genome.fa.s8.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  139  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37622210--37622241	6	5.3	6	92	0	55	0	18	0	81	0.70
37627479--37627517	21	1.9	20	85	15	53	46	5	28	20	1.72
37630351--37630394	14	2.8	16	80	16	56	47	0	0	52	1.00
37637563--37637605	17	2.5	17	88	3	59	20	27	2	48	1.62
37639944--37639986	18	2.4	18	88	0	59	18	46	9	25	1.79
37639956--37639990	6	5.8	6	93	0	52	17	48	5	28	1.69
37649501--37649535	16	2.1	18	89	10	56	71	0	2	25	1.00
37649607--37649711	18	5.9	18	67	12	56	38	2	1	57	1.25
37651963--37652000	19	2.0	20	90	10	62	34	10	18	36	1.85
37652654--37652697	18	2.3	19	85	14	56	31	6	2	59	1.36
37653108--37653134	6	4.5	6	100	0	54	18	51	0	29	1.46
37659939--37659991	19	2.7	19	85	2	61	43	0	11	45	1.40
37663762--37663792	15	2.0	16	93	6	55	61	0	38	0	0.96
37664865--37664899	17	2.1	17	88	0	52	57	0	2	40	1.14
37671890--37671981	29	3.2	29	73	17	84	35	2	25	36	1.68
37671905--37672040	58	2.3	59	86	6	188	36	2	27	33	1.72
37671906--37672012	29	3.7	27	73	20	92	34	2	29	32	1.72
37671906--37672099	30	6.7	26	74	16	100	35	3	27	34	1.73
37672021--37672188	30	5.6	29	73	10	133	38	2	21	37	1.69
37672021--37672203	60	3.0	60	85	1	242	37	3	21	36	1.72
37672022--37672188	90	1.9	90	82	5	212	38	2	20	37	1.68
37678037--37678189	29	5.2	29	66	17	100	33	3	28	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37678205--37678274	28	2.5	28	88	6	97	40	4	20	35	1.72
37678044--37678284	59	4.1	58	78	10	231	37	4	24	33	1.76
37678205--37678356	30	5.2	29	79	11	125	40	5	20	32	1.76
37678225--37678364	60	2.4	58	78	9	142	37	5	20	35	1.77
37679099--37679137	20	2.0	20	85	10	53	2	15	2	79	0.95
37679522--37679551	3	10.0	3	100	0	60	33	0	0	66	0.92
37679481--37679539	25	2.3	26	82	5	68	35	10	1	52	1.45
37680046--37680101	25	2.2	25	90	0	85	16	10	51	21	1.74
37680244--37680277	12	2.8	12	100	0	68	67	0	0	32	0.91
37686268--37686331	31	2.1	31	93	0	110	45	10	14	29	1.78
37691079--37691105	11	2.5	11	100	0	54	0	7	0	92	0.38
37692077--37692126	5	9.8	5	79	16	50	78	0	2	20	0.86
37692074--37692114	11	3.7	11	87	12	57	78	0	0	21	0.76
37692078--37692126	6	8.3	6	82	8	57	79	0	2	18	0.83
37692078--37692126	17	2.8	17	87	12	64	79	0	2	18	0.83
37692072--37692128	17	3.2	17	82	17	55	75	0	1	22	0.90
37694972--37695020	22	2.2	22	82	7	55	77	4	4	14	1.06
37696096--37696140	23	1.9	24	86	13	67	55	6	4	33	1.46
37696141--37696172	12	2.8	12	86	13	50	46	15	0	37	1.46
37696764--37696832	20	3.6	20	74	25	69	34	0	5	59	1.21
37703689--37703722	16	2.0	16	88	11	50	52	0	0	47	1.00
37703899--37703971	27	2.7	27	80	16	80	23	0	32	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37703949--37704008	28	2.1	28	85	11	79	23	5	28	43	1.74
37703900--37704008	27	4.0	25	78	14	76	22	2	31	43	1.68
37703928--37704029	49	2.1	48	78	8	109	22	4	30	42	1.75
37704520--37704570	18	2.8	18	68	11	50	35	3	15	45	1.65
37707631--37707667	2	18.5	2	100	0	74	51	0	0	48	1.00
37708436--37708604	72	2.3	72	84	4	216	27	20	21	30	1.98
37715743--37715773	2	15.5	2	100	0	62	51	0	0	48	1.00
37739942--37740064	27	4.6	27	81	3	131	29	25	13	32	1.93
37739943--37740071	54	2.4	54	80	0	150	27	24	12	35	1.91
37745225--37745355	69	1.9	66	86	4	181	41	12	13	32	1.83
37749213--37749267	28	2.0	28	85	0	74	36	0	5	58	1.21
37749241--37749345	6	17.2	6	73	11	70	49	2	1	45	1.27
37749232--37749305	17	4.6	16	83	11	80	37	1	2	58	1.21
37749303--37749345	19	2.3	19	84	8	52	62	4	0	32	1.15
37750294--37750324	16	1.9	16	93	0	53	16	22	22	38	1.92
37750937--37751276	163	2.1	163	88	1	495	25	17	12	44	1.84
37751362--37751419	30	1.9	30	82	6	73	37	25	8	27	1.85
37751379--37751635	29	8.7	27	70	18	131	31	28	6	33	1.82
37751407--37751640	59	4.0	59	88	2	362	30	28	5	35	1.81
37755502--37755707	42	4.9	43	74	13	135	38	20	18	22	1.93
37755503--37755707	84	2.4	84	76	8	211	38	20	18	22	1.93
37768039--37768097	31	2.0	30	86	6	84	33	8	13	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37768036--37768108	31	2.5	29	79	16	71	36	9	13	39	1.78
37768282--37768344	30	2.1	29	85	8	83	44	14	7	33	1.74
37768291--37768349	29	2.0	30	90	3	93	44	16	6	32	1.74
37768856--37768880	13	1.9	13	100	0	50	24	0	4	72	1.02
37769693--37769790	39	2.5	39	80	3	99	42	14	5	37	1.67
37770032--37770063	14	2.3	14	100	0	64	46	0	0	53	1.00
37778081--37778134	28	1.9	28	88	0	81	44	5	16	33	1.71
37778222--37778274	27	2.0	27	81	7	63	45	9	18	26	1.80
37778556--37778605	25	2.0	25	84	7	66	58	0	20	22	1.40
37782442--37782473	16	2.0	16	93	0	55	53	3	18	25	1.59
37783122--37783354	120	1.9	120	86	0	331	30	16	25	27	1.97
37784243--37784303	31	1.9	30	84	15	79	26	0	13	60	1.33
37785081--37785283	43	4.7	43	87	0	255	29	27	10	33	1.90
37786077--37786121	19	2.3	19	85	11	56	33	17	0	48	1.48
37787561--37787757	59	3.3	59	92	1	306	51	7	10	30	1.63
37789800--37789834	17	2.0	18	88	5	54	60	0	8	31	1.27
37791387--37791536	78	1.9	78	84	2	203	38	20	8	34	1.82
37791707--37791741	18	2.0	18	88	5	54	25	0	8	65	1.21
37797697--37797796	9	10.7	9	68	8	56	62	3	3	32	1.26
37798071--37798151	19	4.3	19	76	7	85	28	4	3	62	1.33
37798071--37798151	38	2.2	37	84	6	101	28	4	3	62	1.33
37798296--37798410	59	1.9	59	82	3	142	35	10	14	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37798521--37798571	26	2.0	26	88	7	77	49	19	5	25	1.71
37806426--37806456	4	7.8	4	100	0	62	25	0	22	51	1.48
37808025--37808065	21	1.9	22	90	5	66	17	26	29	26	1.97
37809413--37809736	161	2.0	161	87	0	468	29	17	20	32	1.95
37809922--37810030	55	2.0	55	94	0	191	46	10	8	34	1.67
37811806--37811844	19	2.0	20	90	5	62	17	7	5	69	1.32
37818932--37818981	20	2.4	21	81	15	52	48	0	10	42	1.37
37818993--37819039	20	2.4	20	96	3	87	51	14	6	27	1.67
37820752--37820816	32	2.0	32	93	0	112	32	7	30	29	1.85
37820860--37820912	21	2.5	21	96	0	97	33	13	16	35	1.88
37830768--37830832	33	2.0	33	93	0	112	23	10	24	41	1.86
37833059--37833123	32	2.0	32	100	0	130	27	15	24	32	1.95
37839391--37839567	98	1.8	97	83	4	239	48	2	6	41	1.44
37853815--37853855	11	3.7	11	87	9	57	65	2	21	9	1.34
37861563--37861660	49	2.0	49	93	0	169	33	22	5	38	1.76
37861635--37861664	13	2.2	14	94	5	53	36	26	3	33	1.73
37862224--37862258	18	1.9	18	88	11	54	40	2	0	57	1.14
37863570--37863726	71	2.2	71	89	2	244	33	21	21	24	1.97
37865703--37865900	102	1.9	102	86	2	281	27	25	23	23	2.00
37866203--37866502	102	2.9	102	88	2	433	27	25	23	23	2.00
37866836--37867204	132	2.8	132	94	0	639	38	18	5	37	1.73
37884864--37884917	28	2.0	28	85	3	74	42	20	11	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37886505--37886551	24	2.0	22	84	8	58	36	4	4	55	1.39
37889940--37889971	16	2.0	16	93	0	55	46	0	28	25	1.53
37903505--37903538	11	2.9	12	86	8	52	32	0	0	67	0.91
37911387--37911425	15	2.6	14	88	8	51	33	0	0	66	0.92
37912787--37912905	25	4.7	25	73	1	94	22	17	25	34	1.96
37918035--37918291	41	6.3	41	86	3	322	26	21	27	24	1.99
37919563--37919588	13	2.0	13	100	0	52	53	23	7	15	1.67
37922760--37922926	65	2.6	65	87	1	237	40	18	26	13	1.88
37922900--37922952	21	2.5	21	90	0	79	33	20	45	0	1.52
37923153--37923181	15	1.9	15	100	0	58	13	3	34	48	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163