genome.fa.s8.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  5  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1581075--1581416	90	3.8	90	90	1	508	35	3	22	38	1.71
1583113--1583160	6	7.5	6	86	13	69	29	0	4	66	1.10
1583150--1583221	16	4.5	16	76	11	67	52	0	2	44	1.15
1583127--1583212	6	14.3	6	82	13	70	46	0	2	51	1.13
1583142--1583214	36	2.0	37	83	2	94	50	0	2	46	1.15
1583156--1583206	11	4.9	10	76	23	52	54	0	3	41	1.19
1583150--1583218	17	4.3	16	82	12	88	52	0	2	44	1.16
1583510--1583537	14	2.0	14	100	0	56	28	14	14	42	1.84
1584641--1584700	24	2.5	24	86	2	77	26	15	16	41	1.88
1584940--1585003	17	3.8	17	79	8	76	35	0	6	57	1.24
1584939--1585019	34	2.3	35	85	2	110	38	1	4	55	1.29
1584990--1585029	18	2.3	18	86	4	55	45	2	0	52	1.14
1585028--1585064	15	2.6	15	87	8	51	51	13	5	29	1.63
1586313--1586372	24	2.5	24	83	2	77	25	13	20	41	1.88
1588695--1588724	9	3.3	9	95	0	51	76	0	0	23	0.78
1593006--1593046	21	2.0	21	85	9	57	56	9	7	26	1.58
1593499--1593543	23	1.9	23	86	4	63	40	0	6	53	1.27
1596248--1596304	29	2.0	29	83	10	73	36	3	22	36	1.72
1596300--1596373	29	2.5	30	84	6	98	43	6	17	32	1.75
1596352--1596517	57	2.9	55	71	13	138	30	4	29	35	1.77
1596365--1596604	29	8.3	29	71	10	125	31	3	30	34	1.74
1596464--1596701	29	8.3	29	77	8	175	36	1	26	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1597683--1597716	15	2.3	15	89	0	50	29	0	2	67	1.05
1598354--1598419	6	11.7	6	75	12	68	56	0	3	40	1.15
1598355--1598403	10	5.1	10	76	18	59	57	0	2	40	1.10
1598354--1598419	22	2.9	23	72	17	66	56	0	3	40	1.15
1598355--1598419	28	2.3	28	100	0	130	56	0	3	40	1.15
1598354--1598419	16	4.2	16	77	18	77	56	0	3	40	1.15
1611926--1611998	31	2.4	31	85	0	92	56	5	4	34	1.42
1617808--1617868	24	2.5	25	76	15	65	42	3	3	50	1.34
1629426--1629469	22	2.1	21	84	16	56	50	2	4	43	1.35
1631045--1631075	15	2.1	15	100	0	62	19	19	12	48	1.81
1650335--1650377	2	22.0	2	95	4	79	0	48	0	51	1.00
1655368--1655450	17	4.9	17	83	0	94	40	0	3	55	1.17
1655390--1655440	11	4.3	12	80	12	52	39	0	3	56	1.18
1655375--1655441	6	11.7	6	79	9	68	41	0	2	55	1.15
1656966--1657284	162	2.0	162	91	0	523	26	17	12	42	1.85
1657372--1657462	30	3.0	30	96	1	164	36	24	4	35	1.75
1657385--1657544	30	5.3	30	75	15	109	33	30	2	33	1.71
1657436--1657812	60	6.4	60	88	5	495	32	29	4	33	1.77
1657466--1657812	119	2.9	119	92	2	567	31	30	4	33	1.77
1663851--1663959	58	1.9	58	90	1	175	22	16	12	47	1.81
1664182--1664270	31	2.9	31	83	3	108	50	12	13	23	1.75
1671254--1671312	31	1.9	31	89	0	91	37	5	16	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1672530--1672570	18	2.3	18	100	0	82	39	29	21	9	1.86
1683193--1683231	14	2.7	15	80	8	53	56	10	7	25	1.59
1683611--1683656	24	1.9	23	86	8	65	54	6	4	34	1.46
1683722--1683755	13	2.6	13	85	0	50	58	11	0	29	1.33
1686682--1686712	15	2.1	15	93	0	53	54	6	3	35	1.42
1690849--1690957	43	2.5	43	81	0	128	28	4	52	14	1.62
1694182--1694284	42	2.4	43	81	3	118	26	5	54	13	1.61
1694957--1695011	25	2.2	25	96	0	101	23	14	5	56	1.59
1697943--1698312	59	6.4	56	83	6	393	34	4	28	32	1.78
1697943--1698039	28	3.4	29	68	5	72	30	5	31	31	1.80
1698029--1698256	28	7.8	29	63	15	85	34	4	28	32	1.78
1698004--1698317	59	5.4	59	86	6	406	35	4	28	31	1.77
1697943--1698317	118	3.2	116	85	5	434	34	4	28	32	1.78
1698091--1698342	30	8.6	29	73	17	175	35	3	26	34	1.74
1698267--1698356	29	3.1	29	77	16	87	33	3	25	37	1.73
1698416--1698749	162	2.1	162	90	1	526	42	12	18	26	1.86
1698620--1698663	23	1.9	23	85	0	61	45	0	13	40	1.44
1698620--1698669	23	2.2	23	81	0	55	46	2	12	40	1.52
1699546--1699570	13	1.9	13	100	0	50	44	0	0	56	0.99
1700220--1700276	28	2.0	29	93	3	98	26	7	22	43	1.78
1700369--1700441	17	4.5	17	83	13	82	54	1	4	39	1.28
1700352--1700441	6	15.0	6	73	16	62	50	1	3	45	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1700395--1700451	11	5.1	11	74	4	51	56	1	1	40	1.20
1700906--1701370	38	12.4	38	66	21	218	32	19	15	32	1.93
1700943--1701389	76	6.0	76	84	5	529	32	19	15	32	1.93
1700762--1701139	182	2.1	184	87	4	559	30	19	16	33	1.94
1700944--1701373	143	2.9	144	85	7	576	32	19	15	32	1.93
1700787--1701214	182	2.3	181	81	7	402	31	21	15	32	1.94
1712829--1712862	17	1.9	18	88	5	52	41	14	20	23	1.89
1713067--1713100	16	2.1	16	88	0	50	38	0	2	58	1.13
1714940--1715187	101	2.5	101	89	0	379	35	24	15	24	1.94
1725681--1725733	4	12.8	4	77	15	54	18	5	0	75	0.99
1725673--1725735	8	7.4	8	77	12	54	17	4	0	77	0.93
1726422--1726613	107	1.8	105	87	4	287	36	13	25	24	1.91
1726956--1726987	2	16.0	2	93	0	55	46	0	3	50	1.17
1727186--1727230	19	2.4	19	81	7	56	40	0	2	57	1.11
1731715--1731752	9	4.2	9	83	12	51	57	0	0	42	0.98
1736093--1736211	33	3.5	32	78	12	114	52	1	3	42	1.27
1741368--1741475	51	2.1	52	87	1	155	54	4	13	26	1.59
1742695--1742803	42	2.7	40	74	19	125	47	2	7	42	1.45
1744723--1744778	26	2.2	26	86	0	76	28	14	12	44	1.81
1756582--1756614	12	2.8	12	90	0	57	27	6	27	39	1.80
1760386--1760518	30	4.6	29	82	10	137	30	7	28	33	1.85
1760583--1760758	30	5.9	30	86	8	236	32	1	26	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1760564--1760764	59	3.4	60	85	8	243	33	1	24	40	1.64
1762599--1762710	16	7.1	16	69	21	67	50	3	2	42	1.33
1762639--1762710	17	4.2	17	78	3	90	54	2	2	40	1.29
1762639--1762710	34	2.1	35	86	2	101	54	2	2	40	1.29
1768288--1768344	23	2.3	25	80	16	66	57	3	1	36	1.26
1773532--1773677	31	4.8	31	77	10	133	52	4	1	41	1.31
1773532--1773666	60	2.2	61	90	1	209	53	3	1	41	1.28
1774848--1774945	48	2.0	48	100	0	196	25	22	10	41	1.85
1774860--1774935	24	3.2	24	68	20	77	25	21	10	43	1.84
1776159--1776193	6	5.8	6	93	0	52	54	2	34	8	1.46
1777769--1777825	19	3.1	19	70	17	57	56	0	0	43	0.99
1777765--1777814	26	2.0	25	88	4	73	50	0	0	50	1.00
1781768--1781811	17	2.8	17	80	12	51	27	0	2	70	0.99
1784346--1784371	3	8.7	3	100	0	52	65	0	0	34	0.93
1791186--1791258	11	6.5	11	80	9	67	36	1	2	58	1.21
1791177--1791257	34	2.4	34	81	8	101	39	1	2	56	1.20
1791177--1791269	17	5.5	16	75	10	69	40	1	2	55	1.19
1791196--1791258	23	2.8	23	74	11	67	36	1	3	58	1.23
1793245--1793467	30	7.6	28	70	21	131	32	29	4	33	1.78
1793271--1793554	58	4.8	60	85	6	368	31	30	3	34	1.76
1797823--1798005	30	6.2	30	79	9	119	35	4	24	35	1.77
1798337--1798371	17	2.1	17	89	10	54	0	25	2	71	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1799359--1799423	28	2.3	30	81	10	82	61	3	0	35	1.12
1799352--1799420	28	2.4	28	75	13	70	60	2	0	36	1.11
1801316--1801363	8	5.6	8	78	11	51	62	2	0	35	1.07
1801721--1801772	20	2.6	19	77	16	52	50	13	1	34	1.53
1805121--1805190	31	2.3	30	85	7	97	20	7	20	52	1.69
1807318--1807355	20	1.9	19	85	15	51	52	15	0	31	1.43
1817481--1817513	2	16.5	2	100	0	66	48	0	0	51	1.00
1818685--1818853	54	3.1	54	95	3	311	32	20	17	30	1.95
1825948--1826140	78	2.5	78	93	1	316	32	18	26	22	1.97
1826335--1826737	81	5.0	81	94	0	680	20	23	17	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163