genome.fa.s8.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  63  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16036277--16036652	185	2.0	185	96	0	698	34	15	19	30	1.93
16037966--16038190	111	2.0	111	100	0	450	43	3	4	48	1.40
16047809--16047888	39	2.1	39	100	0	160	46	10	15	28	1.77
16050623--16050739	62	1.9	59	84	8	155	50	4	2	42	1.35
16050724--16050778	25	2.2	25	81	12	60	47	7	1	43	1.41
16050773--16050825	12	4.4	12	80	15	56	56	0	0	43	0.99
16050774--16050811	17	2.2	17	90	0	58	57	0	0	42	0.98
16059441--16059481	20	2.1	20	86	13	59	63	0	26	9	1.25
16061693--16061743	25	2.0	26	84	3	68	41	11	7	39	1.71
16061958--16061995	20	1.9	19	94	5	67	55	2	0	42	1.14
16063171--16063208	17	2.2	17	95	0	67	26	23	13	36	1.91
16066522--16066987	232	2.0	232	99	0	923	42	17	21	18	1.90
16072455--16072521	22	3.0	23	82	6	77	25	0	11	62	1.29
16075240--16075297	30	1.9	31	92	3	100	46	1	8	43	1.44
16074818--16075379	279	2.0	278	86	5	778	39	12	12	36	1.80
16079405--16079443	20	2.0	20	84	0	51	51	7	5	35	1.53
16079683--16079736	20	2.6	21	76	2	56	33	3	1	61	1.25
16085415--16085444	14	2.1	14	93	0	51	70	3	6	20	1.25
16087001--16087075	24	3.2	22	71	17	55	24	24	17	34	1.96
16100115--16100545	104	4.1	104	90	2	650	38	14	8	38	1.77
16106011--16106065	24	2.3	24	83	0	65	27	16	9	47	1.76
16107151--16107193	3	14.3	3	90	0	68	65	2	2	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16118090--16118119	14	2.2	14	94	5	53	36	10	23	30	1.87
16123546--16123603	27	2.1	27	87	6	82	44	29	0	25	1.54
16135299--16135345	24	2.0	24	83	8	60	25	12	10	51	1.72
16136100--16136326	103	2.2	103	93	0	391	28	24	19	27	1.98
16138107--16138142	14	2.5	14	90	4	54	22	5	0	72	1.05
16138107--16138146	5	8.2	5	86	5	55	20	5	0	75	0.99
16153044--16153090	22	2.2	22	84	3	60	68	6	6	19	1.34
16156374--16156547	23	7.6	23	88	0	258	34	5	12	47	1.64
16160195--16160243	22	2.2	21	82	10	62	61	10	2	26	1.39
16162101--16162140	18	2.2	18	100	0	80	60	5	7	27	1.45
16175152--16175184	12	2.8	12	95	4	59	0	21	0	78	0.75
16175150--16175190	10	3.8	11	87	12	59	0	19	0	80	0.71
16182552--16182581	15	2.1	15	93	6	53	20	33	6	40	1.78
16186045--16186135	24	3.8	24	82	1	110	31	26	18	23	1.97
16207821--16207883	31	2.0	31	100	0	126	15	9	22	52	1.72
16208540--16208817	25	11.1	25	76	3	159	24	14	24	35	1.93
16208541--16208787	50	4.9	50	80	2	219	23	14	25	36	1.93
16208534--16208814	75	3.7	75	80	2	287	24	14	25	35	1.94
16208627--16208817	50	3.8	50	83	0	202	26	16	24	33	1.96
16220649--16220835	97	1.9	97	96	0	347	35	17	16	30	1.92
16220869--16220929	31	2.0	31	93	6	106	26	22	9	40	1.85
16220869--16220951	31	2.6	31	81	9	87	26	19	10	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16220813--16221005	90	2.1	90	80	3	210	26	18	9	44	1.81
16226280--16226309	15	1.9	16	93	6	53	56	3	0	40	1.16
16232101--16232141	21	2.0	21	85	9	57	48	14	0	36	1.44
16232606--16232654	15	3.4	14	78	10	55	65	2	0	32	1.04
16236976--16237021	2	23.0	2	100	0	92	50	0	0	50	1.00
16239643--16239680	8	4.8	8	100	0	76	47	0	39	13	1.42
16240481--16240521	16	2.4	17	84	12	57	41	0	0	58	0.98
16242694--16242769	38	2.0	38	100	0	152	39	7	13	39	1.73
16243762--16243829	28	2.5	28	90	6	106	51	7	0	41	1.30
16243779--16243825	16	3.2	16	71	22	57	53	8	0	38	1.32
16245599--16245673	31	2.3	32	90	4	116	56	10	8	25	1.61
16251151--16251223	33	2.2	33	100	0	146	39	31	5	23	1.77
16251436--16251587	40	3.8	40	78	3	128	27	25	17	28	1.98
16253632--16253692	24	2.5	24	83	0	77	52	8	13	26	1.67
16254508--16254622	10	11.2	10	69	18	58	43	18	3	34	1.67
16254549--16254624	5	14.4	5	73	10	62	42	18	2	36	1.64
16254508--16254614	22	4.9	22	75	4	90	42	18	3	34	1.68
16254806--16254872	29	2.3	29	97	0	125	56	25	0	17	1.41
16258790--16258862	22	3.3	21	77	7	74	43	19	4	32	1.70
16261357--16261727	184	2.0	184	96	0	679	24	20	8	46	1.78
16262830--16262888	31	2.0	30	86	6	84	32	10	15	42	1.80
16263546--16263584	19	2.1	19	100	0	78	35	30	5	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16271191--16271237	19	2.5	20	76	16	55	57	2	0	40	1.11
16271949--16272004	16	3.5	16	71	9	51	42	7	17	32	1.77
16272773--16272817	2	22.5	2	86	0	54	44	4	4	46	1.43
16276264--16276310	23	2.1	22	88	4	67	21	19	10	48	1.78
16279129--16279760	99	6.4	98	76	8	498	37	16	18	28	1.92
16279087--16279858	200	3.9	200	79	4	667	36	16	19	28	1.93
16279420--16279842	101	4.2	99	73	10	268	34	15	20	29	1.93
16279850--16280079	46	5.0	46	80	4	223	35	26	16	21	1.95
16280041--16280164	50	2.5	50	82	0	140	37	18	16	27	1.93
16280451--16280497	23	1.9	26	87	12	73	48	2	19	29	1.60
16280451--16280503	26	2.2	23	83	10	61	47	3	16	32	1.65
16281277--16281418	41	3.4	41	89	4	214	35	10	30	23	1.89
16281277--16281477	41	4.8	41	82	6	190	34	11	29	24	1.90
16281277--16281461	82	2.2	83	84	4	230	35	10	29	24	1.89
16281398--16281498	43	2.3	43	100	0	202	36	10	24	27	1.89
16282221--16282261	21	2.0	21	95	0	73	26	14	29	29	1.95
16282543--16282848	50	6.1	50	79	4	294	35	16	24	23	1.95
16282539--16282833	150	2.0	150	81	4	344	36	17	23	23	1.95
16283755--16283795	21	2.0	21	85	0	55	41	24	12	21	1.87
16284301--16284369	18	3.8	18	83	11	79	31	21	21	24	1.98
16287451--16287492	17	2.6	17	88	7	61	52	7	4	35	1.50
16291130--16291256	63	2.0	64	92	1	211	33	17	7	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16294380--16294419	22	1.9	21	90	10	64	30	15	15	40	1.87
16295360--16295432	29	2.6	29	81	12	82	60	4	2	32	1.30
16295665--16295866	43	4.7	43	77	3	192	24	22	19	32	1.97
16295657--16295857	85	2.3	86	76	8	212	26	22	19	30	1.98
16299587--16299620	17	2.0	17	88	0	50	44	5	29	20	1.75
16305125--16305163	15	2.6	15	84	12	53	58	0	35	5	1.20
16305114--16305171	27	2.1	28	84	9	75	60	0	36	3	1.14
16306193--16306240	25	1.9	25	83	8	62	75	0	25	0	0.81
16313342--16313621	29	9.6	27	72	22	171	35	3	28	32	1.75
16313304--16313621	58	5.5	59	87	3	439	33	4	29	31	1.78
16313721--16314062	162	2.1	162	88	1	515	43	12	16	26	1.84
16315792--16315869	11	7.1	11	72	15	54	44	2	2	50	1.29
16315778--16315869	6	15.2	6	73	10	71	43	2	3	51	1.30
16315792--16315877	17	5.3	16	76	9	77	45	3	2	48	1.32
16316190--16316776	38	15.6	36	63	23	178	33	17	15	33	1.91
16316165--16316903	76	9.8	76	93	1	1182	34	17	15	32	1.91
16317748--16317791	10	4.1	11	85	14	65	2	0	15	81	0.78
16317749--16317791	21	2.0	21	91	8	70	2	0	16	81	0.79
16328666--16329060	29	13.5	29	68	23	199	37	4	27	31	1.75
16328626--16329062	58	7.5	58	88	1	561	36	5	28	30	1.78
16329129--16329499	162	2.3	162	85	3	507	42	15	16	25	1.87
16331212--16331251	17	2.4	16	91	4	62	52	2	2	42	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16331790--16331823	17	2.0	17	88	0	50	41	14	2	41	1.61
16334645--16334756	42	2.6	43	75	10	104	21	25	11	41	1.86
16334762--16334866	40	2.6	40	87	0	138	21	20	16	41	1.90
16339239--16339328	29	3.1	29	95	0	153	20	14	17	47	1.82
16339261--16339312	17	3.4	17	65	25	51	15	15	21	48	1.81
16339503--16339547	19	2.4	19	100	0	90	0	6	35	57	1.25
16340050--16340097	20	2.4	20	89	0	69	35	10	16	37	1.83
16342243--16342285	21	2.0	23	86	9	63	46	2	16	34	1.60
16343360--16343450	36	2.5	36	85	3	130	40	15	27	16	1.88
16344117--16344168	21	2.5	21	81	15	63	28	13	26	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163