genome.fa.s8.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  160  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45548876--45548925	23	2.3	22	80	16	59	36	2	2	60	1.20
45549481--45549537	29	2.0	29	89	0	87	49	8	1	40	1.44
45553505--45553581	36	2.1	36	97	0	145	28	6	15	49	1.69
45559420--45559503	9	9.3	9	75	17	68	65	2	0	32	1.05
45559432--45559504	37	1.9	39	83	10	98	63	2	0	34	1.09
45559452--45559514	27	2.2	28	83	10	76	63	3	0	33	1.10
45562588--45562644	30	1.9	30	88	0	87	33	0	5	61	1.18
45566394--45566532	69	2.0	69	97	0	260	22	14	20	42	1.88
45567537--45567593	6	9.5	6	74	0	51	22	7	42	28	1.80
45567518--45567593	24	3.2	24	94	0	125	22	9	40	27	1.84
45567621--45567675	18	3.1	18	81	0	74	21	7	43	27	1.79
45569130--45569163	18	2.0	16	88	11	50	70	11	2	14	1.27
45571930--45571976	19	2.4	19	86	13	69	31	0	4	63	1.13
45571924--45571977	19	2.6	20	80	14	56	33	0	3	62	1.12
45571994--45572031	20	1.9	20	88	0	58	60	0	2	36	1.11
45574131--45574174	22	2.0	22	95	0	79	34	13	4	47	1.63
45576250--45576297	20	2.5	19	83	6	60	64	6	12	16	1.46
45576262--45576304	20	2.2	20	83	8	52	67	4	9	18	1.36
45577388--45577425	19	2.0	20	84	5	51	68	0	0	31	0.90
45577821--45577891	21	3.3	20	72	16	63	70	19	0	9	1.15
45577834--45577936	12	9.0	11	76	12	68	70	21	1	5	1.18
45577834--45577930	44	2.2	44	87	3	133	71	21	2	5	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45577879--45577935	15	3.6	16	77	13	55	70	21	3	5	1.22
45577847--45577945	32	3.1	33	80	8	89	69	20	3	7	1.25
45577838--45577977	56	2.6	53	79	5	129	70	19	3	6	1.24
45577920--45577974	21	2.6	22	80	8	69	70	16	5	7	1.28
45577909--45578012	53	2.0	53	82	3	129	67	20	5	6	1.35
45589379--45589973	197	3.0	195	81	6	678	28	16	20	34	1.94
45609354--45609433	3	26.7	3	97	0	151	0	33	0	66	0.92
45618404--45618437	14	2.3	15	90	5	52	38	0	5	55	1.24
45618746--45618826	30	2.7	30	72	25	73	32	9	3	54	1.51
45620267--45620342	31	2.5	31	82	6	102	27	15	10	46	1.79
45620208--45620397	88	2.1	89	80	10	219	27	15	9	47	1.76
45621075--45621101	13	2.1	13	100	0	54	44	14	7	33	1.73
45626437--45627177	291	2.5	291	94	3	1257	23	17	13	44	1.85
45641591--45641673	28	3.0	28	73	13	73	31	0	2	66	1.05
45650978--45651211	108	2.2	108	92	0	387	31	23	20	24	1.98
45650987--45651153	54	3.1	54	69	16	155	26	25	22	25	2.00
45651013--45651185	54	3.2	54	68	15	158	28	23	20	27	1.99
45650982--45651238	108	2.4	108	86	2	311	31	23	21	23	1.98
45657207--45657494	155	1.9	155	88	0	441	25	15	21	37	1.93
45678849--45678890	18	2.3	18	87	0	57	2	21	30	45	1.65
45687393--45687428	18	2.0	18	88	0	54	66	0	33	0	0.92
45688039--45688082	23	1.9	23	90	0	70	63	0	2	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45703562--45703605	22	2.0	22	82	8	54	22	2	13	61	1.43
45703590--45703637	21	2.2	22	96	3	89	4	4	22	68	1.24
45703627--45703651	12	2.1	12	100	0	50	8	8	24	60	1.52
45703606--45703671	32	2.0	32	88	2	96	9	6	19	65	1.42
45703633--45703674	20	2.1	20	86	0	57	14	4	14	66	1.40
45703732--45703756	12	2.1	12	100	0	50	16	0	16	68	1.22
45713052--45713110	30	1.9	31	86	3	84	42	8	10	38	1.69
45720020--45720056	16	2.3	16	90	0	56	40	13	13	32	1.84
45723955--45724004	17	2.6	19	84	12	59	70	10	6	14	1.33
45728297--45728343	25	1.9	24	91	4	76	44	6	8	40	1.60
45734378--45734412	6	5.8	6	96	0	61	45	0	37	17	1.48
45744762--45744816	18	3.3	17	75	19	53	61	0	0	38	0.96
45752216--45752253	3	13.0	3	94	5	69	31	0	0	68	0.90
45752670--45752705	9	3.9	9	88	3	54	44	0	0	55	0.99
45765861--45765886	3	8.7	3	100	0	52	69	0	0	30	0.89
45768578--45768608	6	5.2	6	96	0	53	19	16	32	32	1.94
45774137--45774177	20	2.0	20	86	13	57	53	0	2	43	1.13
45775492--45775557	28	2.5	25	80	7	78	36	10	0	53	1.36
45775495--45775557	25	2.4	27	80	15	78	34	11	0	53	1.36
45779449--45779483	17	2.1	17	94	5	63	74	5	17	2	1.14
45787029--45787214	96	1.9	97	89	3	286	35	4	11	48	1.59
45804824--45804858	15	2.3	15	90	0	52	37	17	0	45	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45807099--45807132	17	2.0	17	94	0	59	44	0	2	52	1.16
45809663--45809718	27	2.1	27	83	6	69	17	37	8	35	1.82
45809893--45809939	6	7.8	6	86	9	69	17	2	14	65	1.36
45810013--45810088	26	2.8	26	78	4	71	56	10	1	31	1.41
45812857--45812911	26	2.1	27	86	3	76	18	25	5	50	1.67
45824439--45824484	24	2.0	23	82	4	56	58	4	2	34	1.30
45837777--45837931	50	3.1	50	60	10	118	35	15	10	38	1.83
45837729--45837931	100	2.0	100	100	0	406	35	14	11	37	1.83
45839780--45839863	28	2.9	28	78	16	91	33	7	4	54	1.49
45843397--45843427	15	2.1	15	93	0	53	61	9	0	29	1.28
45843649--45843703	26	2.2	26	90	3	85	41	1	7	49	1.41
45844179--45844222	2	22.0	2	95	0	79	47	0	2	50	1.13
45846289--45846518	119	1.9	119	89	0	352	29	13	17	39	1.88
45872469--45872503	1	35.0	1	100	0	70	0	0	100	0	0.00
45882672--45882705	7	4.9	7	100	0	68	11	14	0	73	1.10
45893663--45893701	21	1.9	20	89	5	60	33	0	0	66	0.92
45907321--45907394	31	2.4	33	77	13	84	37	8	14	39	1.76
45911880--45911905	2	13.0	2	100	0	52	50	0	0	50	1.00
45920419--45920448	5	6.0	5	100	0	60	20	0	40	40	1.52
45920549--45920760	105	2.0	105	88	0	316	24	11	22	41	1.86
45921133--45921171	16	2.4	17	82	4	53	51	5	10	33	1.58
45936614--45936670	3	19.0	3	92	7	98	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45943327--45943355	2	15.0	2	92	7	51	48	0	0	51	1.00
45945599--45945660	24	2.8	22	75	20	65	59	0	6	33	1.23
45959781--45959844	31	2.1	31	90	0	101	29	12	15	42	1.84
45960792--45960824	17	2.0	17	88	5	50	57	0	0	42	0.98
45962991--45963232	59	4.1	59	85	2	299	32	4	31	31	1.77
45962992--45963160	29	5.7	30	70	15	111	33	4	30	30	1.78
45962992--45963162	30	5.8	30	70	15	115	33	4	31	30	1.78
45963031--45963189	29	5.5	29	66	16	96	32	3	32	30	1.76
45962996--45963232	117	2.0	117	86	3	325	32	3	32	31	1.76
45965100--45965183	18	4.7	18	77	14	77	50	1	1	47	1.16
45965114--45965229	6	20.0	6	72	13	91	53	2	0	43	1.20
45965100--45965229	17	7.1	17	72	19	93	53	2	0	43	1.19
45965114--45965229	11	10.0	12	72	13	91	53	2	0	43	1.20
45965114--45965226	59	1.9	58	87	5	165	52	2	0	44	1.21
45973386--45973624	60	4.0	60	82	8	292	51	9	12	27	1.69
45973386--45973615	56	3.9	57	80	11	259	50	9	11	27	1.70
45990641--45990684	21	2.1	21	82	0	52	75	2	20	2	1.03
45996120--45996146	4	6.8	4	100	0	54	51	0	0	48	1.00
46013163--46013204	21	2.0	21	85	0	57	30	9	21	38	1.85
46022830--46022862	14	2.3	15	89	5	50	66	0	0	33	0.92
46025865--46025910	17	2.7	16	78	18	56	69	4	0	26	1.07
46025872--46025922	26	2.0	25	84	7	66	68	3	0	27	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46025865--46025919	18	3.1	18	77	12	60	70	3	0	25	1.03
46036810--46036843	16	2.1	16	94	0	59	55	11	0	32	1.36
46053640--46053693	24	2.2	24	78	21	60	66	3	0	29	1.09
46055359--46055426	23	3.0	21	79	14	64	45	1	1	51	1.19
46056082--46056111	16	1.9	16	93	6	53	13	6	46	33	1.69
46062639--46062718	14	5.6	14	73	5	70	38	10	0	51	1.36
46062655--46062704	15	3.4	15	77	5	66	40	8	0	52	1.31
46062639--46062708	29	2.4	29	100	0	140	37	11	0	51	1.38
46063992--46064016	12	2.1	12	100	0	50	68	0	0	32	0.90
46081623--46081673	22	2.3	22	82	0	66	21	7	7	62	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163