genome.fa.s8.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  132  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35996044--35996213	60	2.8	60	85	6	222	37	19	7	36	1.79
35996044--35996258	30	7.2	30	82	2	182	35	19	7	37	1.81
36005548--36005572	12	2.1	12	100	0	50	28	8	24	40	1.83
36019675--36019715	19	2.1	20	86	4	57	60	4	0	34	1.18
36019993--36020046	28	1.9	28	85	14	76	40	1	0	57	1.09
36019999--36020178	28	6.4	28	67	11	71	37	2	1	58	1.20
36020041--36020218	9	18.9	9	66	12	72	35	2	3	58	1.29
36022932--36022985	27	2.0	28	92	3	92	44	18	5	31	1.73
36026886--36026923	13	2.6	15	84	16	53	42	2	2	52	1.29
36041490--36041541	2	26.0	2	100	0	104	50	0	0	50	1.00
36041613--36041706	10	10.2	9	74	11	84	58	3	1	37	1.21
36041613--36041704	19	4.9	19	77	17	86	57	3	1	38	1.22
36041651--36041717	35	1.9	35	82	11	84	58	4	0	37	1.19
36042475--36042525	22	2.3	21	74	12	50	27	1	3	66	1.20
36049740--36049783	23	1.9	23	85	0	61	34	2	4	59	1.30
36050825--36050886	22	2.8	23	72	18	60	59	1	3	35	1.23
36051581--36051613	16	2.1	16	88	11	50	51	12	6	30	1.63
36055680--36055858	41	4.3	41	86	9	247	21	13	31	33	1.92
36055709--36055881	85	2.1	81	82	11	199	21	13	32	32	1.92
36055810--36055967	53	2.9	52	83	4	199	22	16	33	27	1.95
36066963--36067010	21	2.3	21	85	7	62	41	29	6	22	1.78
36069397--36069444	21	2.3	22	82	10	64	20	4	33	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36079343--36079400	30	2.0	29	86	3	80	43	6	1	48	1.40
36086455--36086494	21	1.9	21	85	10	55	62	10	5	22	1.46
36090189--36090248	26	2.3	26	85	0	75	40	15	3	41	1.63
36095823--36095900	20	4.0	19	69	21	54	32	7	1	58	1.34
36095823--36095865	10	4.3	10	82	11	52	30	6	0	62	1.21
36095817--36095865	19	2.5	20	76	10	55	32	8	0	59	1.27
36095905--36095959	11	5.0	11	75	16	51	43	1	0	54	1.10
36096985--36098369	360	3.8	360	98	0	2671	17	17	19	45	1.86
36104390--36104440	24	2.1	24	85	7	68	60	0	0	39	0.97
36119501--36119551	22	2.3	21	80	9	57	64	3	1	29	1.22
36120283--36120350	35	2.0	34	82	2	82	26	7	1	64	1.28
36120502--36120543	21	2.0	21	85	0	57	28	0	4	66	1.12
36120425--36120550	9	12.9	10	67	19	54	27	3	4	64	1.29
36120426--36120550	19	6.4	19	66	15	60	28	3	4	64	1.30
36128001--36128047	21	2.2	20	78	10	58	12	14	31	40	1.84
36133589--36133768	10	18.3	10	68	16	65	63	3	5	27	1.33
36133629--36133660	17	1.9	16	93	6	55	75	3	3	18	1.08
36133666--36133742	29	2.6	30	79	18	90	59	1	7	31	1.34
36134557--36134597	22	1.9	22	85	5	57	24	2	9	63	1.37
36137153--36137220	31	2.2	31	81	0	73	33	7	7	51	1.58
36139628--36139652	3	8.3	3	100	0	50	64	0	36	0	0.94
36140113--36140443	183	1.8	183	88	1	511	25	22	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36142269--36142580	112	2.8	110	80	5	337	37	13	16	32	1.87
36143850--36143892	23	1.9	23	90	4	70	62	23	9	4	1.44
36146744--36146792	16	2.9	16	78	6	53	69	2	0	28	1.00
36148481--36148514	17	2.1	17	88	5	52	64	0	11	23	1.26
36150409--36150441	15	2.1	16	94	5	59	45	6	3	45	1.43
36151073--36151133	30	2.0	31	90	3	97	39	0	8	52	1.31
36151098--36151140	23	2.0	21	81	9	50	34	0	6	58	1.25
36151572--36151621	25	2.0	25	88	0	73	52	12	0	36	1.39
36152284--36152312	12	2.3	13	94	5	51	41	0	3	55	1.17
36154521--36154608	36	2.4	36	81	7	90	42	17	11	29	1.84
36154705--36155134	23	19.1	23	81	4	482	47	14	4	32	1.64
36159624--36159693	22	3.1	22	81	2	77	15	27	17	40	1.90
36166015--36166078	4	16.8	4	75	12	55	18	1	4	75	1.06
36166015--36166067	24	2.3	22	87	6	70	18	1	3	75	1.05
36166042--36166089	15	3.2	15	80	16	55	18	2	6	72	1.15
36168192--36168220	12	2.3	13	94	5	51	3	20	0	75	0.94
36172269--36172338	22	3.1	22	81	2	77	15	27	17	40	1.90
36178665--36178728	4	16.8	4	75	12	55	18	1	4	75	1.06
36178665--36178717	24	2.3	22	87	6	70	18	1	3	75	1.05
36178692--36178739	15	3.2	15	80	16	55	18	2	6	72	1.15
36184429--36184535	25	4.2	25	83	3	117	34	27	17	20	1.95
36184429--36184535	50	2.1	50	84	1	133	34	27	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36186543--36186655	58	2.0	58	87	1	165	35	18	16	29	1.93
36187948--36187989	21	2.0	21	95	0	75	35	23	7	33	1.82
36190787--36190855	21	3.3	21	87	0	84	39	21	13	26	1.90
36191552--36191706	50	3.1	49	80	3	157	33	25	16	24	1.95
36191552--36191706	25	6.2	25	71	7	91	33	25	16	24	1.95
36193918--36193963	18	2.6	18	79	10	58	63	2	0	34	1.07
36193928--36193979	18	3.0	18	80	8	54	61	3	0	34	1.14
36193918--36193976	17	3.4	16	79	11	64	61	3	0	35	1.13
36196974--36197049	40	1.9	40	83	2	100	13	27	28	30	1.94
36203750--36203774	4	6.2	4	100	0	50	76	0	0	24	0.80
36204292--36204374	43	1.9	43	92	0	139	31	24	14	30	1.94
36204132--36205603	490	3.0	490	97	0	2818	39	15	12	32	1.85
36205272--36205354	43	1.9	43	90	0	130	31	25	14	28	1.95
36209912--36209988	11	7.4	11	72	19	58	38	0	1	59	1.06
36209917--36209990	17	4.4	17	94	0	130	41	0	1	56	1.07
36211650--36211710	29	2.1	30	82	14	74	32	9	3	54	1.50
36211933--36212228	29	10.1	29	75	12	196	32	25	6	36	1.81
36211963--36212258	58	5.1	57	80	10	264	30	25	6	37	1.81
36211933--36212286	117	3.0	117	80	6	317	31	25	6	36	1.81
36214660--36214688	10	2.7	11	89	10	51	62	0	6	31	1.22
36225548--36225587	17	2.4	17	95	0	71	5	17	12	65	1.44
36226720--36227342	319	2.0	319	92	0	1050	31	13	23	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36230651--36230705	4	12.8	4	78	14	56	70	5	0	23	1.07
36230889--36230967	12	6.6	11	70	16	50	73	3	3	18	1.14
36231085--36231131	24	2.0	24	91	4	78	70	0	4	25	1.05
36239471--36239781	43	7.3	43	81	0	320	27	25	18	27	1.98
36244595--36244852	59	4.5	59	77	10	168	34	16	22	27	1.95
36244709--36244860	54	2.9	52	84	7	200	32	17	23	26	1.97
36244709--36244852	53	2.7	54	87	6	195	34	18	24	22	1.96
36249926--36250005	42	1.9	42	94	0	142	46	11	16	26	1.80
36255257--36255310	23	2.3	23	90	0	81	9	27	22	40	1.84
36262648--36262686	18	2.2	18	86	9	53	20	23	0	56	1.42
36266501--36266540	21	2.0	21	85	9	57	30	7	0	62	1.23
36276450--36276506	30	1.9	29	92	3	96	52	1	3	42	1.28
36276498--36276540	22	1.9	23	90	4	70	58	0	2	39	1.11
36278238--36278267	3	10.0	3	100	0	60	66	0	0	33	0.92
36279465--36279503	18	2.2	18	86	9	53	20	23	0	56	1.42
36279584--36279626	23	2.0	20	86	13	59	48	20	4	25	1.69
36280530--36280567	8	4.9	8	87	6	51	44	0	0	55	0.99
36294185--36294299	40	2.7	43	72	14	121	30	17	20	32	1.95
36295651--36295680	2	15.0	2	100	0	60	50	0	0	50	1.00
36305871--36305909	18	2.2	18	86	9	53	20	23	0	56	1.42
36306935--36306972	8	4.9	8	87	6	51	44	0	0	55	0.99
36318075--36318116	18	2.3	19	88	12	61	2	30	0	66	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36323337--36323374	8	4.9	8	87	6	51	44	0	0	55	0.99
36334222--36334267	17	2.7	17	72	24	51	4	30	0	65	1.12
36337920--36337971	22	2.4	22	86	0	77	61	7	7	23	1.49
36339451--36339502	15	3.6	14	78	17	61	23	0	1	75	0.91
36339455--36339501	14	3.3	14	80	16	60	21	0	2	76	0.89
36339452--36339510	29	2.0	29	87	6	84	23	1	1	72	1.02
36342474--36342538	19	3.4	20	75	10	64	26	6	3	64	1.32
36342498--36342578	29	2.8	28	80	12	92	30	4	1	62	1.24
36360575--36360609	18	1.9	18	88	0	52	60	8	2	28	1.41
36361625--36361676	18	3.1	17	77	5	52	34	0	1	63	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163