genome.fa.s8.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  88  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25077773--25077871	14	7.1	14	78	0	108	22	24	23	30	1.99
25079015--25079049	6	5.8	6	96	0	52	40	0	0	60	0.97
25100090--25100114	12	2.1	12	100	0	50	56	0	8	36	1.29
25109889--25110008	45	2.7	44	81	3	132	23	22	10	43	1.84
25114143--25114254	53	2.1	53	93	0	197	35	17	2	43	1.64
25121179--25121216	13	2.8	14	84	8	51	52	0	0	47	1.00
25122089--25122133	19	2.5	17	80	16	54	60	4	8	26	1.46
25122447--25122484	20	2.0	19	85	10	51	31	0	18	50	1.47
25125344--25125378	16	2.3	15	95	5	61	28	0	22	48	1.51
25125344--25125377	8	4.2	8	85	14	52	26	0	23	50	1.50
25126452--25126548	43	2.3	43	88	0	149	44	13	11	30	1.79
25127305--25127362	21	2.8	21	89	0	80	34	22	12	31	1.91
25128114--25128350	52	4.6	52	91	2	379	36	24	14	24	1.93
25128114--25128350	102	2.3	102	91	2	366	36	24	14	24	1.93
25130714--25130823	40	2.7	41	80	6	118	33	13	10	42	1.78
25130758--25130821	20	3.2	20	69	8	58	31	10	12	45	1.77
25139303--25139402	40	2.5	39	82	6	112	33	14	12	41	1.82
25139344--25139401	20	2.9	21	71	10	66	31	12	12	44	1.78
25139935--25139968	3	11.3	3	87	0	50	32	0	38	29	1.58
25140419--25140458	16	2.5	16	83	0	53	67	0	0	32	0.91
25140500--25140555	25	2.2	27	78	18	75	73	7	0	19	1.06
25147965--25148028	19	3.3	19	74	8	58	64	1	1	32	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25151333--25151385	15	3.4	16	77	12	65	45	0	1	52	1.11
25151418--25151453	15	2.3	16	85	9	56	44	0	0	55	0.99
25151467--25151516	16	3.2	16	70	18	52	50	0	0	50	1.00
25152268--25152331	16	4.1	16	74	22	57	68	7	1	21	1.23
25152307--25152338	16	2.0	16	93	0	55	75	9	0	15	1.05
25157540--25157591	20	2.7	19	84	3	68	23	28	17	30	1.97
25157584--25157633	13	3.8	13	89	5	75	14	18	22	46	1.84
25157584--25157631	7	7.3	7	75	20	50	14	18	22	43	1.87
25164155--25164206	21	2.5	21	78	6	61	30	13	25	30	1.94
25167742--25167802	17	3.5	17	84	6	70	49	8	16	26	1.73
25167742--25167816	17	4.4	17	77	1	60	46	6	21	25	1.75
25171736--25171947	25	8.4	25	82	4	239	30	23	20	25	1.99
25171736--25171947	75	2.8	75	86	2	291	30	23	20	25	1.99
25174977--25175014	18	2.1	18	90	0	58	23	36	18	21	1.95
25175880--25175909	12	2.5	12	100	0	60	16	16	26	40	1.90
25182712--25182745	7	4.9	7	100	0	68	11	14	29	44	1.81
25182712--25182753	14	3.0	14	92	0	57	11	16	30	40	1.85
25182712--25182753	21	2.0	21	90	0	66	11	16	30	40	1.85
25186671--25186737	28	2.4	28	87	5	91	37	22	17	22	1.94
25187790--25187823	17	1.9	18	88	5	52	38	5	17	38	1.74
25188617--25188828	116	1.8	115	86	4	309	33	29	8	28	1.87
25189326--25189512	52	3.6	52	87	5	236	33	22	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25191098--25191152	8	6.0	9	76	17	51	70	0	27	1	0.97
25191104--25191177	3	25.0	3	71	17	57	64	0	33	1	1.02
25193159--25193203	22	2.0	22	83	8	56	68	2	0	28	1.01
25198181--25198243	24	2.6	24	85	9	76	30	12	7	49	1.69
25198379--25198465	45	1.9	45	97	0	165	10	8	19	62	1.52
25203311--25203349	17	2.3	17	90	0	60	15	12	25	46	1.81
25203339--25203434	41	2.3	41	92	3	158	29	6	26	38	1.80
25203490--25203570	28	2.9	28	100	0	162	35	4	7	51	1.51
25204116--25204174	18	3.4	17	75	17	50	61	1	5	32	1.28
25204505--25204562	29	2.0	30	89	3	91	44	15	8	31	1.76
25204773--25204808	17	2.0	19	89	10	58	52	0	11	36	1.37
25204977--25205010	16	2.1	16	88	0	50	8	0	8	82	0.85
25207119--25207173	19	2.9	19	88	0	83	25	16	34	23	1.95
25207057--25207139	45	1.9	43	87	7	123	32	16	25	25	1.96
25212731--25212832	50	2.0	50	100	0	204	39	9	19	31	1.84
25214237--25214350	19	6.0	19	83	4	131	28	18	28	24	1.98
25214241--25214350	57	1.9	57	87	3	159	29	18	28	24	1.98
25214363--25214443	35	2.3	36	85	6	103	32	12	28	27	1.93
25221098--25221141	21	2.1	21	83	8	54	45	2	2	50	1.27
25223588--25223681	24	4.0	24	72	8	77	25	2	47	24	1.63
25223647--25223739	30	3.1	30	90	0	132	20	5	50	23	1.68
25224968--25225035	19	3.2	21	67	21	52	8	5	13	72	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25224977--25225046	20	3.4	20	73	21	63	10	4	11	74	1.20
25224965--25225051	41	2.1	41	87	4	122	8	4	14	72	1.24
25224978--25225066	21	4.2	21	78	9	83	8	3	12	75	1.16
25225009--25225113	32	3.1	33	79	8	79	9	5	16	68	1.36
25225021--25225078	21	2.8	20	86	2	71	8	1	15	74	1.14
25225102--25225141	20	2.0	20	85	5	53	12	2	22	62	1.42
25229446--25229506	27	2.3	27	76	18	65	52	0	0	47	1.00
25231069--25231119	19	2.7	20	81	9	61	33	3	1	60	1.26
25239385--25239436	21	2.5	21	84	6	70	30	28	13	26	1.94
25240220--25240407	52	3.7	52	90	2	290	34	23	13	29	1.93
25251189--25251230	12	3.5	12	81	12	59	0	35	0	64	0.94
25251189--25251242	24	2.2	24	84	12	67	1	37	0	61	1.07
25252354--25252452	38	2.6	39	80	12	109	26	19	23	31	1.98
25253124--25253163	2	20.0	2	100	0	80	50	0	0	50	1.00
25253487--25253520	17	2.0	17	100	0	68	52	11	17	17	1.73
25258441--25258476	18	2.0	18	89	10	56	72	8	13	5	1.27
25274001--25274078	41	1.9	41	83	0	102	55	2	2	39	1.27
25277528--25277583	18	3.1	18	92	0	94	19	28	23	28	1.98
25283284--25283329	24	1.9	24	90	0	74	32	2	6	58	1.36
25284103--25284157	23	2.3	25	84	9	71	65	20	7	7	1.41
25284920--25285096	88	2.0	88	94	2	311	45	3	17	33	1.65
25286388--25286846	158	2.9	157	83	1	569	22	23	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25296753--25296805	16	3.4	16	79	10	65	33	0	5	60	1.20
25296753--25296792	15	2.6	16	84	8	55	40	0	5	55	1.22
25298231--25298282	21	2.5	21	81	6	61	30	30	13	25	1.94
25299035--25299479	195	2.3	192	80	5	457	23	26	21	28	1.99
25311117--25311164	22	2.1	22	84	7	60	29	6	2	62	1.31
25316228--25316282	20	2.8	20	82	0	65	10	27	18	43	1.83
25319886--25319928	19	2.3	19	100	0	86	39	9	0	51	1.34
25322159--25322213	22	2.4	23	82	11	78	65	5	1	27	1.25
25322437--25322488	21	2.5	20	90	9	77	71	5	1	21	1.17
25322391--25322556	65	2.6	64	79	9	158	66	6	6	21	1.35
25322761--25322798	17	2.3	16	90	4	58	73	2	0	23	0.95
25323948--25324345	50	8.0	50	85	2	487	22	18	17	41	1.90
25325055--25325099	21	2.1	21	83	0	54	55	13	13	17	1.69
25329412--25329441	16	1.9	15	93	6	51	63	3	6	26	1.35
25329451--25329493	23	1.9	23	85	4	61	69	4	4	20	1.25
25329436--25329527	16	5.7	16	67	20	57	70	3	3	22	1.16
25329436--25329585	71	2.1	71	83	9	182	67	3	6	23	1.28
25329683--25329751	4	17.2	4	76	19	56	71	2	2	23	1.14
25329775--25329829	15	3.6	15	80	7	58	74	5	1	18	1.10
25329833--25329866	13	2.5	14	85	4	52	76	5	0	17	0.98
25329894--25329930	4	9.0	4	88	5	56	70	2	0	27	1.01
25334365--25335279	459	2.0	458	92	2	1534	35	8	20	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25336772--25336825	26	2.1	26	85	0	72	37	14	16	31	1.89
25347787--25347870	43	2.0	41	83	4	105	45	7	5	41	1.56
25348353--25348847	39	12.7	39	76	8	443	23	20	32	23	1.98
25348353--25348881	117	4.5	115	80	4	506	23	20	32	23	1.98
25348710--25348883	78	2.2	78	85	4	217	25	21	30	22	1.99
25350146--25350265	6	20.2	6	71	15	63	2	17	1	78	0.95
25350146--25350252	7	14.6	7	73	21	60	0	18	1	78	0.90
25350159--25350252	15	6.1	14	72	24	66	1	18	2	78	0.91
25350146--25350265	16	7.4	16	72	13	59	2	17	1	78	0.95
25350146--25350245	8	12.1	8	73	12	78	1	19	2	78	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163