genome.fa.s8.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  59  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14904591--14904658	6	11.8	6	70	9	52	52	4	1	41	1.30
14904592--14904668	17	4.6	17	79	4	77	55	3	1	38	1.26
14904598--14904652	28	2.0	28	85	7	76	54	5	1	38	1.34
14904592--14904665	34	2.2	34	85	4	96	54	4	1	40	1.28
14905184--14905333	26	5.8	26	85	0	183	28	15	26	30	1.96
14906722--14906796	39	1.9	39	100	0	150	29	24	12	34	1.91
14912695--14912768	18	4.1	18	81	6	78	71	0	4	24	1.03
14912702--14912768	9	7.4	9	80	5	64	71	0	4	23	1.04
14914030--14914094	24	2.6	25	79	16	64	29	6	4	60	1.41
14914125--14914178	26	2.0	27	85	3	74	72	3	0	24	1.01
14922033--14922080	20	2.3	20	75	3	51	47	0	0	52	1.00
14922418--14922477	15	3.9	15	78	4	57	53	5	13	28	1.60
14923333--14923402	29	2.5	29	80	13	76	35	2	0	61	1.11
14923468--14923509	20	2.1	20	86	0	57	33	23	11	30	1.91
14924330--14924371	15	2.6	17	77	14	52	64	0	2	33	1.07
14931345--14931373	14	2.0	15	93	6	51	20	10	6	62	1.50
14932585--14932653	27	2.6	27	85	0	84	33	17	27	21	1.96
14933497--14933530	13	2.7	13	86	4	52	26	5	8	58	1.51
14935147--14935200	20	2.8	20	83	8	67	24	0	3	72	1.01
14935146--14935195	26	2.0	25	84	4	64	22	0	4	74	0.99
14942187--14942213	7	3.9	7	100	0	54	11	14	0	74	1.08
14942243--14942283	17	2.5	17	88	4	57	21	2	2	73	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14946045--14946081	19	1.9	19	94	0	65	35	21	21	21	1.96
14948064--14948108	17	2.5	18	89	7	65	73	4	4	17	1.17
14951423--14951466	19	2.3	19	84	7	54	47	4	4	43	1.44
14954368--14954393	6	4.3	6	100	0	52	34	0	50	15	1.45
14966891--14966929	18	2.1	19	85	4	53	71	12	7	7	1.29
14967046--14967197	77	2.0	77	80	5	173	21	28	18	32	1.96
14968726--14968783	30	2.0	27	83	9	71	20	5	6	67	1.34
14968746--14968789	22	2.1	21	84	16	56	22	6	6	63	1.43
14971239--14972107	434	2.0	433	89	2	1323	31	14	19	33	1.92
14997125--14997222	38	2.6	37	77	7	108	29	27	16	26	1.97
15003334--15003420	23	3.7	23	81	4	95	37	18	13	29	1.89
15003515--15003573	12	5.0	12	85	2	75	42	16	16	23	1.89
15010197--15010256	26	2.3	27	77	11	70	40	8	13	38	1.75
15014714--15014747	17	2.0	17	88	0	50	23	23	5	47	1.73
15014756--15014799	24	1.9	23	90	9	72	75	6	13	4	1.17
15018720--15019301	40	14.9	40	75	11	381	24	17	24	32	1.97
15018782--15019074	77	3.8	77	91	0	444	25	17	23	33	1.96
15018714--15019301	77	7.5	80	80	7	336	25	17	24	32	1.97
15042601--15042639	20	2.0	20	85	5	53	53	17	7	20	1.68
15042746--15042800	20	2.7	21	85	2	67	52	14	10	21	1.72
15044604--15044661	21	2.8	21	84	2	73	34	25	15	24	1.95
15045414--15045855	194	2.3	194	83	4	545	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15051587--15051657	22	3.3	21	68	26	58	47	22	1	28	1.59
15051578--15051665	43	2.0	43	95	0	158	47	21	1	29	1.58
15051601--15051669	21	3.2	20	67	17	50	44	21	1	31	1.61
15052642--15053310	331	2.0	331	97	0	1275	35	9	22	31	1.87
15053359--15053545	51	3.6	51	86	2	250	32	15	24	28	1.95
15059751--15059786	2	18.0	2	100	0	72	50	0	0	50	1.00
15060606--15060742	51	2.6	50	79	6	123	33	16	22	27	1.95
15060690--15060808	60	2.0	61	83	1	150	35	17	21	26	1.95
15077249--15077534	144	2.0	143	88	3	423	29	20	13	36	1.91
15078554--15078596	21	2.0	21	82	8	52	55	6	20	16	1.64
15079068--15079114	23	2.1	23	84	4	60	31	27	2	38	1.69
15079239--15079326	26	3.7	24	68	25	69	34	1	0	64	1.01
15079265--15079312	10	4.7	10	77	12	53	35	0	0	64	0.94
15079235--15079334	46	2.2	47	87	10	145	36	1	0	63	1.02
15080264--15080294	7	4.4	7	95	0	53	25	3	12	58	1.50
15080880--15080918	18	2.2	18	90	0	60	20	30	5	43	1.73
15081134--15081408	142	1.9	142	90	0	433	36	30	17	15	1.91
15082032--15082077	21	2.2	21	88	11	69	45	17	0	36	1.49
15082030--15082077	20	2.3	21	86	13	73	43	20	0	35	1.52
15091388--15091630	52	4.7	53	88	4	320	30	24	17	27	1.97
15093553--15093624	36	2.0	36	91	0	117	34	26	12	26	1.92
15097959--15098013	21	2.6	21	97	0	101	36	18	9	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15098723--15098966	52	4.7	51	82	7	278	31	23	16	28	1.96
15098762--15098961	104	1.9	104	88	6	307	31	21	17	30	1.95
15102050--15102117	30	2.3	29	85	7	84	19	4	5	70	1.25
15103692--15104034	24	14.3	24	79	0	254	20	25	15	37	1.93
15103693--15104020	48	6.8	48	84	0	350	20	26	16	36	1.93
15107706--15107792	36	2.4	36	82	0	111	41	13	21	22	1.89
15109928--15110408	240	2.0	240	99	0	944	38	8	16	37	1.79
15112673--15112702	12	2.5	12	94	0	51	3	30	0	66	1.07
15112673--15112737	24	2.7	26	76	21	70	3	33	0	63	1.10
15114728--15114757	15	1.9	16	93	6	53	20	16	23	40	1.91
15125385--15125432	22	2.2	22	100	0	96	31	43	12	12	1.80
15136600--15136802	103	2.0	103	100	0	406	33	28	8	29	1.87
15137407--15137460	17	2.9	18	79	15	74	18	0	5	75	0.98
15137446--15137487	16	2.7	15	86	13	59	14	2	9	73	1.18
15137467--15137572	41	2.6	43	72	19	111	17	5	7	68	1.33
15138785--15139052	95	3.0	89	81	9	292	36	21	9	32	1.86
15139168--15139249	27	2.9	28	80	15	80	63	1	2	32	1.15
15139401--15139563	86	1.9	88	83	2	213	38	7	14	39	1.75
15140941--15141174	116	2.0	116	87	1	335	35	9	14	40	1.79
15147135--15147173	15	2.4	16	87	8	53	35	0	2	61	1.10
15148067--15148091	13	1.9	13	100	0	50	48	0	0	52	1.00
15153251--15153326	33	2.4	32	79	12	77	47	1	1	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15159976--15160080	24	4.0	26	71	16	72	49	2	2	44	1.31
15159990--15160116	31	4.4	30	75	14	97	50	2	4	42	1.36
15159990--15160116	56	2.2	56	81	13	134	50	2	4	42	1.36
15160074--15160147	33	2.2	33	82	7	85	52	2	5	39	1.38
15160032--15160160	31	4.1	31	74	4	96	51	3	3	40	1.38
15166016--15166275	49	5.3	49	83	2	308	38	15	24	21	1.92
15166018--15166247	98	2.3	98	91	1	381	39	15	24	20	1.91
15166016--15166311	147	2.0	147	79	6	323	39	14	24	21	1.91
15166467--15167003	192	2.8	192	85	0	653	36	15	21	26	1.93
15166487--15167096	93	6.4	92	71	12	311	35	15	22	26	1.94
15166580--15166910	99	3.4	98	72	13	297	35	15	22	26	1.94
15166467--15167096	192	3.3	187	83	4	547	35	15	22	26	1.94
15167207--15167910	39	17.5	39	69	14	236	31	27	16	24	1.96
15167206--15167952	81	9.2	80	87	3	1002	31	27	16	24	1.96
15167205--15167952	161	4.6	162	87	4	1039	31	27	16	24	1.96
15167206--15167944	242	3.0	243	87	5	1032	31	27	16	23	1.96
15168611--15168655	24	1.9	24	82	13	58	71	8	15	4	1.28
15169895--15169933	18	2.2	19	86	9	55	20	5	2	71	1.17
15185103--15185148	10	5.0	9	82	12	58	52	0	0	47	1.00
15185525--15185558	11	3.0	11	83	8	50	26	0	2	70	1.01
15185884--15186000	31	3.9	31	71	18	102	29	7	6	55	1.54
15186223--15186411	60	3.2	59	86	4	245	47	13	15	23	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15186277--15186382	28	3.6	28	72	13	97	43	14	17	24	1.86
15186525--15186554	2	15.0	2	100	0	60	50	0	0	50	1.00
15191595--15191632	19	2.1	18	90	5	58	55	0	0	44	0.99
15197013--15197070	24	2.7	20	78	21	71	25	10	22	41	1.85
15197131--15197182	21	2.5	21	81	6	61	36	11	25	26	1.90
15199670--15199702	16	2.1	16	94	0	57	24	18	3	54	1.57
15205937--15207504	785	2.0	785	99	0	3109	29	11	26	32	1.91
15207123--15207676	276	2.0	277	93	1	950	29	10	27	32	1.89
15219885--15220072	41	4.6	41	78	4	191	41	26	15	16	1.88
15219955--15219984	16	1.9	15	93	6	51	46	26	16	10	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163