Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  15  of  163  ( 19493 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4147942--4147997
23
2.4
23
87
0
76
53
3
0
42
1.18
4148973--4149016
22
2.0
22
91
8
72
27
0
20
52
1.47
4157263--4157321
30
1.9
31
89
3
93
30
15
0
54
1.42
4159800--4160451
51
12.9
51
78
7
495
23
17
26
32
1.97
4159800--4160451
99
6.5
99
79
8
505
23
17
26
32
1.97
4159892--4160451
198
2.8
201
80
4
596
23
17
26
32
1.96
4160873--4160930
29
2.0
29
89
0
89
43
20
17
18
1.89
4166880--4166963
21
3.7
21
69
22
62
59
4
3
32
1.35
4168888--4169077
81
2.3
81
98
0
362
21
18
35
24
1.96
4170688--4170712
13
1.9
13
100
0
50
80
4
0
16
0.87
4171316--4171489
87
2.0
87
100
0
348
37
18
17
26
1.92
4174319--4174360
22
1.9
22
85
9
59
76
2
11
9
1.12
4198735--4198792
21
2.8
21
75
0
62
36
17
20
25
1.94
4199160--4199188
13
2.3
13
94
5
51
20
0
10
68
1.18
4199866--4199913
24
2.0
24
91
0
78
29
6
6
58
1.47
4203649--4203690
20
2.1
20
86
0
57
47
2
0
50
1.14
4208101--4208164
18
3.4
19
79
14
62
7
9
4
78
1.09
4208107--4208164
17
3.2
17
81
16
64
8
6
5
79
1.06
4213069--4213115
25
2.0
23
87
8
67
59
6
2
31
1.34
4213186--4213219
13
2.6
13
85
0
50
58
11
0
29
1.33
4225959--4226045
23
3.7
23
81
7
88
29
10
16
43
1.81
4225959--4226022
24
2.7
25
88
7
89
26
12
15
45
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4239293--4239330
16
2.4
16
86
8
51
15
31
0
52
1.43
4241631--4241676
24
2.0
24
87
8
69
15
13
0
71
1.14
4247242--4247282
18
2.3
18
82
0
55
58
4
0
36
1.20
4249277--4249355
40
2.0
40
100
0
158
48
5
29
17
1.69
4251015--4251091
25
3.2
25
75
14
70
10
24
22
42
1.84
4251014--4251188
71
2.5
71
82
6
196
11
23
21
44
1.84
4251014--4251188
23
7.5
23
74
11
133
11
23
21
44
1.84
4251014--4251187
48
3.8
44
77
12
145
11
23
21
43
1.85
4261507--4261555
19
2.7
18
81
12
55
55
6
0
38
1.25
4261566--4261596
16
1.9
16
93
0
53
67
3
0
29
1.06
4261565--4261618
9
6.0
9
78
18
51
66
1
0
31
1.02
4262026--4262076
19
2.7
19
74
17
52
35
3
0
60
1.15
4264522--4264560
6
6.5
6
100
0
78
0
66
0
33
0.92
4270358--4270416
23
2.5
22
76
10
64
47
3
5
44
1.42
4272808--4272874
30
2.2
30
92
5
109
44
20
29
4
1.71
4274472--4274540
31
2.3
31
87
2
95
39
11
7
42
1.69
4275649--4275697
21
2.3
21
89
6
73
34
0
4
61
1.15
4276144--4276171
2
14.0
2
100
0
56
50
0
0
50
1.00
4278833--4278866
17
2.0
17
88
0
50
76
0
0
23
0.79
4284414--4284446
16
2.1
16
94
0
57
33
0
15
51
1.43
4291860--4291893
18
1.9
17
94
5
59
76
0
2
20
0.92
4295412--4295544
60
2.2
60
94
0
230
39
12
11
36
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4297255--4297288
14
2.6
14
90
9
54
20
0
0
79
0.73
4304985--4305013
13
2.2
13
100
0
58
58
10
6
24
1.55
4308536--4308585
11
4.5
11
82
9
66
64
0
2
34
1.05
4308534--4308575
22
1.9
22
100
0
84
57
0
2
40
1.12
4308536--4308585
22
2.3
22
89
0
73
64
0
2
34
1.05
4319584--4319623
20
2.0
20
85
9
55
52
0
2
45
1.14
4327851--4327887
17
2.3
17
86
9
51
29
5
10
54
1.57
4333294--4333332
6
6.8
6
91
2
55
17
7
0
74
1.05
4333287--4333345
17
3.6
16
84
13
75
18
5
0
76
0.97
4333287--4333344
12
5.2
11
82
13
66
17
5
0
77
0.94
4333287--4333345
5
10.8
5
81
18
57
18
5
0
76
0.97
4333291--4333344
6
9.3
6
80
11
51
16
5
0
77
0.94
4334250--4334330
10
7.7
10
71
15
56
77
3
12
6
1.08
4334250--4334308
30
1.9
31
89
3
93
77
3
10
8
1.08
4334280--4334322
13
3.4
12
81
9
50
79
2
11
6
1.02
4334249--4334310
11
5.7
11
78
18
51
79
3
9
8
1.05
4335352--4335397
25
1.9
25
86
8
69
34
4
6
54
1.46
4336212--4336242
14
2.3
14
94
5
55
32
0
6
61
1.21
4338482--4338521
20
2.0
20
95
0
71
17
22
20
40
1.92
4345639--4345667
13
2.2
13
100
0
58
24
6
0
68
1.13
4353916--4353949
5
7.0
5
90
6
52
0
0
14
85
0.60
4356171--4356216
21
2.2
21
84
0
56
50
2
6
41
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4357579--4357618
21
1.9
21
84
0
53
22
20
7
50
1.73
4361383--4361409
2
13.5
2
100
0
54
51
0
0
48
1.00
4364567--4364725
41
3.9
41
84
3
212
24
25
28
22
1.99
4364739--4364826
42
2.1
42
82
0
104
25
19
20
35
1.96
4365396--4365731
168
2.0
168
93
1
575
31
16
22
30
1.96
4366423--4366630
41
5.1
41
89
0
299
33
21
23
22
1.98
4368821--4368963
8
18.4
8
65
18
52
44
3
1
51
1.27
4368920--4369141
22
9.8
22
65
13
92
48
4
0
46
1.27
4368890--4369074
70
2.8
64
81
10
228
48
4
1
45
1.31
4368867--4368966
15
6.4
15
68
13
58
49
2
1
48
1.19
4368955--4369461
112
4.4
111
84
8
594
48
6
0
43
1.36
4369087--4369113
14
1.9
14
100
0
54
55
0
0
44
0.99
4369112--4369209
42
2.2
45
82
12
121
50
8
0
41
1.32
4369334--4369370
17
2.1
18
95
5
67
40
0
0
59
0.97
4369268--4369394
65
2.0
64
89
4
193
46
6
0
46
1.33
4369112--4369461
115
3.1
111
81
11
356
47
7
1
44
1.38
4369332--4369444
50
2.2
51
82
4
131
45
7
1
46
1.41
4369417--4369504
40
2.1
43
83
6
110
47
10
0
42
1.37
4368959--4369488
231
2.3
228
83
9
568
48
7
0
43
1.36
4375190--4375239
21
2.4
21
90
3
75
36
16
46
2
1.58
4375190--4375246
21
2.7
21
86
5
71
36
15
45
1
1.57
4375717--4375758
16
2.6
16
77
7
50
71
0
9
19
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4376557--4376599
19
2.3
19
84
8
52
58
4
0
37
1.19
4377188--4377382
105
1.8
106
83
5
261
26
23
11
38
1.89
4378024--4378050
4
6.8
4
100
0
54
77
0
0
22
0.76
4378023--4378091
8
8.0
9
84
9
65
79
1
2
15
0.92
4379385--4379426
11
3.9
11
81
3
50
40
0
4
54
1.21
4379385--4379426
22
2.0
22
85
4
59
40
0
4
54
1.21
4381339--4381669
30
11.2
30
65
23
100
33
28
3
34
1.76
4381358--4381838
59
8.2
59
81
4
513
31
28
4
35
1.77
4381358--4381838
178
2.7
175
84
5
569
31
28
4
35
1.77
4388688--4388729
16
2.6
16
77
7
50
71
0
9
19
1.13
4389529--4389571
19
2.3
19
88
8
61
60
4
0
34
1.17
4389846--4390116
43
6.3
43
88
0
353
23
17
29
30
1.97
4392763--4392809
24
1.9
25
86
4
69
27
0
14
57
1.38
4400648--4400680
7
4.7
7
96
0
57
42
0
9
48
1.35
4401002--4401261
130
2.0
130
97
0
493
31
11
21
34
1.90
4405139--4405163
4
6.2
4
100
0
50
24
52
0
24
1.48
4426357--4426388
16
2.0
16
100
0
64
31
6
12
50
1.65
4427890--4427938
23
2.0
26
84
11
68
38
6
14
40
1.71
4427890--4427940
25
2.0
26
81
11
61
37
5
13
43
1.69
4445443--4445512
35
2.0
35
100
0
140
34
22
20
22
1.97
4465790--4465845
29
1.9
29
88
0
85
50
1
3
44
1.29
4466962--4467005
22
2.0
22
82
8
54
38
4
22
34
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4469868--4469907
19
2.1
19
100
0
80
27
10
17
45
1.80
4476000--4476059
27
2.1
29
81
6
70
26
5
6
61
1.42
4475999--4476060
28
2.2
29
82
8
74
25
4
6
62
1.39
4477433--4477461
3
9.7
3
100
0
58
34
0
0
65
0.93
4486283--4486317
3
11.7
3
100
0
70
68
0
31
0
0.90
4486647--4486680
16
2.1
16
94
0
59
8
17
23
50
1.74
4486981--4487005
13
1.9
13
100
0
50
44
8
24
24
1.80
4487490--4487540
21
2.4
21
86
0
84
15
21
27
35
1.94
4488207--4488240
11
3.0
11
83
8
50
52
20
8
17
1.71
4488207--4488250
23
2.0
22
86
13
63
54
18
11
15
1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163