	59	94	1	216	37	3	19	39	1.70
33800852--33801178	161	2.0	161	87	4	473	44	13	15	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33802501--33802531	16	1.9	16	100	0	62	9	6	58	25	1.54
33802706--33802798	17	5.5	16	76	17	73	50	2	3	44	1.30
33802722--33802798	11	6.8	11	73	10	66	50	2	3	42	1.34
33804339--33804494	79	2.0	79	87	0	222	41	11	11	35	1.78
33805368--33805635	33	8.4	33	85	4	347	16	34	16	32	1.91
33805368--33805635	129	2.1	129	87	2	389	16	34	16	32	1.91
33805527--33805607	15	4.9	16	67	15	58	16	35	16	32	1.90
33805371--33805635	96	2.8	95	88	3	372	16	35	16	32	1.91
33806427--33807082	33	19.9	33	78	5	298	18	17	32	30	1.95
33806436--33806746	66	4.7	66	85	4	351	18	14	33	33	1.91
33806530--33806588	20	3.3	20	62	37	53	15	15	35	33	1.89
33806436--33806779	99	3.5	98	82	3	395	19	13	32	33	1.91
33806794--33807083	66	4.4	66	90	0	411	18	23	32	26	1.97
33806721--33807083	132	2.8	132	81	3	338	19	21	31	27	1.97
33813341--33813386	2	23.0	2	100	0	92	50	0	50	0	1.00
33818683--33818809	28	4.5	28	80	3	148	46	10	16	26	1.79
33818683--33818809	56	2.3	56	85	0	173	46	10	16	26	1.79
33818775--33818883	29	3.9	27	75	12	87	47	6	15	30	1.70
33818839--33818883	14	3.1	14	81	6	54	44	4	17	33	1.69
33818812--33818880	15	4.9	15	74	12	65	44	5	17	31	1.72
33820177--33820237	31	2.0	31	100	0	122	42	9	22	24	1.84
33821560--33821612	11	4.8	11	90	0	70	22	22	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33822686--33822728	5	8.4	5	82	12	52	18	0	2	79	0.85
33822800--33822861	26	2.3	26	81	15	65	33	3	6	56	1.41
33825389--33825598	30	7.1	28	75	10	170	38	24	1	35	1.64
33825386--33825613	59	3.8	59	84	7	250	36	25	1	36	1.66
33825639--33825696	27	2.1	27	83	3	71	27	10	3	58	1.47
33826521--33826555	12	2.9	12	91	0	61	14	5	11	68	1.37
33826511--33826594	12	7.3	12	78	8	59	10	7	14	67	1.40
33826520--33826615	44	2.2	44	82	0	111	10	7	16	65	1.44
33829489--33829535	10	4.8	10	76	5	51	57	19	2	21	1.51
33833653--33833702	18	2.8	19	76	11	52	20	6	2	72	1.16
33833900--33833960	23	2.6	24	89	2	88	19	0	6	73	1.04
33834266--33834313	21	2.2	23	78	14	57	29	6	20	43	1.76
33835694--33835741	21	2.4	19	80	16	53	33	4	0	62	1.14
33837131--33837160	12	2.5	12	94	0	51	66	0	0	33	0.92
33838185--33838424	117	2.0	118	99	0	473	50	8	5	35	1.57
33847755--33847802	4	12.0	4	86	0	51	29	6	0	64	1.18
33850875--33850958	42	2.0	42	90	4	134	29	0	22	47	1.52
33852000--33852139	28	5.0	27	76	6	129	31	15	20	33	1.93
33851999--33852163	55	3.0	55	86	6	226	30	15	20	34	1.93
33852005--33852157	83	1.8	83	80	5	184	28	16	20	35	1.94
33852123--33852189	27	2.5	28	82	7	84	26	14	20	37	1.92
33853698--33853753	15	3.6	16	76	9	53	62	3	0	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33864793--33865185	157	2.5	157	81	2	491	29	22	23	24	1.99
33884268--33884408	52	2.7	52	84	3	194	31	26	14	26	1.95
33885662--33885797	39	3.5	38	78	4	146	36	16	22	25	1.95
33885662--33885840	78	2.3	79	83	3	220	36	17	20	25	1.94
33893862--33894041	91	2.0	91	97	0	342	27	7	27	37	1.83
33898577--33898677	50	2.0	50	88	3	150	55	7	0	35	1.36
33906289--33906327	18	2.2	18	86	4	53	71	0	0	28	0.86
33906356--33906416	23	2.7	22	77	5	68	49	4	0	45	1.23
33915672--33915711	21	1.9	21	89	0	62	52	12	10	25	1.70
33917211--33917251	14	2.9	14	79	13	57	46	4	7	41	1.53
33920074--33920154	24	3.4	24	87	0	117	50	8	13	27	1.70
33923821--33924078	129	2.0	129	93	1	437	30	17	10	41	1.83
33930074--33930104	10	3.1	10	100	0	62	29	0	29	41	1.56
33934932--33934972	19	2.2	20	83	16	52	14	14	2	68	1.32
33935101--33935140	18	2.2	18	86	0	53	60	0	2	37	1.11
33935786--33935839	3	18.0	3	96	0	99	31	0	1	66	1.02
33936056--33936131	29	2.5	30	83	10	84	32	9	13	44	1.75
33936111--33936171	31	2.0	31	86	0	86	40	11	8	39	1.71
33936742--33936820	31	2.6	30	86	6	97	37	11	10	40	1.75
33936745--33936820	29	2.5	29	85	6	89	38	11	10	39	1.77
33936995--33937053	29	2.0	30	90	3	93	52	16	3	27	1.60
33941879--33941916	3	12.7	3	100	0	76	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33942464--33942510	24	2.0	24	86	0	67	23	8	8	59	1.54
33942785--33942824	18	2.2	19	86	13	57	35	7	0	57	1.27
33944780--33944830	18	2.9	17	81	16	52	52	0	5	41	1.25
33952281--33952593	43	7.3	43	86	5	420	28	29	19	23	1.98
33952281--33952593	129	2.4	129	95	2	558	28	29	19	23	1.98
33955671--33955931	41	6.4	41	86	4	332	16	29	22	31	1.96
33955735--33955849	24	5.4	24	62	26	69	15	30	24	29	1.96
33956278--33956387	53	2.1	53	100	0	220	38	18	3	40	1.68
33956452--33956494	16	2.6	18	82	17	58	58	0	0	41	0.98
33957874--33957900	12	2.2	12	100	0	54	33	0	37	29	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163