genome.fa.s8.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  143  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38818111--38818158	16	3.0	16	79	8	53	31	2	6	60	1.33
38818818--38818859	21	2.0	21	85	4	57	30	7	40	21	1.80
38837368--38837396	12	2.3	13	94	5	51	20	0	3	75	0.94
38839537--38839593	26	2.2	26	81	12	64	29	1	3	64	1.20
38840489--38840535	18	2.5	18	80	16	51	46	2	2	48	1.25
38848105--38848131	6	4.5	6	100	0	54	33	14	51	0	1.43
38849685--38849749	30	2.2	30	85	0	85	24	4	12	58	1.53
38849860--38849917	13	4.5	12	77	10	53	58	1	1	37	1.18
38850021--38850139	56	2.1	56	92	0	193	42	13	11	31	1.80
38850034--38850168	56	2.4	56	86	2	182	45	14	11	28	1.80
38851000--38851063	29	2.2	30	86	5	87	67	6	1	25	1.23
38852481--38852522	11	3.9	11	81	3	50	40	0	4	54	1.21
38852483--38852544	17	3.8	17	80	6	74	40	0	4	54	1.22
38852481--38852522	22	2.0	22	85	4	59	40	0	4	54	1.21
38852487--38852569	27	3.1	27	76	0	76	44	2	4	48	1.37
38852500--38852553	16	3.3	16	79	5	54	42	1	1	53	1.22
38852953--38853031	24	3.2	25	77	13	74	48	24	7	20	1.75
38853295--38853376	3	26.3	3	74	7	65	53	3	2	40	1.32
38853316--38853376	16	3.9	15	77	10	68	54	1	3	40	1.27
38853287--38853376	12	7.2	12	77	12	74	53	3	2	41	1.30
38854406--38854558	29	5.3	29	79	10	179	37	28	1	32	1.66
38854391--38854705	59	5.4	57	83	9	295	35	26	1	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38854396--38854613	58	3.7	58	85	8	257	37	26	1	34	1.65
38854406--38854613	29	7.1	28	74	14	165	36	27	1	34	1.66
38854423--38854740	59	5.4	59	84	8	304	35	27	1	35	1.68
38866330--38866974	199	3.2	198	86	3	828	35	21	24	19	1.96
38867312--38867353	11	3.9	11	81	3	50	40	0	4	54	1.21
38867314--38867375	17	3.8	17	80	6	74	40	0	4	54	1.22
38867312--38867353	22	2.0	22	85	4	59	40	0	4	54	1.21
38867318--38867391	27	2.7	27	76	0	76	43	1	4	51	1.29
38867331--38867384	16	3.3	16	79	5	54	42	1	1	53	1.22
38867805--38867862	26	2.3	25	82	11	73	51	20	6	20	1.70
38868127--38868204	3	25.0	3	80	7	75	56	3	3	35	1.36
38868119--38868194	9	7.8	9	78	16	62	55	3	2	38	1.33
38868119--38868212	12	8.0	12	77	11	70	55	3	3	38	1.32
38868127--38868204	16	5.0	15	80	6	75	56	3	3	35	1.36
38868145--38868212	16	4.3	15	76	10	64	57	1	4	36	1.28
38869210--38869356	30	5.0	29	72	17	115	34	28	2	35	1.69
38869210--38869447	59	4.1	58	82	8	225	35	28	1	34	1.66
38869210--38869416	30	7.1	29	70	16	108	34	28	1	35	1.66
38869337--38869442	29	3.6	29	69	20	76	35	30	0	33	1.58
38872655--38872785	28	4.6	28	72	15	97	29	7	27	35	1.85
38872765--38873107	29	11.7	29	70	13	168	36	3	23	36	1.71
38872746--38873107	59	6.2	57	74	10	241	35	3	24	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38872778--38873054	118	2.4	117	82	4	335	37	3	23	35	1.74
38872896--38873150	30	8.7	30	72	13	156	36	2	23	37	1.69
38874285--38874355	3	23.0	3	75	11	63	30	1	2	64	1.16
38875493--38875690	41	4.8	41	83	8	206	22	30	19	27	1.98
38875493--38875690	82	2.4	82	86	1	272	22	30	19	27	1.98
38875708--38875794	40	2.2	40	78	0	102	24	17	19	39	1.92
38876492--38876560	31	2.2	32	82	7	88	26	11	14	47	1.78
38881243--38881272	5	6.0	5	96	0	51	3	20	40	36	1.69
38883882--38883907	2	13.0	2	100	0	52	50	0	0	50	1.00
38897371--38897449	31	2.5	31	85	6	106	55	8	7	27	1.58
38900310--38900338	3	9.7	3	100	0	58	34	0	31	34	1.58
38907533--38907582	11	5.0	10	83	9	59	26	2	4	68	1.18
38909243--38909445	72	2.8	74	81	8	220	26	19	30	24	1.98
38910333--38910397	33	2.0	33	84	6	87	66	7	12	13	1.45
38916327--38916360	18	1.9	18	88	5	52	50	5	2	41	1.42
38921873--38921920	25	2.1	21	85	14	60	29	20	14	35	1.93
38956145--38956184	2	20.5	2	94	5	73	50	0	0	50	1.00
38971651--38971704	22	2.3	24	87	9	76	14	9	3	72	1.24
38974422--38974467	24	2.0	23	86	4	65	41	10	6	41	1.66
38976082--38976136	27	2.0	28	86	10	78	60	1	0	38	1.08
38976083--38976136	29	1.9	29	92	7	94	59	1	0	38	1.08
38983429--38983488	18	3.4	18	82	17	81	66	3	0	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38983457--38983518	26	2.3	28	77	5	74	64	1	0	33	1.03
38983476--38983503	8	3.5	8	100	0	56	57	0	0	42	0.99
38983457--38983520	27	2.4	26	78	5	74	65	1	0	32	1.02
38988378--38988411	16	2.1	16	88	0	50	58	0	2	38	1.13
38988998--38989023	13	2.0	13	100	0	52	46	7	15	30	1.74
39011437--39011474	19	2.0	20	89	5	60	65	0	0	34	0.93
39013630--39013859	124	1.8	126	84	1	320	26	17	19	36	1.94
39021142--39021808	175	3.8	175	94	2	1099	28	12	16	42	1.85
39021142--39021808	349	1.9	350	91	2	1099	28	12	16	42	1.85
39023224--39023326	36	2.9	36	78	4	111	52	0	0	45	1.13
39023218--39023326	34	3.1	35	75	6	96	54	0	0	44	1.12
39023287--39023337	20	2.5	20	84	6	59	56	1	1	39	1.22
39029271--39029301	13	2.3	14	94	5	55	58	6	35	0	1.24
39032885--39033050	58	2.9	56	79	13	164	43	3	1	51	1.27
39032917--39032993	26	2.9	27	75	11	86	46	0	3	49	1.20
39033212--39033250	16	2.4	16	91	0	60	30	30	7	30	1.85
39034944--39035022	27	2.9	27	78	0	95	32	17	20	29	1.95
39035395--39035445	26	2.0	26	96	0	93	39	7	19	33	1.81
39040461--39040488	14	2.0	14	100	0	56	42	0	0	57	0.99
39044360--39044511	48	3.2	48	89	0	250	34	17	28	19	1.95
39044903--39044951	9	5.4	9	80	0	53	61	2	30	6	1.32
39044905--39044951	18	2.6	18	80	12	60	61	2	29	6	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39047117--39047164	21	2.3	21	89	7	71	33	4	52	10	1.55
39047128--39047181	20	2.6	21	82	5	65	40	5	44	9	1.60
39048040--39048069	2	15.0	2	100	0	60	0	50	0	50	1.00
39052818--39052862	2	22.5	2	100	0	90	0	0	48	51	1.00
39062359--39062490	67	2.0	67	98	0	255	35	11	21	31	1.89
39087443--39087488	25	1.9	23	86	8	65	56	2	4	36	1.31
39091393--39091453	19	3.2	18	81	9	59	62	3	3	31	1.27
39091416--39091465	21	2.5	20	80	9	57	60	2	4	34	1.27
39091394--39091468	10	7.7	10	70	15	50	61	2	2	33	1.24
39091499--39091565	19	3.5	19	78	15	59	61	1	7	29	1.32
39091421--39091538	62	1.9	62	81	6	141	60	1	8	29	1.36
39092140--39092189	24	2.1	24	81	7	57	62	2	2	34	1.18
39100447--39100476	5	6.2	5	96	3	53	0	16	0	83	0.65
39107946--39107971	6	4.3	6	100	0	52	65	15	19	0	1.27
39110204--39110252	17	2.9	17	81	0	53	44	2	6	46	1.39
39114251--39114324	29	2.6	29	83	10	89	47	5	4	43	1.45
39114251--39114326	30	2.6	29	85	8	93	47	5	3	43	1.44
39114315--39114381	23	2.9	24	74	12	70	53	0	1	44	1.09
39120895--39120930	19	1.9	19	88	5	56	36	0	2	61	1.11
39122174--39122244	30	2.3	29	81	15	81	47	1	2	47	1.25
39122559--39122603	21	2.1	22	88	8	67	28	13	0	57	1.36
39122599--39122670	20	3.5	21	75	14	78	26	5	1	66	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39122600--39122678	21	3.7	21	76	10	79	27	5	1	65	1.21
39122894--39122932	21	1.9	20	84	5	51	35	5	7	51	1.53
39123209--39123238	6	5.0	6	100	0	60	16	16	50	16	1.79
39124179--39124360	90	2.0	90	98	0	355	19	29	16	34	1.94
39129806--39129909	37	2.8	37	86	0	118	42	3	37	16	1.66
39129934--39130079	37	4.0	37	79	0	150	37	5	39	17	1.73
39129791--39130051	142	1.8	143	82	4	339	40	4	36	18	1.72
39131147--39131231	42	2.0	42	97	0	161	31	23	15	29	1.95
39133103--39133172	36	1.9	37	85	8	99	37	0	45	17	1.48
39133051--39133260	37	5.7	37	74	3	181	39	3	39	17	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163