genome.fa.s8.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  67  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17406765--17406935	84	2.0	84	100	0	342	35	11	9	42	1.75
17414418--17414452	18	1.9	18	94	0	61	68	0	0	31	0.90
17415760--17415827	26	2.6	25	73	17	66	30	16	23	29	1.96
17423170--17423214	17	2.6	17	78	0	54	22	17	8	51	1.73
17435576--17435773	29	6.9	26	69	20	94	35	3	29	31	1.73
17435576--17435738	28	5.7	27	69	19	82	35	3	28	32	1.73
17435547--17435767	58	3.8	59	80	6	238	34	2	29	32	1.72
17435553--17435767	115	1.9	116	84	3	292	35	2	29	32	1.72
17435620--17435806	29	6.5	28	71	18	118	32	2	30	34	1.72
17436136--17436160	10	2.5	10	100	0	50	68	0	0	32	0.90
17437161--17437212	24	2.2	23	86	10	70	25	5	23	46	1.74
17437589--17437635	23	2.0	24	87	4	69	44	0	2	53	1.12
17438017--17438211	86	2.3	87	83	1	241	21	25	19	33	1.97
17438102--17438739	200	3.2	199	86	4	863	21	23	20	34	1.97
17444625--17444652	14	2.0	14	100	0	56	14	28	21	35	1.92
17450900--17450971	29	2.5	30	71	11	51	36	1	27	34	1.66
17450900--17451263	58	6.2	58	77	11	275	35	3	28	32	1.74
17450998--17451264	30	9.1	30	74	19	174	34	3	28	32	1.75
17451187--17451283	30	3.3	29	85	7	92	31	4	26	37	1.76
17452645--17452696	24	2.2	23	90	10	79	26	7	21	44	1.79
17453073--17453119	23	2.0	24	87	4	69	44	0	2	53	1.12
17457720--17457768	25	2.0	25	87	0	71	51	14	0	34	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17463410--17463445	18	2.0	18	88	0	54	41	11	11	36	1.76
17477467--17477508	19	2.2	19	86	4	57	64	2	0	33	1.07
17478362--17478434	29	2.4	31	84	6	87	42	0	2	54	1.14
17478362--17478443	29	2.6	32	79	14	82	45	0	2	52	1.14
17478681--17478736	16	3.4	16	75	22	53	33	0	0	66	0.92
17478698--17478738	17	2.4	16	84	15	55	34	0	0	65	0.93
17480250--17480290	14	2.9	14	85	0	64	46	4	0	48	1.23
17487228--17487269	23	2.0	20	86	13	57	42	2	7	47	1.43
17487502--17487544	24	1.9	23	86	13	63	67	4	16	11	1.38
17487818--17487862	22	2.0	22	95	0	81	46	13	13	26	1.80
17489541--17489567	14	1.9	14	100	0	54	51	14	0	33	1.43
17490870--17490916	18	2.6	18	93	3	76	27	21	27	23	1.99
17494984--17495068	5	17.0	5	75	13	59	44	17	3	34	1.66
17494996--17495062	25	2.7	26	80	13	79	46	19	4	29	1.69
17511385--17511426	16	2.6	16	88	7	59	23	4	30	40	1.75
17511760--17511790	16	1.9	16	100	0	62	35	12	25	25	1.92
17515923--17515975	26	1.9	28	85	11	74	33	1	15	49	1.55
17518038--17518097	17	3.4	17	78	15	59	55	1	3	40	1.27
17518409--17518461	25	2.1	25	100	0	106	37	0	7	54	1.29
17519400--17519446	20	2.5	20	83	10	64	42	0	0	57	0.98
17521149--17521183	17	2.1	16	89	5	52	62	0	0	37	0.95
17534961--17535016	24	2.3	24	100	0	112	33	23	16	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17535102--17535212	46	2.4	46	84	3	134	27	22	9	39	1.86
17535346--17535411	21	3.2	21	82	6	82	43	21	6	28	1.76
17536532--17536561	12	2.6	11	90	10	51	66	3	23	6	1.30
17536841--17536878	19	2.0	19	89	0	58	55	5	0	39	1.23
17542945--17543078	46	2.9	46	81	1	142	27	26	8	38	1.85
17547125--17547201	21	3.7	21	89	0	109	28	10	24	36	1.88
17550706--17550786	28	2.9	28	88	0	126	39	19	16	24	1.91
17551359--17551415	25	2.3	25	79	8	64	17	3	5	73	1.16
17551359--17551416	24	2.4	24	77	11	64	18	3	5	72	1.18
17552867--17552997	61	2.2	57	85	8	165	49	3	3	43	1.36
17552959--17553008	26	1.9	26	84	8	66	46	2	0	52	1.12
17553207--17553244	18	2.0	20	90	10	62	55	15	0	28	1.41
17553603--17553676	31	2.4	31	81	6	78	29	17	9	43	1.81
17554144--17554301	59	2.7	58	81	9	160	45	12	18	24	1.83
17554204--17554315	58	1.9	59	81	5	138	46	10	16	26	1.79
17555350--17555590	39	6.3	38	76	10	215	40	11	20	27	1.87
17555307--17555551	39	6.6	36	74	11	136	39	13	21	26	1.90
17555334--17555551	75	2.9	75	84	0	283	39	12	21	26	1.89
17555637--17555880	93	2.6	93	76	1	247	39	14	21	23	1.91
17555850--17555962	39	2.9	37	75	5	100	44	13	22	20	1.86
17561930--17562076	40	3.7	39	79	3	143	40	19	16	23	1.91
17564412--17564457	23	1.9	23	86	8	65	58	6	2	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17569310--17569517	40	5.2	39	76	5	121	39	20	15	24	1.91
17573109--17573157	22	2.2	22	88	0	71	57	12	2	28	1.46
17573109--17573164	22	2.5	22	82	2	67	55	12	1	30	1.47
17584294--17584533	82	2.9	82	84	3	331	28	22	21	27	1.99
17585297--17585343	2	23.5	2	100	0	94	48	0	0	51	1.00
17588481--17588583	24	4.3	24	91	0	161	25	18	24	32	1.97
17591556--17591602	18	2.6	18	78	18	53	2	17	4	76	1.04
17598308--17598414	37	2.9	37	84	0	133	29	30	15	23	1.96
17598486--17598538	26	2.0	26	85	0	70	28	18	22	30	1.98
17601761--17601818	17	3.4	17	74	6	55	18	18	12	50	1.78
17602853--17602928	37	2.1	37	87	0	107	25	34	19	21	1.96
17602931--17603040	38	3.0	37	79	11	127	33	22	12	30	1.92
17603032--17603082	26	2.0	26	84	0	66	27	19	19	33	1.96
17612328--17612352	12	2.1	12	100	0	50	8	40	0	52	1.31
17615176--17615210	5	7.0	5	86	0	52	22	2	0	74	0.95
17615176--17615210	15	2.3	15	95	0	61	22	2	0	74	0.95
17625655--17625697	19	2.4	18	92	7	70	16	11	11	60	1.59
17625655--17625704	19	2.8	16	80	16	55	14	12	12	62	1.56
17626283--17626339	6	9.7	6	72	24	50	77	0	21	1	0.86
17626284--17626328	18	2.5	18	82	17	58	77	0	20	2	0.87
17626283--17626341	23	2.5	24	86	10	86	74	0	22	3	0.96
17626295--17626339	11	4.1	11	88	8	65	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17651409--17651459	17	2.8	19	76	8	52	9	17	1	70	1.24
17664255--17664281	9	3.0	9	100	0	54	44	0	0	55	0.99
17667111--17667173	14	4.4	14	73	18	51	73	1	4	20	1.11
17677345--17677606	51	5.1	50	87	1	353	32	11	24	32	1.91
17677325--17677606	102	2.8	102	88	0	431	32	12	24	31	1.91
17684079--17684412	51	6.5	51	89	0	481	31	13	23	31	1.93
17690857--17690898	18	2.5	16	85	11	57	16	14	11	57	1.66
17697258--17697338	29	2.8	28	81	10	83	53	4	3	38	1.41
17697296--17697374	36	2.1	37	81	9	90	58	6	3	31	1.41
17699451--17699514	16	4.0	16	67	20	53	21	10	50	17	1.77
17700329--17701046	54	13.3	54	79	5	601	39	13	18	28	1.88
17704135--17704191	26	2.2	25	84	3	69	45	1	14	38	1.55
17704145--17704193	25	1.9	26	91	4	82	42	0	18	38	1.50
17705225--17705256	3	10.7	3	100	0	64	0	0	31	68	0.90
17705780--17705817	15	2.4	17	82	8	53	10	0	28	60	1.30
17706194--17706390	90	2.2	88	81	3	225	29	6	17	46	1.72
17706786--17706866	20	4.1	19	75	10	63	54	11	11	23	1.67
17707029--17707189	42	3.9	40	83	6	164	57	12	9	20	1.63
17707037--17707194	21	7.7	20	67	17	83	58	12	8	20	1.59
17707396--17707456	21	2.9	21	71	9	61	57	14	8	19	1.62
17707361--17707457	42	2.3	42	78	5	99	63	11	9	15	1.50
17707610--17707732	20	6.0	20	70	13	81	52	12	13	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17707611--17707777	42	4.0	41	80	3	140	52	13	11	22	1.72
17707666--17707741	21	3.6	21	72	13	75	51	13	10	25	1.72
17707949--17708142	42	4.7	42	82	3	196	56	12	9	21	1.64
17707943--17708139	21	9.5	21	69	11	102	57	12	9	20	1.62
17708479--17708577	47	2.1	47	87	10	141	41	20	11	27	1.86
17708852--17708892	3	14.3	3	80	19	52	2	34	0	63	1.08
17708852--17708915	14	4.5	14	76	7	58	1	42	0	56	1.09
17710534--17710571	20	1.9	20	84	10	51	31	2	2	63	1.22
17710594--17710624	16	2.0	15	93	6	53	19	9	0	70	1.14
17712995--17713019	13	1.9	13	100	0	50	56	8	0	36	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163