Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  37  of  163  ( 19493 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9801012--9801108
35
2.7
35
81
7
124
41
1
3
54
1.23
9801814--9801891
3
25.0
3
82
7
84
62
2
0
34
1.09
9801814--9801891
13
6.2
12
79
5
84
62
2
0
34
1.09
9802915--9803121
29
7.1
29
69
16
135
30
24
4
40
1.74
9802917--9803156
58
4.1
58
84
7
281
30
24
5
39
1.77
9802993--9803142
29
5.2
28
70
14
90
32
24
4
38
1.74
9802928--9803153
116
1.9
118
85
5
316
31
23
4
39
1.76
9803197--9803258
28
2.2
28
88
5
90
32
29
11
27
1.91
9810678--9810756
6
13.7
6
69
12
58
49
1
2
46
1.23
9810681--9810756
17
4.4
17
75
17
68
48
1
2
47
1.24
9811424--9811483
28
2.2
28
82
8
70
51
6
1
40
1.38
9811437--9811494
22
2.5
24
80
8
66
53
5
0
41
1.23
9811479--9811504
10
2.6
10
100
0
52
53
0
0
46
1.00
9817264--9817300
17
2.1
18
90
5
58
24
2
27
45
1.66
9836314--9836455
55
2.6
55
85
2
187
54
14
2
28
1.52
9838421--9838477
23
2.5
23
79
0
69
24
19
26
29
1.98
9838773--9838811
20
2.0
20
85
10
53
66
0
2
30
1.05
9838762--9838830
28
2.6
27
88
11
106
68
1
1
28
1.07
9838958--9838996
19
2.1
19
90
0
60
51
5
10
33
1.58
9840904--9840946
21
2.2
19
84
12
52
67
0
6
25
1.15
9846572--9846596
8
3.1
8
100
0
50
36
24
0
40
1.55
9856046--9856084
17
2.3
17
90
0
60
15
12
25
46
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9856289--9856570
148
1.9
148
94
0
492
19
20
13
46
1.83
9856649--9856698
17
2.9
17
77
16
50
40
26
18
16
1.90
9856649--9856747
34
2.9
34
75
0
99
37
25
19
18
1.94
9857594--9857633
21
1.9
21
94
0
71
67
0
2
30
1.04
9859469--9859510
20
2.1
19
86
8
57
26
7
14
52
1.67
9861747--9861790
23
1.9
23
100
0
88
13
15
18
52
1.75
9862257--9862321
33
2.0
32
90
3
103
35
7
13
43
1.73
9863100--9863142
22
1.9
22
95
4
77
74
0
2
23
0.93
9863116--9863145
15
1.9
16
93
6
53
76
0
0
23
0.78
9887052--9887094
21
2.1
21
91
4
70
62
0
11
25
1.29
9893109--9893163
23
2.4
23
87
0
74
29
21
23
25
1.99
9904773--9904815
15
2.8
15
89
3
59
44
4
4
46
1.45
9904848--9904885
16
2.4
16
86
4
51
55
0
0
44
0.99
9904917--9904961
23
2.0
23
82
8
56
57
0
2
40
1.11
9905588--9905645
21
2.8
21
82
10
73
13
15
34
36
1.87
9910170--9910559
184
2.1
183
85
3
525
43
15
9
32
1.78
9911102--9911142
21
2.0
21
90
0
64
34
29
14
21
1.93
9912452--9912491
21
2.0
21
85
5
55
50
7
15
27
1.70
9926298--9926335
15
2.5
15
91
0
58
44
2
5
47
1.39
9926383--9926421
18
2.2
18
86
9
53
41
0
0
58
0.98
9926494--9926562
14
4.6
14
71
23
52
49
0
2
47
1.16
9927186--9927244
21
2.8
21
84
0
64
11
8
40
38
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9927235--9927284
21
2.4
21
89
0
73
12
12
40
36
1.79
9927451--9927775
164
2.0
163
93
2
562
23
22
19
35
1.96
9932752--9932825
21
3.5
21
88
0
112
35
17
45
1
1.57
9933128--9933442
43
7.3
43
77
7
300
23
17
26
31
1.97
9933155--9933439
128
2.2
129
82
7
330
23
18
26
30
1.98
9949005--9949136
55
2.4
55
85
0
165
29
8
14
47
1.73
9951204--9951399
30
6.8
29
76
12
172
38
23
3
34
1.72
9951241--9951404
27
5.8
28
75
15
142
39
23
2
34
1.68
9951241--9951522
56
5.0
56
78
11
204
35
24
5
34
1.79
9951440--9951522
29
2.8
30
68
17
82
28
25
9
36
1.88
9951381--9951522
59
2.5
58
82
11
168
30
24
8
35
1.85
9953467--9953579
54
2.1
55
86
5
158
51
11
8
28
1.68
9954371--9954413
20
2.2
19
84
12
52
53
2
0
44
1.13
9954871--9954924
22
2.4
21
82
11
63
70
9
3
16
1.28
9954964--9955031
26
2.6
27
75
11
70
67
4
0
27
1.09
9955152--9955196
5
8.6
5
82
7
54
73
4
2
20
1.11
9955152--9955196
16
2.9
15
80
9
54
73
4
2
20
1.11
9961339--9961446
56
1.9
56
90
3
173
45
16
5
32
1.71
9963614--9963656
20
2.2
19
84
12
52
53
2
0
44
1.13
9964138--9964295
9
16.9
9
67
26
64
70
4
3
22
1.20
9964138--9964230
14
6.7
14
71
10
75
68
5
5
20
1.29
9964194--9964259
15
4.5
15
77
11
66
72
4
1
21
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9964076--9964259
74
2.4
76
77
13
186
69
4
5
20
1.27
9964194--9964281
33
2.7
33
82
5
99
71
4
1
22
1.11
9964224--9964295
37
1.9
37
83
5
92
72
2
0
25
0.98
9964138--9964295
4
38.0
4
69
21
78
70
4
3
22
1.20
9964361--9964432
30
2.4
30
75
6
76
63
8
8
19
1.47
9973103--9973208
54
1.9
56
90
7
173
47
15
5
32
1.68
9975391--9975433
20
2.2
19
84
12
52
53
2
0
44
1.13
9975916--9976077
9
17.9
9
68
20
79
72
4
2
20
1.14
9975858--9976072
75
2.7
79
78
9
210
71
4
4
20
1.21
9975973--9976070
34
2.8
34
83
10
110
74
4
0
21
0.98
9975916--9976077
4
40.0
4
71
18
88
72
4
2
20
1.14
9978225--9978256
7
4.9
7
96
3
50
56
0
28
15
1.40
9984712--9984749
16
2.4
16
82
4
51
65
5
10
18
1.41
9984680--9984828
61
2.5
58
74
16
131
69
4
7
18
1.31
9984737--9984886
4
36.8
4
70
17
78
69
4
4
21
1.25
9984950--9985024
30
2.5
29
77
10
80
65
8
6
20
1.42
9985012--9985051
5
7.8
5
88
5
62
77
2
0
20
0.88
9985006--9985051
16
2.9
16
80
3
58
78
4
0
17
0.91
9985006--9985051
21
2.2
21
92
0
74
78
4
0
17
0.91
9990369--9990541
59
2.9
60
80
6
190
50
10
15
24
1.75
9990953--9990986
17
2.0
17
88
0
50
23
23
5
47
1.73
9991756--9991797
22
1.9
22
95
0
75
19
11
16
52
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10000983--10001095
59
1.9
57
89
8
174
33
10
15
40
1.81
10002478--10002609
55
2.4
55
85
0
165
29
8
14
47
1.73
10004686--10004942
29
9.0
29
71
14
169
36
25
4
33
1.76
10004686--10005004
59
5.5
57
76
12
228
34
25
6
34
1.81
10016185--10016218
17
2.0
17
88
0
50
23
23
5
47
1.73
10016988--10017029
22
1.9
22
95
0
75
19
11
16
52
1.74
10026159--10026271
59
1.9
57
89
8
174
33
10
15
40
1.81
10027506--10027637
55
2.4
55
85
0
165
29
8
14
47
1.73
10029722--10029991
59
4.6
60
83
7
254
33
25
6
34
1.82
10029723--10029991
29
9.1
29
71
15
176
33
26
6
34
1.82
10031942--10032055
55
2.1
55
86
3
158
51
12
7
28
1.67
10032853--10032895
20
2.2
19
84
12
52
53
2
0
44
1.13
10033374--10033420
13
3.5
14
80
8
53
72
4
2
21
1.12
10033365--10033475
26
4.3
24
69
19
64
72
6
3
17
1.19
10033451--10033518
26
2.6
27
75
11
70
67
4
0
27
1.09
10033365--10033518
4
37.5
4
69
21
52
70
5
2
21
1.21
10033639--10033683
5
8.6
5
82
7
54
73
4
2
20
1.11
10033639--10033683
16
2.9
15
80
9
54
73
4
2
20
1.11
10041343--10041475
55
2.4
56
84
1
160
29
8
14
48
1.73
10043560--10043827
58
4.5
57
78
9
209
37
25
4
33
1.75
10043556--10043762
29
6.9
29
74
7
164
36
25
3
34
1.73
10045838--10045969
55
2.4
55
84
2
167
50
13
9
27
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10046746--10046788
20
2.2
19
84
12
52
53
2
0
44
1.13
10047345--10047412
26
2.6
27
75
11
70
67
4
0
27
1.09
10047533--10047577
5
8.6
5
82
7
54
73
4
2
20
1.11
10047533--10047577
16
2.9
15
80
9
54
73
4
2
20
1.11
10047654--10047702
19
2.7
18
75
6
53
65
0
8
26
1.20
10053754--10053862
57
1.9
57
90
3
175
45
16
5
32
1.70
10056055--10056097
20
2.2
19
84
12
52
53
2
0
44
1.13
10056580--10056740
9
16.9
9
67
25
66
70
4
3
21
1.18
10056637--10056704
15
4.5
15
75
17
61
73
4
1
20
1.08
10056634--10056726
11
8.5
10
71
17
53
72
4
1
22
1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163